Wall clock time and date at job start Sat Apr 11 2020 06:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46981 * 2 1 4 4 N 1.46898 * 109.47129 * 180.02562 * 3 2 1 5 5 C 1.47839 * 111.00320 * 54.71183 * 4 3 2 6 6 C 1.54901 * 104.79992 * 146.36492 * 5 4 3 7 7 C 1.55142 * 101.65368 * 322.93166 * 6 5 4 8 8 C 1.47445 * 110.99990 * 175.55905 * 4 3 2 9 9 H 1.08996 * 109.89099 * 117.17559 * 8 4 3 10 10 C 1.53000 * 109.88894 * 356.14238 * 8 4 3 11 11 H 1.08999 * 109.49524 * 323.23318 * 10 8 4 12 12 C 1.53042 * 109.49564 * 83.29721 * 10 8 4 13 13 C 1.53035 * 109.53969 * 181.34565 * 12 10 8 14 14 C 1.53193 * 109.31383 * 298.64027 * 13 12 10 15 15 N 1.46920 * 108.77647 * 54.62969 * 14 13 12 16 16 C 1.34783 * 120.62960 * 126.12216 * 15 14 13 17 17 O 1.21282 * 120.00128 * 179.97438 * 16 15 14 18 18 C 1.50700 * 119.99827 * 359.97438 * 16 15 14 19 19 S 1.80999 * 109.46863 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99981 * 179.97438 * 19 18 16 21 21 H 1.08003 * 119.99662 * 0.02562 * 20 19 18 22 22 C 1.38793 * 120.00248 * 179.97438 * 20 19 18 23 23 N 1.31628 * 119.99902 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00093 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47087 * 90.00108 * 24 22 20 26 26 H 1.48500 * 109.46860 * 209.99743 * 24 22 20 27 27 H 1.48498 * 109.47122 * 329.99945 * 24 22 20 28 28 C 1.46924 * 118.74444 * 306.39259 * 15 14 13 29 29 H 1.08996 * 109.47160 * 300.00014 * 1 2 3 30 30 H 1.09007 * 109.47196 * 59.99703 * 1 2 3 31 31 H 1.08994 * 109.46954 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47192 * 240.00701 * 2 1 3 33 33 H 1.08999 * 109.47093 * 120.00043 * 2 1 3 34 34 H 1.09003 * 109.46869 * 59.99871 * 3 2 1 35 35 H 1.08999 * 109.47242 * 299.99951 * 3 2 1 36 36 H 1.09000 * 110.37463 * 265.19889 * 5 4 3 37 37 H 1.08997 * 110.37138 * 27.42076 * 5 4 3 38 38 H 1.09002 * 110.99080 * 81.02425 * 6 5 4 39 39 H 1.08997 * 110.99639 * 204.80053 * 6 5 4 40 40 H 1.08996 * 110.70551 * 277.27020 * 7 6 5 41 41 H 1.08999 * 110.70710 * 154.03290 * 7 6 5 42 42 H 1.09004 * 109.45906 * 61.32744 * 12 10 8 43 43 H 1.09001 * 109.46140 * 301.37326 * 12 10 8 44 44 H 1.08995 * 109.49771 * 178.68474 * 13 12 10 45 45 H 1.09000 * 109.52097 * 58.60032 * 13 12 10 46 46 H 1.08997 * 109.58447 * 294.84151 * 14 13 12 47 47 H 1.09005 * 109.70314 * 174.49186 * 14 13 12 48 48 H 1.09001 * 109.46866 * 300.00058 * 18 16 15 49 49 H 1.08993 * 109.47147 * 60.00322 * 18 16 15 50 50 H 0.97007 * 120.00153 * 180.02562 * 23 22 20 51 51 H 1.08994 * 109.59432 * 173.39567 * 28 15 14 52 52 H 1.09006 * 109.58301 * 293.82659 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0384 0.6454 -1.1275 6 6 5.3441 1.3674 -1.5439 7 6 4.9553 2.8564 -1.3470 8 6 4.0373 2.8149 -0.1072 9 1 4.6076 3.0633 0.7878 10 6 2.8836 3.8048 -0.2806 11 1 2.1095 3.3558 -0.9029 12 6 2.2989 4.1529 1.0903 13 6 1.1233 5.1169 0.9155 14 6 1.6207 6.4090 0.2597 15 7 2.3130 6.0685 -0.9906 16 6 1.9531 6.6461 -2.1540 17 8 2.5326 6.3570 -3.1794 18 6 0.8306 7.6512 -2.1807 19 16 0.5884 8.2404 -3.8749 20 6 -0.7419 9.3673 -3.6198 21 1 -1.1468 9.5092 -2.6286 22 6 -1.2688 10.0732 -4.6923 23 7 -0.7750 9.9006 -5.9002 24 14 -2.6787 11.2684 -4.4216 25 1 -2.1338 12.6170 -4.1220 26 1 -3.5146 11.3335 -5.6473 27 1 -3.5084 10.8050 -3.2806 28 6 3.4010 5.0820 -0.9499 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 4.2544 -0.3727 -0.8037 37 1 3.3273 0.6372 -1.9536 38 1 6.1698 1.0895 -0.8889 39 1 5.5889 1.1617 -2.5859 40 1 4.4135 3.2312 -2.2154 41 1 5.8396 3.4630 -1.1517 42 1 3.0670 4.6243 1.7036 43 1 1.9524 3.2424 1.5792 44 1 0.6928 5.3461 1.8903 45 1 0.3654 4.6560 0.2822 46 1 2.3108 6.9180 0.9325 47 1 0.7742 7.0606 0.0431 48 1 -0.0864 7.1812 -1.8252 49 1 1.0812 8.4930 -1.5353 50 1 -1.1430 10.3943 -6.6498 51 1 3.7277 4.8559 -1.9649 52 1 4.2363 5.4828 -0.3756 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120319742.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:53 Heat of formation + Delta-G solvation = -30.466907 kcal Electronic energy + Delta-G solvation = -28656.994676 eV Core-core repulsion = 24975.464144 eV Total energy + Delta-G solvation = -3681.530532 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.84201 -39.25059 -36.90434 -34.83121 -33.34993 -32.43759 -31.82674 -30.96857 -29.46158 -27.49852 -25.73181 -25.59152 -25.09535 -23.46346 -22.38564 -21.34774 -20.74003 -19.29267 -19.03670 -17.66801 -16.76903 -16.56331 -16.05164 -15.63136 -15.46901 -15.17107 -14.81308 -14.79740 -14.32904 -14.01452 -13.79310 -13.59846 -13.39139 -13.18195 -13.14502 -13.00129 -12.68772 -12.54315 -12.45990 -12.11014 -11.90408 -11.83888 -11.58655 -11.40585 -11.26894 -11.17112 -11.07610 -11.07055 -11.02955 -10.90376 -10.76548 -10.57513 -10.40225 -10.35984 -9.80918 -9.35259 -9.07464 -8.55831 -8.38937 -8.23142 -6.50922 -6.22361 -3.93006 2.93490 3.05489 3.21516 3.25447 3.29607 3.59323 3.69591 4.19417 4.30101 4.39419 4.46736 4.63982 4.69938 4.70656 4.78231 4.86937 4.92760 5.02648 5.07259 5.11717 5.12780 5.16362 5.26257 5.29899 5.30574 5.44285 5.46606 5.48435 5.51045 5.56605 5.62339 5.63865 5.68245 5.70759 5.71799 5.75465 5.78595 5.84075 5.87003 5.91765 5.95522 6.01266 6.10207 6.12041 6.12647 6.27953 6.65141 6.77363 6.86013 7.57324 7.59271 8.34326 8.56752 9.22884 10.85057 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015837 B = 0.002529 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.629109 B =11069.765363 C =11431.167453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C 0.032 3.968 4 N -0.521 5.521 5 C 0.040 3.960 6 C -0.130 4.130 7 C -0.145 4.145 8 C 0.082 3.918 9 H 0.087 0.913 10 C -0.130 4.130 11 H 0.089 0.911 12 C -0.116 4.116 13 C -0.136 4.136 14 C 0.107 3.893 15 N -0.619 5.619 16 C 0.535 3.465 17 O -0.519 6.519 18 C -0.150 4.150 19 S -0.062 6.062 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C 0.119 3.881 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.045 0.955 36 H 0.077 0.923 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.089 0.911 48 H 0.088 0.912 49 H 0.089 0.911 50 H 0.268 0.732 51 H 0.095 0.905 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.060 -18.243 16.933 26.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.095 4.095 4 N -0.245 5.245 5 C -0.088 4.088 6 C -0.168 4.168 7 C -0.183 4.183 8 C -0.026 4.026 9 H 0.105 0.895 10 C -0.150 4.150 11 H 0.107 0.893 12 C -0.153 4.153 13 C -0.174 4.174 14 C -0.016 4.016 15 N -0.355 5.355 16 C 0.323 3.677 17 O -0.393 6.393 18 C -0.301 4.301 19 S 0.165 5.835 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 C -0.004 4.004 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.063 0.937 36 H 0.096 0.904 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.107 0.893 48 H 0.107 0.893 49 H 0.107 0.893 50 H 0.078 0.922 51 H 0.113 0.887 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.063 -18.832 15.682 26.128 hybrid contribution -1.913 1.506 0.681 2.528 sum 7.150 -17.326 16.362 24.880 Atomic orbital electron populations 1.21739 0.95543 1.01705 1.02010 1.21607 0.95670 0.96628 1.02342 1.22782 0.87870 0.96954 1.01887 1.63859 1.07711 1.10260 1.42660 1.23062 0.95542 0.98021 0.92138 1.22695 0.97585 0.95009 1.01539 1.23004 0.99877 0.97009 0.98459 1.22431 0.94495 0.87396 0.98321 0.89486 1.22242 0.98838 0.95878 0.98019 0.89268 1.21815 0.97781 0.99548 0.96205 1.21928 0.98280 0.96150 1.01058 1.21719 0.97402 0.96918 0.85594 1.48099 1.36374 1.43240 1.07778 1.20336 0.83873 0.81109 0.82410 1.90682 1.54325 1.62156 1.32167 1.23549 0.98536 0.99801 1.08173 1.85399 1.45681 1.52785 0.99637 1.22854 1.20279 1.28010 0.97141 0.90971 1.24990 0.97354 0.96803 0.94432 1.70020 1.40744 1.40329 0.99192 0.86172 0.80925 0.80531 0.77900 1.20258 1.20747 1.19690 1.21623 0.88942 0.87350 1.02466 0.92620 0.92693 0.92634 0.92164 0.91429 0.89415 0.93721 0.90444 0.93519 0.90812 0.90857 0.90464 0.90528 0.91708 0.90748 0.90688 0.91432 0.91583 0.89296 0.89348 0.89310 0.92187 0.88669 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.12 -0.98 5.73 -26.73 -0.15 -1.14 16 3 C 0.03 0.28 3.70 -3.83 -0.01 0.27 16 4 N -0.52 -4.71 5.27 -223.36 -1.18 -5.89 16 5 C 0.04 0.34 5.34 -2.30 -0.01 0.33 16 6 C -0.13 -1.05 7.08 -24.59 -0.17 -1.22 16 7 C -0.15 -1.31 5.39 -24.90 -0.13 -1.45 16 8 C 0.08 0.74 3.22 -66.72 -0.21 0.52 16 9 H 0.09 0.77 7.97 -51.93 -0.41 0.35 16 10 C -0.13 -1.28 1.53 -90.50 -0.14 -1.42 16 11 H 0.09 1.04 5.15 -51.93 -0.27 0.77 16 12 C -0.12 -0.98 4.72 -26.69 -0.13 -1.11 16 13 C -0.14 -1.22 6.08 -26.61 -0.16 -1.38 16 14 C 0.11 1.18 6.34 -3.71 -0.02 1.16 16 15 N -0.62 -8.86 2.97 -172.77 -0.51 -9.37 16 16 C 0.53 10.29 7.72 -10.98 -0.08 10.20 16 17 O -0.52 -11.93 15.27 5.56 0.08 -11.85 16 18 C -0.15 -3.08 4.50 36.01 0.16 -2.91 16 19 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 20 C -0.53 -15.24 9.50 30.94 0.29 -14.94 16 21 H 0.07 1.94 7.80 -52.48 -0.41 1.54 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.21 13.22 55.49 0.73 -25.47 16 24 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 C 0.12 1.46 4.90 -3.71 -0.02 1.44 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.48 6.77 -51.93 -0.35 0.13 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.75 4.84 -51.93 -0.25 0.50 16 35 H 0.04 0.46 5.81 -51.93 -0.30 0.16 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.43 7.35 -51.93 -0.38 0.05 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.83 6.26 -51.93 -0.33 0.51 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.59 5.31 -51.93 -0.28 0.31 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.09 1.02 5.93 -51.93 -0.31 0.71 16 48 H 0.09 1.68 7.70 -51.91 -0.40 1.28 16 49 H 0.09 1.69 7.93 -51.92 -0.41 1.28 16 50 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 51 H 0.10 1.36 5.12 -51.93 -0.27 1.10 16 52 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 397.45 15.07 5.99 5.99 Total: -1.00 -33.09 397.45 -11.64 -44.73 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -8.99 Total: -0.20 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -0.53 Total: -10.41 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: -0.96 Total: -40.73 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.08 Total: -11.85 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.09 -11.64 -44.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120319742.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.260 kcal (2) G-P(sol) polarization free energy of solvation -33.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds