Wall clock time and date at job start Sat Apr 11 2020 06:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47035 * 2 1 4 4 N 1.46897 * 109.47409 * 180.02562 * 3 2 1 5 5 C 1.47444 * 111.00190 * 69.15517 * 4 3 2 6 6 C 1.54311 * 107.23252 * 123.25951 * 5 4 3 7 7 C 1.55143 * 103.02100 * 22.28487 * 6 5 4 8 8 C 1.47847 * 111.00167 * 190.00356 * 4 3 2 9 9 H 1.08996 * 110.37253 * 332.56959 * 8 4 3 10 10 C 1.52999 * 110.37661 * 94.80707 * 8 4 3 11 11 H 1.09005 * 109.52461 * 63.23267 * 10 8 4 12 12 C 1.53039 * 109.49511 * 303.15158 * 10 8 4 13 13 C 1.53042 * 109.53691 * 178.68063 * 12 10 8 14 14 C 1.53197 * 109.31116 * 61.36633 * 13 12 10 15 15 N 1.46923 * 108.77606 * 305.36568 * 14 13 12 16 16 C 1.34776 * 120.63245 * 233.58354 * 15 14 13 17 17 O 1.21282 * 120.00282 * 179.97438 * 16 15 14 18 18 C 1.50697 * 119.99725 * 359.97438 * 16 15 14 19 19 S 1.80995 * 109.47148 * 179.97438 * 18 16 15 20 20 C 1.76204 * 100.00114 * 179.97438 * 19 18 16 21 21 H 1.08000 * 119.99704 * 0.02562 * 20 19 18 22 22 C 1.38797 * 119.99860 * 180.02562 * 20 19 18 23 23 N 1.31629 * 120.00274 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99828 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47495 * 179.97438 * 24 22 20 26 26 H 1.48501 * 109.47089 * 299.99620 * 24 22 20 27 27 H 1.48500 * 109.47520 * 59.99742 * 24 22 20 28 28 C 1.46935 * 118.74012 * 53.85589 * 15 14 13 29 29 H 1.08998 * 109.47281 * 59.99953 * 1 2 3 30 30 H 1.09001 * 109.46932 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47294 * 299.99534 * 1 2 3 32 32 H 1.08994 * 109.47419 * 240.00245 * 2 1 3 33 33 H 1.08998 * 109.47281 * 120.00046 * 2 1 3 34 34 H 1.09007 * 109.47097 * 59.99822 * 3 2 1 35 35 H 1.08998 * 109.47124 * 300.00143 * 3 2 1 36 36 H 1.08998 * 109.89280 * 242.66937 * 5 4 3 37 37 H 1.09003 * 109.88268 * 3.69510 * 5 4 3 38 38 H 1.08999 * 110.70450 * 140.66985 * 6 5 4 39 39 H 1.09003 * 110.70788 * 263.90319 * 6 5 4 40 40 H 1.09002 * 110.98951 * 206.25250 * 7 6 5 41 41 H 1.09000 * 110.98700 * 82.43644 * 7 6 5 42 42 H 1.09004 * 109.46203 * 58.66738 * 12 10 8 43 43 H 1.08991 * 109.45176 * 298.69663 * 12 10 8 44 44 H 1.08994 * 109.50010 * 301.41751 * 13 12 10 45 45 H 1.08998 * 109.52678 * 181.33308 * 13 12 10 46 46 H 1.08992 * 109.58803 * 185.57826 * 14 13 12 47 47 H 1.08999 * 109.58438 * 65.14881 * 14 13 12 48 48 H 1.09005 * 109.47275 * 59.99579 * 18 16 15 49 49 H 1.09002 * 109.47402 * 300.00306 * 18 16 15 50 50 H 0.97002 * 120.00082 * 0.02562 * 23 22 20 51 51 H 1.09000 * 109.58420 * 65.92766 * 28 15 14 52 52 H 1.08998 * 109.58712 * 186.35155 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0369 0.9530 -1.2873 6 6 4.9550 2.0561 -1.8542 7 6 5.3444 2.8697 -0.5919 8 6 4.0388 2.8019 0.2391 9 1 3.3280 3.5526 -0.1060 10 6 4.3426 3.0008 1.7254 11 1 5.1254 2.3075 2.0332 12 6 3.0769 2.7386 2.5449 13 6 3.3878 2.9052 4.0341 14 6 3.8458 4.3431 4.2983 15 7 4.9734 4.6513 3.4083 16 6 6.1342 5.1198 3.9077 17 8 7.0579 5.3701 3.1626 18 6 6.2846 5.3327 5.3920 19 16 7.9438 5.9630 5.7461 20 6 7.8453 6.1166 7.4986 21 1 6.9353 5.8469 8.0140 22 6 8.9371 6.5841 8.2168 23 7 10.0464 6.9123 7.5887 24 14 8.8328 6.7463 10.0748 25 1 10.1222 7.2631 10.5998 26 1 7.7406 7.6880 10.4290 27 1 8.5530 5.4162 10.6729 28 6 4.8094 4.4449 1.9628 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 4.6092 0.0389 -1.1297 37 1 3.2145 0.7612 -1.9766 38 1 5.8390 1.6203 -2.3196 39 1 4.4133 2.6816 -2.5638 40 1 5.5890 3.8998 -0.8514 41 1 6.1701 2.3957 -0.0612 42 1 2.7273 1.7232 2.3584 43 1 2.3027 3.4484 2.2540 44 1 4.1796 2.2129 4.3201 45 1 2.4923 2.6954 4.6189 46 1 4.1626 4.4407 5.3366 47 1 3.0240 5.0307 4.0986 48 1 6.1373 4.3858 5.9116 49 1 5.5413 6.0534 5.7328 50 1 10.1007 6.8278 6.6239 51 1 4.0647 5.1408 1.5765 52 1 5.7622 4.6099 1.4598 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120319743.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:56 Heat of formation + Delta-G solvation = -53.599415 kcal Electronic energy + Delta-G solvation = -28204.657744 eV Core-core repulsion = 24522.124111 eV Total energy + Delta-G solvation = -3682.533633 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.47171 -39.30163 -37.01159 -34.94907 -33.29994 -32.51391 -31.81727 -31.00756 -29.59584 -27.62016 -25.87391 -25.25495 -24.69968 -23.26269 -22.44889 -21.05510 -20.56118 -20.05850 -19.01656 -18.15585 -17.00402 -16.73557 -16.03352 -15.71833 -15.35690 -14.98477 -14.74605 -14.36996 -14.32456 -14.06615 -13.82360 -13.51085 -13.41025 -13.32813 -13.24805 -13.03070 -12.97316 -12.61709 -12.38603 -12.07384 -11.97251 -11.89301 -11.68192 -11.64191 -11.45792 -11.33007 -11.22240 -11.04828 -11.02657 -10.91144 -10.89225 -10.52976 -10.33671 -10.16596 -9.54062 -9.41224 -9.00143 -8.63603 -8.49457 -8.19761 -6.65347 -6.60718 -3.98301 2.84695 2.99539 3.33472 3.38711 3.44511 3.58232 3.62230 4.24659 4.25845 4.31599 4.58465 4.63842 4.65575 4.70911 4.73765 4.79002 4.89146 4.98785 5.00773 5.08091 5.12101 5.14056 5.23805 5.24739 5.25686 5.32567 5.37484 5.40440 5.46025 5.49164 5.55861 5.58437 5.64172 5.64900 5.68945 5.72414 5.76284 5.78410 5.84496 5.87298 5.93806 5.95585 6.01681 6.03031 6.12452 6.25940 6.60010 6.72511 6.82140 7.53600 7.92973 8.50733 8.51611 9.28675 10.83187 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021513 B = 0.002242 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.236135 B =12484.727137 C =13392.819485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C 0.043 3.957 4 N -0.523 5.523 5 C 0.043 3.957 6 C -0.143 4.143 7 C -0.127 4.127 8 C 0.081 3.919 9 H 0.055 0.945 10 C -0.083 4.083 11 H 0.082 0.918 12 C -0.113 4.113 13 C -0.135 4.135 14 C 0.107 3.893 15 N -0.617 5.617 16 C 0.534 3.466 17 O -0.519 6.519 18 C -0.127 4.127 19 S -0.118 6.118 20 C -0.606 4.606 21 H 0.065 0.935 22 C 0.035 3.965 23 N -0.884 5.884 24 Si 1.084 2.916 25 H -0.278 1.278 26 H -0.285 1.285 27 H -0.285 1.285 28 C 0.118 3.882 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.030 0.970 36 H 0.076 0.924 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.056 0.944 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.088 0.912 47 H 0.065 0.935 48 H 0.091 0.909 49 H 0.091 0.909 50 H 0.278 0.722 51 H 0.060 0.940 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.924 -12.932 -17.225 30.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.085 4.085 4 N -0.247 5.247 5 C -0.084 4.084 6 C -0.181 4.181 7 C -0.165 4.165 8 C -0.027 4.027 9 H 0.073 0.927 10 C -0.103 4.103 11 H 0.100 0.900 12 C -0.150 4.150 13 C -0.173 4.173 14 C -0.017 4.017 15 N -0.352 5.352 16 C 0.322 3.678 17 O -0.394 6.394 18 C -0.278 4.278 19 S 0.109 5.891 20 C -0.754 4.754 21 H 0.083 0.917 22 C -0.176 4.176 23 N -0.518 5.518 24 Si 0.910 3.090 25 H -0.203 1.203 26 H -0.211 1.211 27 H -0.211 1.211 28 C -0.005 4.005 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.049 0.951 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.106 0.894 47 H 0.084 0.916 48 H 0.110 0.890 49 H 0.109 0.891 50 H 0.090 0.910 51 H 0.078 0.922 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.520 -12.433 -16.603 27.807 hybrid contribution -2.516 -0.292 -0.999 2.723 sum -21.037 -12.725 -17.602 30.237 Atomic orbital electron populations 1.21744 0.95728 1.01757 1.01734 1.21515 0.95215 0.96397 1.02650 1.22523 0.87581 0.97305 1.01114 1.63404 1.07352 1.22401 1.31532 1.22818 0.97755 0.98389 0.89475 1.22783 0.99956 0.97585 0.97818 1.22790 0.97490 1.00761 0.95439 1.22492 0.95702 0.89447 0.95080 0.92679 1.21526 0.98575 0.96773 0.93404 0.89951 1.21662 0.96954 1.02198 0.94233 1.21931 1.01704 0.96753 0.96945 1.21744 0.88958 0.96050 0.94931 1.48029 1.13606 1.66546 1.07056 1.20290 0.81315 0.75902 0.90326 1.90682 1.38722 1.49709 1.60248 1.23335 1.05557 1.04746 0.94184 1.84816 1.10157 1.84691 1.09450 1.23690 1.05376 1.55513 0.90868 0.91666 1.26052 0.91375 0.92840 1.07307 1.70797 1.26794 1.42340 1.11877 0.83334 0.76320 0.76680 0.72686 1.20288 1.21146 1.21138 1.21623 1.02466 0.95045 0.81372 0.93002 0.92563 0.92606 0.92226 0.91125 0.89944 0.95133 0.90593 0.92818 0.90681 0.91696 0.90545 0.90155 0.90392 0.92543 0.91258 0.90845 0.89392 0.91629 0.89040 0.89095 0.90988 0.92180 0.88890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.46 16 2 C -0.12 -0.78 5.95 -26.73 -0.16 -0.94 16 3 C 0.04 0.31 3.87 -3.82 -0.01 0.29 16 4 N -0.52 -4.38 4.42 -223.39 -0.99 -5.36 16 5 C 0.04 0.33 6.20 -2.84 -0.02 0.31 16 6 C -0.14 -1.06 6.94 -24.91 -0.17 -1.23 16 7 C -0.13 -1.13 5.82 -24.59 -0.14 -1.27 16 8 C 0.08 0.72 2.10 -66.19 -0.14 0.58 16 9 H 0.06 0.48 7.81 -51.93 -0.41 0.07 16 10 C -0.08 -0.85 2.10 -90.28 -0.19 -1.04 16 11 H 0.08 1.02 8.07 -51.93 -0.42 0.60 16 12 C -0.11 -0.99 3.76 -26.69 -0.10 -1.10 16 13 C -0.14 -1.27 6.08 -26.61 -0.16 -1.44 16 14 C 0.11 1.20 6.34 -3.71 -0.02 1.17 16 15 N -0.62 -8.92 2.97 -172.50 -0.51 -9.44 16 16 C 0.53 10.34 7.72 -10.99 -0.08 10.25 16 17 O -0.52 -11.95 15.27 5.56 0.08 -11.86 16 18 C -0.13 -2.64 4.50 36.00 0.16 -2.48 16 19 S -0.12 -3.21 19.60 -107.50 -2.11 -5.32 16 20 C -0.61 -17.62 9.50 30.94 0.29 -17.32 16 21 H 0.07 1.81 7.80 -52.49 -0.41 1.40 16 22 C 0.03 1.02 5.49 -17.43 -0.10 0.92 16 23 N -0.88 -27.71 13.67 55.49 0.76 -26.95 16 24 Si 1.08 25.07 29.92 -169.99 -5.09 19.99 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.29 -6.24 7.11 56.52 0.40 -5.83 16 28 C 0.12 1.46 5.52 -3.48 -0.02 1.44 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.39 7.09 -51.93 -0.37 0.02 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.59 5.29 -51.93 -0.27 0.32 16 35 H 0.03 0.22 7.98 -51.93 -0.41 -0.19 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.05 0.37 6.87 -51.93 -0.36 0.01 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.82 8.00 -51.93 -0.42 0.40 16 42 H 0.08 0.68 6.14 -51.93 -0.32 0.36 16 43 H 0.06 0.46 7.85 -51.93 -0.41 0.05 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.09 1.02 5.93 -51.93 -0.31 0.72 16 47 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.09 1.78 7.69 -51.91 -0.40 1.38 16 49 H 0.09 1.76 7.94 -51.92 -0.41 1.35 16 50 H 0.28 8.90 7.13 -40.82 -0.29 8.61 16 51 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 52 H 0.09 1.33 6.59 -51.93 -0.34 0.99 16 LS Contribution 404.85 15.07 6.10 6.10 Total: -1.00 -33.93 404.85 -11.66 -45.59 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -9.41 Total: -0.44 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -0.50 Total: -12.30 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: -0.74 Total: -41.75 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.08 Total: -11.86 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -5.09 Total: 19.99 kcal Atomic # 16 Polarization: -3.21 SS G_CDS: -2.11 Total: -5.32 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.93 -11.66 -45.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120319743.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.013 kcal (2) G-P(sol) polarization free energy of solvation -33.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds