Wall clock time and date at job start Sat Apr 11 2020 06:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 110.39954 * 2 1 4 4 C 1.55244 * 110.32579 * 122.41118 * 2 1 3 5 5 C 1.54516 * 101.43774 * 155.44579 * 4 2 1 6 6 C 1.53695 * 103.64524 * 325.01281 * 5 4 2 7 7 N 1.47171 * 107.11583 * 21.54297 * 6 5 4 8 8 C 1.34773 * 125.66722 * 181.47274 * 7 6 5 9 9 O 1.21282 * 119.99937 * 180.02562 * 8 7 6 10 10 C 1.50702 * 119.99797 * 0.02562 * 8 7 6 11 11 F 1.39893 * 110.45943 * 310.70579 * 10 8 7 12 12 C 1.54510 * 110.51162 * 188.09501 * 10 8 7 13 13 C 1.54477 * 104.06644 * 241.22179 * 12 10 8 14 14 O 1.44431 * 104.80239 * 23.97743 * 13 12 10 15 15 C 1.44426 * 105.27569 * 319.49013 * 14 13 12 16 16 C 1.52276 * 110.20498 * 83.41899 * 5 4 2 17 17 C 1.53316 * 109.41452 * 182.20486 * 16 5 4 18 18 N 1.46924 * 108.71071 * 306.48991 * 17 16 5 19 19 C 1.36930 * 120.56645 * 234.25739 * 18 17 16 20 20 H 1.08003 * 120.00319 * 27.91355 * 19 18 17 21 21 C 1.38822 * 120.00230 * 207.91051 * 19 18 17 22 22 N 1.31616 * 119.99436 * 17.46244 * 21 19 18 23 23 Si 1.86798 * 120.00257 * 197.46264 * 21 19 18 24 24 H 1.48503 * 109.46884 * 0.02562 * 23 21 19 25 25 H 1.48493 * 109.46886 * 119.99872 * 23 21 19 26 26 H 1.48499 * 109.46777 * 240.00057 * 23 21 19 27 27 C 1.46941 * 118.86857 * 54.23586 * 18 17 16 28 28 C 1.52276 * 110.21080 * 206.60836 * 5 4 2 29 29 H 1.09001 * 109.47111 * 180.80893 * 1 2 3 30 30 H 1.09001 * 109.47234 * 300.80735 * 1 2 3 31 31 H 1.09003 * 109.46856 * 60.80498 * 1 2 3 32 32 H 1.08996 * 111.20567 * 37.35026 * 4 2 1 33 33 H 1.09005 * 110.94029 * 273.42288 * 4 2 1 34 34 H 1.09007 * 109.90642 * 262.17276 * 6 5 4 35 35 H 1.08998 * 109.91301 * 140.91598 * 6 5 4 36 36 H 1.09003 * 110.51007 * 359.86787 * 12 10 8 37 37 H 1.09000 * 110.50485 * 122.44000 * 12 10 8 38 38 H 1.08991 * 110.37404 * 142.81027 * 13 12 10 39 39 H 1.09000 * 110.36913 * 265.04042 * 13 12 10 40 40 H 1.09004 * 110.37308 * 281.67848 * 15 14 13 41 41 H 1.09004 * 110.37288 * 159.34226 * 15 14 13 42 42 H 1.08994 * 109.48301 * 302.18435 * 16 5 4 43 43 H 1.08994 * 109.48251 * 62.22392 * 16 5 4 44 44 H 1.09006 * 109.59855 * 186.72780 * 17 16 5 45 45 H 1.08997 * 109.72795 * 66.33641 * 17 16 5 46 46 H 0.97002 * 119.99770 * 180.02562 * 22 21 19 47 47 H 1.09002 * 109.59538 * 185.99589 * 27 18 17 48 48 H 1.08994 * 109.72929 * 65.60251 * 27 18 17 49 49 H 1.08998 * 109.47746 * 297.77211 * 28 5 4 50 50 H 1.09003 * 109.47608 * 57.78760 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9099 1.0216 0.0000 4 6 2.0693 -0.7803 1.2290 5 6 3.4674 -1.2091 0.7303 6 6 3.2522 -1.4749 -0.7681 7 7 2.0430 -0.7381 -1.1693 8 6 1.4981 -0.7339 -2.4020 9 8 0.4957 -0.0868 -2.6197 10 6 2.1343 -1.5334 -3.5098 11 9 3.5075 -1.2736 -3.5738 12 6 1.4596 -1.2159 -4.8630 13 6 0.8754 -2.5714 -5.3184 14 8 0.7043 -3.3276 -4.0998 15 6 1.8780 -3.0433 -3.3077 16 6 4.4685 -0.0804 0.9367 17 6 5.8352 -0.5042 0.3862 18 7 6.2098 -1.7889 0.9927 19 6 7.4086 -1.9306 1.6391 20 1 7.8758 -1.0750 2.1040 21 6 8.0234 -3.1739 1.6969 22 7 7.6589 -4.1274 0.8661 23 14 9.3679 -3.4935 2.9537 24 1 9.5896 -2.2688 3.7637 25 1 8.9576 -4.6082 3.8448 26 1 10.6249 -3.8577 2.2519 27 6 5.2758 -2.9191 0.8943 28 6 3.9130 -2.4796 1.4418 29 1 -0.3633 -1.0276 0.0145 30 1 -0.3634 0.5263 0.8827 31 1 -0.3633 0.5013 -0.8971 32 1 1.4487 -1.6493 1.4476 33 1 2.1476 -0.1295 2.0999 34 1 3.1105 -2.5420 -0.9392 35 1 4.1107 -1.1162 -1.3358 36 1 0.6642 -0.4824 -4.7304 37 1 2.1955 -0.8542 -5.5811 38 1 -0.0854 -2.4241 -5.8116 39 1 1.5706 -3.0787 -5.9873 40 1 2.7278 -3.6239 -3.6666 41 1 1.6874 -3.2585 -2.2562 42 1 4.1253 0.8105 0.4108 43 1 4.5569 0.1370 2.0010 44 1 6.5807 0.2501 0.6380 45 1 5.7776 -0.6142 -0.6967 46 1 8.0882 -4.9963 0.9067 47 1 5.6526 -3.7568 1.4811 48 1 5.1713 -3.2204 -0.1479 49 1 3.9957 -2.2871 2.5115 50 1 3.1804 -3.2683 1.2701 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086938899.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:25 Heat of formation + Delta-G solvation = -115.001737 kcal Electronic energy + Delta-G solvation = -32682.569128 eV Core-core repulsion = 28431.159715 eV Total energy + Delta-G solvation = -4251.409413 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -49.16914 -41.91027 -40.54908 -39.35382 -37.53882 -34.82336 -33.46784 -32.74300 -32.41213 -31.55421 -30.21494 -28.77919 -27.02754 -26.06444 -25.07493 -24.19607 -23.70995 -22.74468 -21.84623 -20.47174 -19.87359 -18.62086 -18.48781 -17.90120 -17.53513 -17.29055 -16.82795 -16.48290 -16.06482 -15.85059 -15.69910 -15.66067 -15.45357 -14.95054 -14.89455 -14.83725 -14.65067 -14.38814 -14.14425 -13.85419 -13.36235 -13.29339 -13.25674 -13.09036 -12.99730 -12.87114 -12.71703 -12.59716 -12.58190 -12.43135 -12.30517 -12.02409 -11.95408 -11.89129 -11.83695 -11.49966 -11.12779 -11.07076 -10.94264 -10.61651 -10.48397 -9.80897 -8.62283 -7.84212 -5.28301 1.15686 1.47138 1.50136 1.59526 1.64431 2.53636 2.66339 2.77664 3.04091 3.13920 3.28752 3.46747 3.63974 3.69113 3.73931 3.78799 3.96357 4.06566 4.09110 4.19359 4.26963 4.29407 4.38774 4.44223 4.53895 4.58229 4.62575 4.65781 4.69114 4.71057 4.77104 4.78718 4.91152 4.92288 4.95086 5.06020 5.11949 5.16902 5.22944 5.28273 5.34933 5.41325 5.47008 5.50714 5.56975 5.69086 5.82063 6.26436 6.43031 6.79049 7.19429 7.91010 8.41597 9.21553 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015284 B = 0.003634 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.539614 B = 7702.367331 C = 8726.261147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.129 3.871 3 H 0.082 0.918 4 C -0.109 4.109 5 C -0.052 4.052 6 C 0.110 3.890 7 N -0.601 5.601 8 C 0.521 3.479 9 O -0.541 6.541 10 C 0.065 3.935 11 F -0.189 7.189 12 C -0.167 4.167 13 C 0.045 3.955 14 O -0.377 6.377 15 C 0.037 3.963 16 C -0.106 4.106 17 C 0.140 3.860 18 N -0.606 5.606 19 C -0.260 4.260 20 H 0.064 0.936 21 C -0.047 4.047 22 N -0.932 5.932 23 Si 0.961 3.039 24 H -0.268 1.268 25 H -0.290 1.290 26 H -0.295 1.295 27 C 0.176 3.824 28 C -0.113 4.113 29 H 0.049 0.951 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.120 0.880 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.050 0.950 45 H 0.011 0.989 46 H 0.249 0.751 47 H 0.052 0.948 48 H -0.001 1.001 49 H 0.061 0.939 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.548 5.865 -6.634 17.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.028 3.972 3 H 0.100 0.900 4 C -0.147 4.147 5 C -0.053 4.053 6 C -0.013 4.013 7 N -0.333 5.333 8 C 0.308 3.692 9 O -0.419 6.419 10 C 0.044 3.956 11 F -0.169 7.169 12 C -0.205 4.205 13 C -0.031 4.031 14 O -0.296 6.296 15 C -0.041 4.041 16 C -0.145 4.145 17 C 0.015 3.985 18 N -0.330 5.330 19 C -0.390 4.390 20 H 0.082 0.918 21 C -0.242 4.242 22 N -0.579 5.579 23 Si 0.790 3.210 24 H -0.192 1.192 25 H -0.217 1.217 26 H -0.222 1.222 27 C 0.051 3.949 28 C -0.152 4.152 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.122 0.878 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.122 0.878 37 H 0.132 0.868 38 H 0.138 0.862 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.121 0.879 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.068 0.932 45 H 0.029 0.971 46 H 0.058 0.942 47 H 0.070 0.930 48 H 0.017 0.983 49 H 0.080 0.920 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.177 5.947 -6.768 18.517 hybrid contribution 1.631 -0.383 0.346 1.711 sum -14.546 5.564 -6.422 16.846 Atomic orbital electron populations 1.22084 0.93234 1.02374 1.03600 1.22226 0.95434 0.95723 0.83844 0.90043 1.22971 0.94074 1.00811 0.96837 1.20859 0.95563 0.96444 0.92417 1.22285 0.86302 0.96046 0.96625 1.48721 1.27783 1.47695 1.09078 1.20180 0.84429 0.81781 0.82848 1.90618 1.25799 1.43696 1.81829 1.22651 0.77312 0.98170 0.97502 1.92935 1.31453 1.95244 1.97307 1.23561 1.02694 1.01287 0.92937 1.23690 1.03703 0.88566 0.87133 1.89186 1.40384 1.69138 1.30879 1.23981 0.91005 0.90463 0.98671 1.21767 0.94589 0.96528 1.01613 1.21080 0.95222 0.87923 0.94318 1.44271 1.16716 1.08219 1.63777 1.19523 0.98066 0.95117 1.26303 0.91826 1.25691 1.00442 0.97926 1.00178 1.70178 1.45753 1.04504 1.37429 0.85307 0.78818 0.77800 0.79124 1.19241 1.21689 1.22238 1.20625 0.87464 0.90361 0.96468 1.21912 0.97546 0.95879 0.99843 0.93170 0.89631 0.91646 0.89664 0.87837 0.91409 0.91437 0.87827 0.86849 0.86173 0.89480 0.88367 0.87896 0.91061 0.91335 0.93173 0.97107 0.94203 0.92952 0.98252 0.91976 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 8.71 71.98 0.63 -2.74 16 2 C 0.13 2.99 3.45 45.57 0.16 3.15 16 3 H 0.08 1.84 7.74 -2.39 -0.02 1.83 16 4 C -0.11 -2.35 5.42 31.88 0.17 -2.18 16 5 C -0.05 -1.47 0.53 -51.91 -0.03 -1.49 16 6 C 0.11 3.19 4.04 86.49 0.35 3.54 16 7 N -0.60 -16.23 3.25 -788.21 -2.56 -18.79 16 8 C 0.52 14.89 6.62 87.66 0.58 15.47 16 9 O -0.54 -17.06 12.98 -3.04 -0.04 -17.10 16 10 C 0.07 1.66 1.25 -10.52 -0.01 1.65 16 11 F -0.19 -5.43 15.12 44.97 0.68 -4.75 16 12 C -0.17 -3.36 6.51 31.61 0.21 -3.16 16 13 C 0.04 0.78 7.63 72.48 0.55 1.33 16 14 O -0.38 -9.04 11.65 -148.98 -1.74 -10.78 16 15 C 0.04 0.87 6.49 72.49 0.47 1.34 16 16 C -0.11 -3.20 4.78 30.46 0.15 -3.06 16 17 C 0.14 5.53 6.22 86.40 0.54 6.06 16 18 N -0.61 -28.96 2.98 -698.60 -2.08 -31.05 16 19 C -0.26 -13.89 9.58 84.04 0.80 -13.08 16 20 H 0.06 3.35 7.89 -2.91 -0.02 3.33 16 21 C -0.05 -2.55 4.90 84.87 0.42 -2.14 16 22 N -0.93 -53.79 11.20 21.65 0.24 -53.55 16 23 Si 0.96 44.03 29.59 68.60 2.03 46.06 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 25 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 26 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 27 C 0.18 7.92 5.05 86.40 0.44 8.36 16 28 C -0.11 -3.73 4.71 30.46 0.14 -3.59 16 29 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 1.70 5.89 -2.39 -0.01 1.69 16 32 H 0.08 1.74 7.93 -2.39 -0.02 1.72 16 33 H 0.10 1.88 8.01 -2.38 -0.02 1.86 16 34 H 0.07 1.99 6.17 -2.38 -0.01 1.98 16 35 H 0.07 2.26 5.08 -2.39 -0.01 2.25 16 36 H 0.10 2.29 6.54 -2.39 -0.02 2.28 16 37 H 0.11 1.90 8.06 -2.39 -0.02 1.88 16 38 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.10 2.15 8.12 -2.38 -0.02 2.13 16 41 H 0.10 2.49 6.73 -2.39 -0.02 2.47 16 42 H 0.07 1.89 7.47 -2.39 -0.02 1.87 16 43 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.05 1.98 7.93 -2.38 -0.02 1.96 16 45 H 0.01 0.45 6.54 -2.39 -0.02 0.44 16 46 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 47 H 0.05 2.73 6.02 -2.39 -0.01 2.71 16 48 H 0.00 -0.03 7.47 -2.39 -0.02 -0.05 16 49 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 50 H 0.07 2.06 8.10 -2.39 -0.02 2.04 16 Total: -1.00 -65.08 372.78 3.03 -62.05 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 0.94 Total: 18.43 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 5.56 Total: 9.47 kcal Atomic # 7 Polarization: -98.98 SS G_CDS: -4.40 Total: -103.38 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -1.78 Total: -27.88 kcal Atomic # 9 Polarization: -5.43 SS G_CDS: 0.68 Total: -4.75 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -65.08 3.03 -62.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086938899.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.950 kcal (2) G-P(sol) polarization free energy of solvation -65.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds