Wall clock time and date at job start Sat Apr 11 2020 06:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 H 1.09003 * 109.47260 * 304.99323 * 3 2 1 5 5 C 1.52993 * 109.47626 * 64.99586 * 3 2 1 6 6 C 1.53006 * 109.47097 * 184.99881 * 3 2 1 7 7 N 1.46899 * 109.46983 * 174.99946 * 6 3 2 8 8 C 1.48530 * 110.99837 * 290.12030 * 7 6 3 9 9 C 1.54304 * 104.69185 * 200.77329 * 8 7 6 10 10 H 1.08994 * 112.05276 * 262.01301 * 9 8 7 11 11 C 1.54085 * 109.28081 * 136.34756 * 9 8 7 12 12 N 1.47200 * 106.23834 * 266.93891 * 11 9 8 13 13 C 1.34777 * 126.70504 * 148.59095 * 12 11 9 14 14 O 1.21283 * 120.00463 * 179.68768 * 13 12 11 15 15 C 1.50700 * 119.99675 * 359.40891 * 13 12 11 16 16 S 1.80997 * 109.47151 * 180.27780 * 15 13 12 17 17 C 1.76196 * 100.00314 * 179.97438 * 16 15 13 18 18 H 1.08005 * 120.00018 * 0.02562 * 17 16 15 19 19 C 1.38799 * 120.00626 * 179.97438 * 17 16 15 20 20 N 1.31633 * 119.99674 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00584 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46793 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47282 * 119.99523 * 21 19 17 24 24 H 1.48500 * 109.47237 * 240.00020 * 21 19 17 25 25 C 1.47205 * 106.59340 * 328.32206 * 12 11 9 26 26 C 1.53760 * 106.40010 * 31.59259 * 25 12 11 27 27 C 1.52998 * 112.03988 * 219.04038 * 26 25 12 28 28 C 1.48522 * 111.00038 * 174.72133 * 7 6 3 29 29 H 1.08996 * 109.46917 * 300.00592 * 1 2 3 30 30 H 1.09003 * 109.46123 * 60.00738 * 1 2 3 31 31 H 1.09003 * 109.46729 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47328 * 239.99147 * 2 1 3 33 33 H 1.09004 * 109.46859 * 119.99170 * 2 1 3 34 34 H 1.09003 * 109.47016 * 59.99588 * 5 3 2 35 35 H 1.09003 * 109.47761 * 180.02562 * 5 3 2 36 36 H 1.08998 * 109.47051 * 300.00187 * 5 3 2 37 37 H 1.08997 * 109.46871 * 54.99815 * 6 3 2 38 38 H 1.08999 * 109.46866 * 294.99237 * 6 3 2 39 39 H 1.09006 * 110.39149 * 81.97195 * 8 7 6 40 40 H 1.09000 * 110.39755 * 319.58361 * 8 7 6 41 41 H 1.09003 * 110.22117 * 147.71430 * 11 9 8 42 42 H 1.09001 * 110.07609 * 26.07816 * 11 9 8 43 43 H 1.09009 * 109.47352 * 300.27556 * 15 13 12 44 44 H 1.08998 * 109.47585 * 60.27844 * 15 13 12 45 45 H 0.97003 * 120.00297 * 179.97438 * 20 19 17 46 46 H 1.09003 * 110.06774 * 150.82075 * 25 12 11 47 47 H 1.08994 * 110.07615 * 272.29655 * 25 12 11 48 48 H 1.08997 * 109.47226 * 58.98453 * 27 26 25 49 49 H 1.08998 * 109.47248 * 178.98435 * 27 26 25 50 50 H 1.09002 * 109.47207 * 298.98754 * 27 26 25 51 51 H 1.09001 * 110.39267 * 40.42653 * 28 7 6 52 52 H 1.08996 * 110.39244 * 278.03305 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6353 2.1266 1.3072 6 6 3.5649 1.4443 -0.1257 7 7 4.0447 2.8275 -0.2461 8 6 3.6626 3.4111 -1.5574 9 6 4.6410 4.5865 -1.7626 10 1 4.1984 5.5415 -1.4800 11 6 5.1527 4.5748 -3.2160 12 7 6.4070 3.8046 -3.2047 13 6 6.8940 3.0434 -4.2046 14 8 7.9494 2.4622 -4.0656 15 6 6.1241 2.9095 -5.4932 16 16 7.0271 1.8240 -6.6256 17 6 5.9331 1.8442 -8.0065 18 1 5.0216 2.4222 -7.9650 19 6 6.2429 1.1182 -9.1482 20 7 7.3544 0.4150 -9.1995 21 14 5.0833 1.1402 -10.6126 22 1 3.9130 2.0008 -10.3042 23 1 5.7951 1.6785 -11.7996 24 1 4.6198 -0.2415 -10.8977 25 6 7.0289 4.0334 -1.8902 26 6 5.8756 4.2341 -0.8933 27 6 6.1879 5.3238 0.1342 28 6 5.5290 2.8782 -0.2431 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5140 -0.8899 33 1 1.8934 -0.5137 0.8901 34 1 2.0698 1.5876 2.1491 35 1 1.9982 3.1545 1.3070 36 1 0.5490 2.1253 1.3967 37 1 3.8571 0.8799 -1.0112 38 1 4.0030 0.9836 0.7598 39 1 2.6349 3.7732 -1.5271 40 1 3.7830 2.6736 -2.3510 41 1 5.3417 5.5927 -3.5571 42 1 4.4229 4.0915 -3.8657 43 1 5.1421 2.4834 -5.2871 44 1 6.0052 3.8923 -5.9493 45 1 7.5709 -0.0927 -9.9972 46 1 7.6253 3.1674 -1.6027 47 1 7.6556 4.9245 -1.9228 48 1 6.3788 6.2651 -0.3812 49 1 5.3384 5.4436 0.8065 50 1 7.0691 5.0393 0.7092 51 1 5.9383 2.0583 -0.8334 52 1 5.9083 2.8386 0.7779 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101135796.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:34 Heat of formation + Delta-G solvation = -45.504568 kcal Electronic energy + Delta-G solvation = -28362.164595 eV Core-core repulsion = 24679.981981 eV Total energy + Delta-G solvation = -3682.182614 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.96623 -38.68605 -37.32353 -35.14027 -32.95915 -32.44676 -31.20182 -29.90299 -29.45008 -27.10844 -26.25481 -26.09371 -25.44048 -24.43621 -22.38612 -21.35844 -20.17350 -19.36253 -19.13916 -17.63090 -16.62146 -16.15347 -15.81337 -15.66926 -15.30955 -14.93722 -14.82093 -14.61162 -14.44679 -13.96949 -13.89620 -13.66984 -13.33321 -13.21147 -12.94090 -12.77636 -12.64550 -12.43938 -12.24852 -12.15757 -12.04522 -11.97958 -11.72998 -11.66836 -11.37288 -11.08656 -11.04607 -10.99985 -10.96286 -10.88240 -10.78775 -10.75955 -10.63777 -10.57010 -9.82327 -9.43191 -9.09182 -8.74397 -8.49194 -8.25115 -6.52479 -6.23518 -3.94344 2.89827 3.02468 3.20151 3.25099 3.29953 3.60054 3.71169 4.04576 4.18498 4.26433 4.40246 4.58865 4.69239 4.81074 4.89038 4.93596 4.98901 5.01716 5.06170 5.11696 5.14903 5.28450 5.30048 5.37969 5.40339 5.44362 5.46174 5.47948 5.52011 5.55143 5.59269 5.66097 5.68711 5.72204 5.76384 5.80904 5.82350 5.84604 5.87094 5.88687 5.93112 5.96202 6.01883 6.10410 6.16516 6.21766 6.42585 6.60676 6.81228 7.57964 7.68294 8.33567 8.53221 9.21843 10.83973 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010049 B = 0.002973 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2785.734604 B = 9417.286183 C =11356.963706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.086 4.086 4 H 0.069 0.931 5 C -0.137 4.137 6 C 0.047 3.953 7 N -0.504 5.504 8 C 0.037 3.963 9 C -0.096 4.096 10 H 0.102 0.898 11 C 0.106 3.894 12 N -0.624 5.624 13 C 0.551 3.449 14 O -0.515 6.515 15 C -0.146 4.146 16 S -0.061 6.061 17 C -0.534 4.534 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.280 1.280 25 C 0.114 3.886 26 C -0.072 4.072 27 C -0.124 4.124 28 C 0.044 3.956 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.048 0.952 35 H 0.065 0.935 36 H 0.048 0.952 37 H 0.038 0.962 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.049 0.951 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.080 0.920 47 H 0.066 0.934 48 H 0.058 0.942 49 H 0.066 0.934 50 H 0.058 0.942 51 H 0.049 0.951 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.375 8.076 22.511 26.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.105 4.105 4 H 0.088 0.912 5 C -0.195 4.195 6 C -0.082 4.082 7 N -0.227 5.227 8 C -0.091 4.091 9 C -0.116 4.116 10 H 0.120 0.880 11 C -0.018 4.018 12 N -0.361 5.361 13 C 0.340 3.660 14 O -0.389 6.389 15 C -0.297 4.297 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.205 1.205 25 C -0.009 4.009 26 C -0.074 4.074 27 C -0.182 4.182 28 C -0.084 4.084 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.098 0.902 47 H 0.084 0.916 48 H 0.077 0.923 49 H 0.085 0.915 50 H 0.077 0.923 51 H 0.067 0.933 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.878 7.291 22.971 26.046 hybrid contribution -1.643 0.133 -1.866 2.489 sum -11.520 7.424 21.106 25.165 Atomic orbital electron populations 1.21796 0.95758 1.01493 1.01863 1.21569 0.96063 0.96325 1.02020 1.21122 0.94202 0.95972 0.99167 0.91240 1.21748 1.00181 1.01335 0.96202 1.22360 0.95614 0.89176 1.01034 1.65394 1.08591 1.18105 1.30634 1.23241 0.99273 0.95809 0.90750 1.22839 0.95147 0.99602 0.94015 0.88020 1.22150 0.86678 0.96483 0.96527 1.48493 1.23406 1.49232 1.14924 1.20013 0.85503 0.76927 0.83584 1.90712 1.22585 1.45015 1.80620 1.23501 1.03381 1.06054 0.96724 1.85409 1.30003 1.58414 1.09558 1.22891 1.09155 1.35196 1.01019 0.90903 1.24996 0.95772 0.94542 0.98280 1.70030 1.22875 1.28445 1.28899 0.86114 0.80143 0.78065 0.81164 1.19600 1.20528 1.20547 1.22017 0.94842 1.01846 0.82206 1.22021 0.94526 0.95723 0.95121 1.21622 1.01897 0.96806 0.97834 1.23212 0.88610 0.95763 1.00841 0.92518 0.92785 0.92908 0.92024 0.92039 0.93296 0.91621 0.93289 0.94400 0.90829 0.89985 0.93258 0.91252 0.90108 0.89495 0.89287 0.92220 0.90186 0.91595 0.92251 0.91532 0.92279 0.93259 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.67 37.16 0.36 -0.74 16 2 C -0.12 -0.97 5.40 -26.73 -0.14 -1.12 16 3 C -0.09 -0.71 2.39 -90.62 -0.22 -0.93 16 4 H 0.07 0.62 7.04 -51.93 -0.37 0.25 16 5 C -0.14 -1.05 8.84 37.15 0.33 -0.72 16 6 C 0.05 0.44 4.20 -3.82 -0.02 0.42 16 7 N -0.50 -4.77 4.82 -230.12 -1.11 -5.88 16 8 C 0.04 0.35 5.18 -2.24 -0.01 0.34 16 9 C -0.10 -0.86 3.71 -88.29 -0.33 -1.19 16 10 H 0.10 0.75 7.90 -51.93 -0.41 0.34 16 11 C 0.11 1.15 6.17 -3.09 -0.02 1.13 16 12 N -0.62 -9.09 3.32 -171.42 -0.57 -9.66 16 13 C 0.55 10.78 7.90 -10.98 -0.09 10.70 16 14 O -0.52 -12.12 16.09 5.55 0.09 -12.03 16 15 C -0.15 -3.03 5.13 36.01 0.18 -2.85 16 16 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 17 C -0.53 -15.27 9.50 30.94 0.29 -14.98 16 18 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 21 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 C 0.11 1.39 5.92 -3.26 -0.02 1.37 16 26 C -0.07 -0.67 1.08 -152.35 -0.16 -0.83 16 27 C -0.12 -0.89 8.59 37.16 0.32 -0.58 16 28 C 0.04 0.43 5.56 -2.24 -0.01 0.42 16 29 H 0.06 0.38 6.56 -51.93 -0.34 0.04 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.55 7.75 -51.93 -0.40 0.15 16 36 H 0.05 0.35 6.56 -51.93 -0.34 0.01 16 37 H 0.04 0.42 7.88 -51.93 -0.41 0.01 16 38 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 39 H 0.08 0.70 7.63 -51.93 -0.40 0.31 16 40 H 0.05 0.57 7.23 -51.93 -0.38 0.19 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.08 0.89 6.78 -51.93 -0.35 0.54 16 43 H 0.09 1.68 7.86 -51.91 -0.41 1.27 16 44 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 45 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.08 1.09 7.37 -51.93 -0.38 0.71 16 47 H 0.07 0.75 7.88 -51.93 -0.41 0.34 16 48 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.05 0.60 7.39 -51.93 -0.38 0.22 16 52 H 0.08 0.74 7.92 -51.93 -0.41 0.33 16 LS Contribution 413.07 15.07 6.22 6.22 Total: -1.00 -33.25 413.07 -11.08 -44.33 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -9.58 Total: -2.48 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 0.37 Total: -7.54 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: -0.94 Total: -41.03 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.09 Total: -12.03 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.25 -11.08 -44.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101135796.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.179 kcal (2) G-P(sol) polarization free energy of solvation -33.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds