Wall clock time and date at job start Sat Apr 11 2020 06:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 H 1.09003 * 109.47260 * 304.99323 * 3 2 1 5 5 C 1.52993 * 109.47626 * 64.99586 * 3 2 1 6 6 C 1.53006 * 109.47097 * 184.99881 * 3 2 1 7 7 N 1.46899 * 109.46983 * 174.99946 * 6 3 2 8 8 C 1.48530 * 110.99837 * 290.12030 * 7 6 3 9 9 C 1.54304 * 104.69185 * 200.77329 * 8 7 6 10 10 H 1.08994 * 112.05276 * 262.01301 * 9 8 7 11 11 C 1.54085 * 109.28081 * 136.34756 * 9 8 7 12 12 N 1.47200 * 106.23834 * 266.93891 * 11 9 8 13 13 C 1.34777 * 126.70504 * 148.59095 * 12 11 9 14 14 O 1.21283 * 120.00463 * 179.68768 * 13 12 11 15 15 C 1.50700 * 119.99675 * 359.40891 * 13 12 11 16 16 S 1.80997 * 109.47151 * 180.27780 * 15 13 12 17 17 C 1.76196 * 100.00314 * 179.97438 * 16 15 13 18 18 H 1.08005 * 120.00018 * 0.02562 * 17 16 15 19 19 C 1.38799 * 120.00626 * 179.97438 * 17 16 15 20 20 N 1.31633 * 119.99674 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00584 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46793 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47282 * 119.99523 * 21 19 17 24 24 H 1.48500 * 109.47237 * 240.00020 * 21 19 17 25 25 C 1.47205 * 106.59340 * 328.32206 * 12 11 9 26 26 C 1.53760 * 106.40010 * 31.59259 * 25 12 11 27 27 C 1.52998 * 112.03988 * 219.04038 * 26 25 12 28 28 C 1.48522 * 111.00038 * 174.72133 * 7 6 3 29 29 H 1.08996 * 109.46917 * 300.00592 * 1 2 3 30 30 H 1.09003 * 109.46123 * 60.00738 * 1 2 3 31 31 H 1.09003 * 109.46729 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47328 * 239.99147 * 2 1 3 33 33 H 1.09004 * 109.46859 * 119.99170 * 2 1 3 34 34 H 1.09003 * 109.47016 * 59.99588 * 5 3 2 35 35 H 1.09003 * 109.47761 * 180.02562 * 5 3 2 36 36 H 1.08998 * 109.47051 * 300.00187 * 5 3 2 37 37 H 1.08997 * 109.46871 * 54.99815 * 6 3 2 38 38 H 1.08999 * 109.46866 * 294.99237 * 6 3 2 39 39 H 1.09006 * 110.39149 * 81.97195 * 8 7 6 40 40 H 1.09000 * 110.39755 * 319.58361 * 8 7 6 41 41 H 1.09003 * 110.22117 * 147.71430 * 11 9 8 42 42 H 1.09001 * 110.07609 * 26.07816 * 11 9 8 43 43 H 1.09009 * 109.47352 * 300.27556 * 15 13 12 44 44 H 1.08998 * 109.47585 * 60.27844 * 15 13 12 45 45 H 0.97003 * 120.00297 * 179.97438 * 20 19 17 46 46 H 1.09003 * 110.06774 * 150.82075 * 25 12 11 47 47 H 1.08994 * 110.07615 * 272.29655 * 25 12 11 48 48 H 1.08997 * 109.47226 * 58.98453 * 27 26 25 49 49 H 1.08998 * 109.47248 * 178.98435 * 27 26 25 50 50 H 1.09002 * 109.47207 * 298.98754 * 27 26 25 51 51 H 1.09001 * 110.39267 * 40.42653 * 28 7 6 52 52 H 1.08996 * 110.39244 * 278.03305 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6353 2.1266 1.3072 6 6 3.5649 1.4443 -0.1257 7 7 4.0447 2.8275 -0.2461 8 6 3.6626 3.4111 -1.5574 9 6 4.6410 4.5865 -1.7626 10 1 4.1984 5.5415 -1.4800 11 6 5.1527 4.5748 -3.2160 12 7 6.4070 3.8046 -3.2047 13 6 6.8940 3.0434 -4.2046 14 8 7.9494 2.4622 -4.0656 15 6 6.1241 2.9095 -5.4932 16 16 7.0271 1.8240 -6.6256 17 6 5.9331 1.8442 -8.0065 18 1 5.0216 2.4222 -7.9650 19 6 6.2429 1.1182 -9.1482 20 7 7.3544 0.4150 -9.1995 21 14 5.0833 1.1402 -10.6126 22 1 3.9130 2.0008 -10.3042 23 1 5.7951 1.6785 -11.7996 24 1 4.6198 -0.2415 -10.8977 25 6 7.0289 4.0334 -1.8902 26 6 5.8756 4.2341 -0.8933 27 6 6.1879 5.3238 0.1342 28 6 5.5290 2.8782 -0.2431 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5140 -0.8899 33 1 1.8934 -0.5137 0.8901 34 1 2.0698 1.5876 2.1491 35 1 1.9982 3.1545 1.3070 36 1 0.5490 2.1253 1.3967 37 1 3.8571 0.8799 -1.0112 38 1 4.0030 0.9836 0.7598 39 1 2.6349 3.7732 -1.5271 40 1 3.7830 2.6736 -2.3510 41 1 5.3417 5.5927 -3.5571 42 1 4.4229 4.0915 -3.8657 43 1 5.1421 2.4834 -5.2871 44 1 6.0052 3.8923 -5.9493 45 1 7.5709 -0.0927 -9.9972 46 1 7.6253 3.1674 -1.6027 47 1 7.6556 4.9245 -1.9228 48 1 6.3788 6.2651 -0.3812 49 1 5.3384 5.4436 0.8065 50 1 7.0691 5.0393 0.7092 51 1 5.9383 2.0583 -0.8334 52 1 5.9083 2.8386 0.7779 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101135796.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:33 Heat of formation + Delta-G solvation = -65.953698 kcal Electronic energy + Delta-G solvation = -28363.051335 eV Core-core repulsion = 24679.981981 eV Total energy + Delta-G solvation = -3683.069355 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.93932 -40.00226 -38.22297 -36.11941 -34.62160 -33.88038 -32.07382 -31.14040 -30.43408 -27.83389 -27.76382 -27.10791 -26.95003 -25.26728 -23.24127 -22.14105 -20.97030 -20.73885 -20.06917 -19.46081 -18.06406 -17.25335 -16.92088 -16.63568 -16.61267 -16.55383 -15.89813 -15.75616 -15.52348 -15.40249 -14.91266 -14.57256 -14.41515 -14.17224 -14.02281 -13.81292 -13.73805 -13.46190 -13.22095 -13.19223 -13.10081 -12.93881 -12.81583 -12.71547 -12.66742 -12.59127 -12.41719 -12.08187 -11.83908 -11.73787 -11.69314 -11.60212 -11.45490 -11.34999 -11.29238 -11.18998 -11.01759 -10.33169 -9.83520 -9.48452 -8.72772 -8.38094 -6.17483 1.19483 1.39520 1.41889 1.48260 1.54749 2.03784 2.23604 2.89392 2.96190 3.14444 3.29846 3.44886 3.57151 3.82281 3.87441 4.00477 4.08158 4.11201 4.14874 4.16213 4.21068 4.34007 4.36733 4.42895 4.51325 4.59024 4.59296 4.62298 4.66733 4.69392 4.75439 4.77659 4.81237 4.89894 4.90220 4.96630 5.09200 5.15026 5.15930 5.18725 5.19914 5.22660 5.29572 5.30784 5.38288 5.49434 5.51028 5.59109 5.80821 5.99051 6.16489 6.34946 7.02883 7.04175 8.71548 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010049 B = 0.002973 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2785.734604 B = 9417.286183 C =11356.963706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.080 4.080 4 H 0.065 0.935 5 C -0.130 4.130 6 C 0.048 3.952 7 N -0.494 5.494 8 C 0.036 3.964 9 C -0.085 4.085 10 H 0.134 0.866 11 C 0.096 3.904 12 N -0.615 5.615 13 C 0.548 3.452 14 O -0.567 6.567 15 C -0.118 4.118 16 S -0.150 6.150 17 C -0.545 4.545 18 H 0.082 0.918 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 1.000 3.000 22 H -0.256 1.256 23 H -0.272 1.272 24 H -0.273 1.273 25 C 0.109 3.891 26 C -0.061 4.061 27 C -0.117 4.117 28 C 0.043 3.957 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.013 0.987 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.023 0.977 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.101 0.899 44 H 0.107 0.893 45 H 0.272 0.728 46 H 0.057 0.943 47 H 0.081 0.919 48 H 0.071 0.929 49 H 0.076 0.924 50 H 0.062 0.938 51 H 0.017 0.983 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.127 10.553 23.662 29.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.099 4.099 4 H 0.083 0.917 5 C -0.188 4.188 6 C -0.080 4.080 7 N -0.217 5.217 8 C -0.092 4.092 9 C -0.104 4.104 10 H 0.152 0.848 11 C -0.026 4.026 12 N -0.349 5.349 13 C 0.337 3.663 14 O -0.446 6.446 15 C -0.269 4.269 16 S 0.077 5.923 17 C -0.693 4.693 18 H 0.100 0.900 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.822 3.178 22 H -0.179 1.179 23 H -0.198 1.198 24 H -0.199 1.199 25 C -0.013 4.013 26 C -0.063 4.063 27 C -0.175 4.175 28 C -0.085 4.085 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.032 0.968 38 H 0.094 0.906 39 H 0.117 0.883 40 H 0.042 0.958 41 H 0.112 0.888 42 H 0.098 0.902 43 H 0.119 0.881 44 H 0.125 0.875 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.099 0.901 48 H 0.090 0.910 49 H 0.095 0.905 50 H 0.081 0.919 51 H 0.035 0.965 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.670 9.811 24.168 28.998 hybrid contribution -0.789 -0.612 -2.091 2.317 sum -13.458 9.199 22.077 27.443 Atomic orbital electron populations 1.21781 0.94887 1.01843 1.02167 1.21566 0.96808 0.96074 1.01558 1.21068 0.92993 0.96199 0.99604 0.91699 1.21681 1.00726 1.00885 0.95463 1.22357 0.96687 0.88982 0.99994 1.65455 1.08013 1.17850 1.30403 1.23283 1.00497 0.95501 0.89907 1.22891 0.94549 1.00697 0.92290 0.84784 1.22507 0.84878 0.96944 0.98268 1.48423 1.24502 1.47526 1.14489 1.19751 0.84880 0.77484 0.84211 1.90687 1.24740 1.47575 1.81612 1.23280 1.02758 1.05005 0.95874 1.85596 1.33019 1.61368 1.12307 1.23205 1.09301 1.35557 1.01246 0.89955 1.26155 0.97572 0.93730 1.01677 1.70193 1.25089 1.29423 1.30051 0.84884 0.77887 0.78501 0.76541 1.17945 1.19779 1.19866 1.22251 0.96095 1.01450 0.81534 1.22008 0.93310 0.96074 0.94889 1.21602 1.02532 0.96110 0.97227 1.23219 0.88955 0.95303 1.01061 0.91601 0.93033 0.92603 0.93401 0.91654 0.93178 0.91915 0.92404 0.96838 0.90597 0.88313 0.95823 0.88812 0.90186 0.88086 0.87457 0.91925 0.92476 0.90087 0.91006 0.90499 0.91888 0.96467 0.88747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.67 71.98 0.70 -1.29 16 2 C -0.12 -1.88 5.40 30.60 0.17 -1.72 16 3 C -0.08 -1.25 2.39 -10.79 -0.03 -1.27 16 4 H 0.06 1.08 7.04 -2.39 -0.02 1.06 16 5 C -0.13 -1.72 8.84 71.98 0.64 -1.09 16 6 C 0.05 0.91 4.20 86.31 0.36 1.27 16 7 N -0.49 -8.73 4.82 -881.98 -4.25 -12.98 16 8 C 0.04 0.63 5.18 86.43 0.45 1.07 16 9 C -0.08 -1.26 3.71 -9.28 -0.03 -1.29 16 10 H 0.13 1.27 7.90 -2.39 -0.02 1.25 16 11 C 0.10 1.88 6.17 86.61 0.53 2.41 16 12 N -0.62 -17.64 3.32 -814.64 -2.70 -20.34 16 13 C 0.55 22.00 7.90 87.66 0.69 22.70 16 14 O -0.57 -28.11 16.09 -3.04 -0.05 -28.16 16 15 C -0.12 -4.96 5.13 71.24 0.37 -4.60 16 16 S -0.15 -8.57 20.57 -56.49 -1.16 -9.73 16 17 C -0.55 -31.57 9.50 67.95 0.65 -30.93 16 18 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 19 C 0.01 0.77 5.49 84.86 0.47 1.24 16 20 N -0.91 -56.48 13.22 21.65 0.29 -56.20 16 21 Si 1.00 43.83 29.55 68.60 2.03 45.86 16 22 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 25 C 0.11 2.59 5.92 86.50 0.51 3.10 16 26 C -0.06 -1.00 1.08 -50.78 -0.05 -1.06 16 27 C -0.12 -1.27 8.59 71.98 0.62 -0.65 16 28 C 0.04 0.82 5.56 86.43 0.48 1.30 16 29 H 0.07 0.75 6.56 -2.39 -0.02 0.74 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.06 0.88 7.75 -2.39 -0.02 0.86 16 36 H 0.06 0.67 6.56 -2.39 -0.02 0.66 16 37 H 0.01 0.32 7.88 -2.39 -0.02 0.30 16 38 H 0.08 1.37 8.13 -2.39 -0.02 1.35 16 39 H 0.10 1.42 7.63 -2.38 -0.02 1.40 16 40 H 0.02 0.54 7.23 -2.39 -0.02 0.52 16 41 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.08 1.61 6.78 -2.39 -0.02 1.59 16 43 H 0.10 3.92 7.86 -2.39 -0.02 3.90 16 44 H 0.11 4.08 8.14 -2.40 -0.02 4.06 16 45 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 46 H 0.06 1.63 7.37 -2.39 -0.02 1.61 16 47 H 0.08 1.71 7.88 -2.39 -0.02 1.69 16 48 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 51 H 0.02 0.44 7.39 -2.39 -0.02 0.42 16 52 H 0.09 1.58 7.92 -2.39 -0.02 1.56 16 Total: -1.00 -75.95 413.07 1.52 -74.43 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.87 Total: 17.92 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: 6.51 Total: -10.80 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -6.67 Total: -89.52 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.05 Total: -28.16 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -75.95 1.52 -74.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101135796.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.473 kcal (2) G-P(sol) polarization free energy of solvation -75.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds