Wall clock time and date at job start Sat Apr 11 2020 06:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46981 * 2 1 4 4 N 1.46898 * 109.47129 * 180.02562 * 3 2 1 5 5 C 1.47839 * 111.00320 * 54.71183 * 4 3 2 6 6 C 1.54901 * 104.79992 * 146.36492 * 5 4 3 7 7 C 1.55142 * 101.65368 * 322.93166 * 6 5 4 8 8 C 1.47445 * 110.99990 * 175.55905 * 4 3 2 9 9 H 1.08996 * 109.89099 * 117.17559 * 8 4 3 10 10 C 1.53000 * 109.88894 * 356.14238 * 8 4 3 11 11 H 1.08999 * 109.49524 * 323.23318 * 10 8 4 12 12 C 1.53042 * 109.49564 * 83.29721 * 10 8 4 13 13 C 1.53035 * 109.53969 * 181.34565 * 12 10 8 14 14 C 1.53193 * 109.31383 * 298.64027 * 13 12 10 15 15 N 1.46920 * 108.77647 * 54.62969 * 14 13 12 16 16 C 1.34783 * 120.62960 * 126.12216 * 15 14 13 17 17 O 1.21282 * 120.00128 * 179.97438 * 16 15 14 18 18 C 1.50700 * 119.99827 * 359.97438 * 16 15 14 19 19 S 1.80999 * 109.46863 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99981 * 179.97438 * 19 18 16 21 21 H 1.08003 * 119.99662 * 0.02562 * 20 19 18 22 22 C 1.38793 * 120.00248 * 179.97438 * 20 19 18 23 23 N 1.31628 * 119.99902 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00093 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47087 * 90.00108 * 24 22 20 26 26 H 1.48500 * 109.46860 * 209.99743 * 24 22 20 27 27 H 1.48498 * 109.47122 * 329.99945 * 24 22 20 28 28 C 1.46924 * 118.74444 * 306.39259 * 15 14 13 29 29 H 1.08996 * 109.47160 * 300.00014 * 1 2 3 30 30 H 1.09007 * 109.47196 * 59.99703 * 1 2 3 31 31 H 1.08994 * 109.46954 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47192 * 240.00701 * 2 1 3 33 33 H 1.08999 * 109.47093 * 120.00043 * 2 1 3 34 34 H 1.09003 * 109.46869 * 59.99871 * 3 2 1 35 35 H 1.08999 * 109.47242 * 299.99951 * 3 2 1 36 36 H 1.09000 * 110.37463 * 265.19889 * 5 4 3 37 37 H 1.08997 * 110.37138 * 27.42076 * 5 4 3 38 38 H 1.09002 * 110.99080 * 81.02425 * 6 5 4 39 39 H 1.08997 * 110.99639 * 204.80053 * 6 5 4 40 40 H 1.08996 * 110.70551 * 277.27020 * 7 6 5 41 41 H 1.08999 * 110.70710 * 154.03290 * 7 6 5 42 42 H 1.09004 * 109.45906 * 61.32744 * 12 10 8 43 43 H 1.09001 * 109.46140 * 301.37326 * 12 10 8 44 44 H 1.08995 * 109.49771 * 178.68474 * 13 12 10 45 45 H 1.09000 * 109.52097 * 58.60032 * 13 12 10 46 46 H 1.08997 * 109.58447 * 294.84151 * 14 13 12 47 47 H 1.09005 * 109.70314 * 174.49186 * 14 13 12 48 48 H 1.09001 * 109.46866 * 300.00058 * 18 16 15 49 49 H 1.08993 * 109.47147 * 60.00322 * 18 16 15 50 50 H 0.97007 * 120.00153 * 180.02562 * 23 22 20 51 51 H 1.08994 * 109.59432 * 173.39567 * 28 15 14 52 52 H 1.09006 * 109.58301 * 293.82659 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0384 0.6454 -1.1275 6 6 5.3441 1.3674 -1.5439 7 6 4.9553 2.8564 -1.3470 8 6 4.0373 2.8149 -0.1072 9 1 4.6076 3.0633 0.7878 10 6 2.8836 3.8048 -0.2806 11 1 2.1095 3.3558 -0.9029 12 6 2.2989 4.1529 1.0903 13 6 1.1233 5.1169 0.9155 14 6 1.6207 6.4090 0.2597 15 7 2.3130 6.0685 -0.9906 16 6 1.9531 6.6461 -2.1540 17 8 2.5326 6.3570 -3.1794 18 6 0.8306 7.6512 -2.1807 19 16 0.5884 8.2404 -3.8749 20 6 -0.7419 9.3673 -3.6198 21 1 -1.1468 9.5092 -2.6286 22 6 -1.2688 10.0732 -4.6923 23 7 -0.7750 9.9006 -5.9002 24 14 -2.6787 11.2684 -4.4216 25 1 -2.1338 12.6170 -4.1220 26 1 -3.5146 11.3335 -5.6473 27 1 -3.5084 10.8050 -3.2806 28 6 3.4010 5.0820 -0.9499 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 4.2544 -0.3727 -0.8037 37 1 3.3273 0.6372 -1.9536 38 1 6.1698 1.0895 -0.8889 39 1 5.5889 1.1617 -2.5859 40 1 4.4135 3.2312 -2.2154 41 1 5.8396 3.4630 -1.1517 42 1 3.0670 4.6243 1.7036 43 1 1.9524 3.2424 1.5792 44 1 0.6928 5.3461 1.8903 45 1 0.3654 4.6560 0.2822 46 1 2.3108 6.9180 0.9325 47 1 0.7742 7.0606 0.0431 48 1 -0.0864 7.1812 -1.8252 49 1 1.0812 8.4930 -1.5353 50 1 -1.1430 10.3943 -6.6498 51 1 3.7277 4.8559 -1.9649 52 1 4.2363 5.4828 -0.3756 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120319742.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:51 Heat of formation + Delta-G solvation = -50.980920 kcal Electronic energy + Delta-G solvation = -28657.884230 eV Core-core repulsion = 24975.464144 eV Total energy + Delta-G solvation = -3682.420086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.76158 -40.43554 -38.03878 -35.50692 -34.60670 -34.41292 -32.70688 -31.71700 -30.89201 -28.37807 -27.69721 -26.42551 -26.20536 -24.32625 -23.09922 -22.28076 -21.45784 -20.48016 -20.01503 -19.47073 -18.20126 -17.39902 -16.90273 -16.87192 -16.75846 -16.45783 -16.35368 -15.82828 -15.54292 -15.19354 -14.67752 -14.58455 -14.53093 -14.33407 -14.31023 -13.86984 -13.72305 -13.56031 -13.40104 -13.18161 -13.17528 -12.90367 -12.84898 -12.67304 -12.59491 -12.35867 -12.10758 -12.00209 -11.86101 -11.82241 -11.73428 -11.59923 -11.35657 -11.20961 -11.15890 -11.15293 -10.84392 -10.28603 -9.67936 -9.20138 -8.69892 -8.36156 -6.15065 1.23660 1.41555 1.44431 1.53763 1.55617 2.08606 2.25805 2.97220 2.98013 3.23133 3.53775 3.59998 3.72834 3.76087 3.86162 3.99782 4.00597 4.09059 4.14465 4.21504 4.23232 4.27912 4.32815 4.41389 4.46718 4.50417 4.54165 4.57126 4.66101 4.69204 4.77242 4.79394 4.85825 4.88945 4.91852 4.95705 5.03378 5.05515 5.11234 5.16237 5.16675 5.25185 5.33717 5.37205 5.39843 5.44099 5.51139 5.55845 6.04050 6.12842 6.18055 6.28144 7.04847 7.11670 8.73173 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015837 B = 0.002529 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.629109 B =11069.765363 C =11431.167453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C 0.035 3.965 4 N -0.521 5.521 5 C 0.039 3.961 6 C -0.126 4.126 7 C -0.147 4.147 8 C 0.086 3.914 9 H 0.100 0.900 10 C -0.119 4.119 11 H 0.069 0.931 12 C -0.111 4.111 13 C -0.130 4.130 14 C 0.097 3.903 15 N -0.606 5.606 16 C 0.531 3.469 17 O -0.569 6.569 18 C -0.122 4.122 19 S -0.153 6.153 20 C -0.545 4.545 21 H 0.083 0.917 22 C 0.013 3.987 23 N -0.912 5.912 24 Si 1.000 3.000 25 H -0.267 1.267 26 H -0.278 1.278 27 H -0.257 1.257 28 C 0.118 3.882 29 H 0.061 0.939 30 H 0.043 0.957 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.025 0.975 36 H 0.088 0.912 37 H 0.033 0.967 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.052 0.948 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.103 0.897 45 H 0.053 0.947 46 H 0.091 0.909 47 H 0.085 0.915 48 H 0.105 0.895 49 H 0.107 0.893 50 H 0.271 0.729 51 H 0.068 0.932 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.584 -18.445 20.526 28.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.092 4.092 4 N -0.244 5.244 5 C -0.089 4.089 6 C -0.164 4.164 7 C -0.185 4.185 8 C -0.022 4.022 9 H 0.118 0.882 10 C -0.139 4.139 11 H 0.087 0.913 12 C -0.148 4.148 13 C -0.168 4.168 14 C -0.025 4.025 15 N -0.339 5.339 16 C 0.318 3.682 17 O -0.448 6.448 18 C -0.273 4.273 19 S 0.074 5.926 20 C -0.693 4.693 21 H 0.101 0.899 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.192 1.192 26 H -0.203 1.203 27 H -0.181 1.181 28 C -0.005 4.005 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.113 0.887 35 H 0.043 0.957 36 H 0.106 0.894 37 H 0.052 0.948 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.070 0.930 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.121 0.879 45 H 0.072 0.928 46 H 0.110 0.890 47 H 0.104 0.896 48 H 0.123 0.877 49 H 0.125 0.875 50 H 0.080 0.920 51 H 0.087 0.913 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.593 -19.060 19.340 28.481 hybrid contribution -1.687 1.479 -0.358 2.271 sum 6.906 -17.581 18.982 26.779 Atomic orbital electron populations 1.21728 0.95201 1.02179 1.01737 1.21567 0.95932 0.95967 1.02344 1.22763 0.87770 0.97445 1.01201 1.63941 1.07772 1.10107 1.42582 1.23093 0.95443 0.98609 0.91715 1.22697 0.97687 0.94067 1.01974 1.22988 1.00020 0.97855 0.97680 1.22439 0.94023 0.87203 0.98548 0.88187 1.22130 0.98674 0.94563 0.98547 0.91330 1.21804 0.97879 1.00047 0.95051 1.21908 0.98126 0.94869 1.01884 1.22078 0.97716 0.98405 0.84295 1.48124 1.36234 1.42159 1.07397 1.20155 0.83481 0.81243 0.83283 1.90665 1.55931 1.63903 1.34269 1.23356 1.00051 1.00784 1.03132 1.85597 1.46498 1.53876 1.06640 1.23180 1.20238 1.28023 0.97820 0.89908 1.26148 1.00365 0.98753 0.93910 1.70189 1.42582 1.41698 1.00351 0.84940 0.76959 0.77729 0.78273 1.19229 1.20301 1.18090 1.21769 0.88915 0.88067 1.01730 0.91996 0.93831 0.91817 0.92611 0.90879 0.88710 0.95727 0.89389 0.94823 0.89590 0.90740 0.92971 0.89648 0.90126 0.89639 0.87861 0.92847 0.89041 0.89631 0.87725 0.87468 0.91980 0.91344 0.89892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 71.98 0.71 -1.37 16 2 C -0.12 -1.77 5.73 30.59 0.18 -1.59 16 3 C 0.04 0.59 3.70 86.30 0.32 0.91 16 4 N -0.52 -8.66 5.27 -860.57 -4.54 -13.20 16 5 C 0.04 0.64 5.34 86.77 0.46 1.10 16 6 C -0.13 -1.93 7.08 31.98 0.23 -1.71 16 7 C -0.15 -2.61 5.39 31.78 0.17 -2.44 16 8 C 0.09 1.42 3.22 45.26 0.15 1.57 16 9 H 0.10 1.45 7.97 -2.39 -0.02 1.43 16 10 C -0.12 -2.22 1.53 -10.71 -0.02 -2.23 16 11 H 0.07 1.61 5.15 -2.39 -0.01 1.60 16 12 C -0.11 -1.52 4.72 30.62 0.14 -1.38 16 13 C -0.13 -1.94 6.08 30.67 0.19 -1.75 16 14 C 0.10 1.88 6.34 86.36 0.55 2.43 16 15 N -0.61 -16.86 2.97 -818.90 -2.43 -19.29 16 16 C 0.53 20.80 7.72 87.66 0.68 21.48 16 17 O -0.57 -27.54 15.27 -3.04 -0.05 -27.59 16 18 C -0.12 -5.03 4.50 71.24 0.32 -4.71 16 19 S -0.15 -8.69 20.57 -56.49 -1.16 -9.85 16 20 C -0.54 -31.36 9.50 67.95 0.65 -30.71 16 21 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 22 C 0.01 0.74 5.49 84.86 0.47 1.21 16 23 N -0.91 -56.46 13.22 21.65 0.29 -56.18 16 24 Si 1.00 43.68 29.55 68.60 2.03 45.71 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 26 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 27 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 28 C 0.12 2.82 4.90 86.36 0.42 3.24 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.87 6.77 -2.39 -0.02 0.85 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.10 1.42 4.84 -2.39 -0.01 1.41 16 35 H 0.02 0.52 5.81 -2.39 -0.01 0.51 16 36 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.03 0.63 7.35 -2.39 -0.02 0.62 16 38 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.05 1.20 6.26 -2.39 -0.01 1.18 16 41 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.08 0.92 8.14 -2.38 -0.02 0.91 16 43 H 0.09 1.05 5.31 -2.39 -0.01 1.04 16 44 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.09 1.39 8.14 -2.39 -0.02 1.38 16 47 H 0.09 1.74 5.93 -2.38 -0.01 1.73 16 48 H 0.10 3.94 7.70 -2.40 -0.02 3.92 16 49 H 0.11 3.99 7.93 -2.40 -0.02 3.97 16 50 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 51 H 0.07 2.06 5.12 -2.39 -0.01 2.05 16 52 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -75.09 397.45 0.64 -74.45 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.89 Total: 21.92 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: 5.61 Total: -15.97 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -6.69 Total: -88.67 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.05 Total: -27.59 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.85 kcal Total: -75.09 0.64 -74.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120319742.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.474 kcal (2) G-P(sol) polarization free energy of solvation -75.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds