Wall clock time and date at job start Sat Apr 11 2020 06:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47035 * 2 1 4 4 N 1.46897 * 109.47409 * 180.02562 * 3 2 1 5 5 C 1.47444 * 111.00190 * 69.15517 * 4 3 2 6 6 C 1.54311 * 107.23252 * 123.25951 * 5 4 3 7 7 C 1.55143 * 103.02100 * 22.28487 * 6 5 4 8 8 C 1.47847 * 111.00167 * 190.00356 * 4 3 2 9 9 H 1.08996 * 110.37253 * 332.56959 * 8 4 3 10 10 C 1.52999 * 110.37661 * 94.80707 * 8 4 3 11 11 H 1.09005 * 109.52461 * 63.23267 * 10 8 4 12 12 C 1.53039 * 109.49511 * 303.15158 * 10 8 4 13 13 C 1.53042 * 109.53691 * 178.68063 * 12 10 8 14 14 C 1.53197 * 109.31116 * 61.36633 * 13 12 10 15 15 N 1.46923 * 108.77606 * 305.36568 * 14 13 12 16 16 C 1.34776 * 120.63245 * 233.58354 * 15 14 13 17 17 O 1.21282 * 120.00282 * 179.97438 * 16 15 14 18 18 C 1.50697 * 119.99725 * 359.97438 * 16 15 14 19 19 S 1.80995 * 109.47148 * 179.97438 * 18 16 15 20 20 C 1.76204 * 100.00114 * 179.97438 * 19 18 16 21 21 H 1.08000 * 119.99704 * 0.02562 * 20 19 18 22 22 C 1.38797 * 119.99860 * 180.02562 * 20 19 18 23 23 N 1.31629 * 120.00274 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99828 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47495 * 179.97438 * 24 22 20 26 26 H 1.48501 * 109.47089 * 299.99620 * 24 22 20 27 27 H 1.48500 * 109.47520 * 59.99742 * 24 22 20 28 28 C 1.46935 * 118.74012 * 53.85589 * 15 14 13 29 29 H 1.08998 * 109.47281 * 59.99953 * 1 2 3 30 30 H 1.09001 * 109.46932 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47294 * 299.99534 * 1 2 3 32 32 H 1.08994 * 109.47419 * 240.00245 * 2 1 3 33 33 H 1.08998 * 109.47281 * 120.00046 * 2 1 3 34 34 H 1.09007 * 109.47097 * 59.99822 * 3 2 1 35 35 H 1.08998 * 109.47124 * 300.00143 * 3 2 1 36 36 H 1.08998 * 109.89280 * 242.66937 * 5 4 3 37 37 H 1.09003 * 109.88268 * 3.69510 * 5 4 3 38 38 H 1.08999 * 110.70450 * 140.66985 * 6 5 4 39 39 H 1.09003 * 110.70788 * 263.90319 * 6 5 4 40 40 H 1.09002 * 110.98951 * 206.25250 * 7 6 5 41 41 H 1.09000 * 110.98700 * 82.43644 * 7 6 5 42 42 H 1.09004 * 109.46203 * 58.66738 * 12 10 8 43 43 H 1.08991 * 109.45176 * 298.69663 * 12 10 8 44 44 H 1.08994 * 109.50010 * 301.41751 * 13 12 10 45 45 H 1.08998 * 109.52678 * 181.33308 * 13 12 10 46 46 H 1.08992 * 109.58803 * 185.57826 * 14 13 12 47 47 H 1.08999 * 109.58438 * 65.14881 * 14 13 12 48 48 H 1.09005 * 109.47275 * 59.99579 * 18 16 15 49 49 H 1.09002 * 109.47402 * 300.00306 * 18 16 15 50 50 H 0.97002 * 120.00082 * 0.02562 * 23 22 20 51 51 H 1.09000 * 109.58420 * 65.92766 * 28 15 14 52 52 H 1.08998 * 109.58712 * 186.35155 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0369 0.9530 -1.2873 6 6 4.9550 2.0561 -1.8542 7 6 5.3444 2.8697 -0.5919 8 6 4.0388 2.8019 0.2391 9 1 3.3280 3.5526 -0.1060 10 6 4.3426 3.0008 1.7254 11 1 5.1254 2.3075 2.0332 12 6 3.0769 2.7386 2.5449 13 6 3.3878 2.9052 4.0341 14 6 3.8458 4.3431 4.2983 15 7 4.9734 4.6513 3.4083 16 6 6.1342 5.1198 3.9077 17 8 7.0579 5.3701 3.1626 18 6 6.2846 5.3327 5.3920 19 16 7.9438 5.9630 5.7461 20 6 7.8453 6.1166 7.4986 21 1 6.9353 5.8469 8.0140 22 6 8.9371 6.5841 8.2168 23 7 10.0464 6.9123 7.5887 24 14 8.8328 6.7463 10.0748 25 1 10.1222 7.2631 10.5998 26 1 7.7406 7.6880 10.4290 27 1 8.5530 5.4162 10.6729 28 6 4.8094 4.4449 1.9628 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 4.6092 0.0389 -1.1297 37 1 3.2145 0.7612 -1.9766 38 1 5.8390 1.6203 -2.3196 39 1 4.4133 2.6816 -2.5638 40 1 5.5890 3.8998 -0.8514 41 1 6.1701 2.3957 -0.0612 42 1 2.7273 1.7232 2.3584 43 1 2.3027 3.4484 2.2540 44 1 4.1796 2.2129 4.3201 45 1 2.4923 2.6954 4.6189 46 1 4.1626 4.4407 5.3366 47 1 3.0240 5.0307 4.0986 48 1 6.1373 4.3858 5.9116 49 1 5.5413 6.0534 5.7328 50 1 10.1007 6.8278 6.6239 51 1 4.0647 5.1408 1.5765 52 1 5.7622 4.6099 1.4598 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120319743.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:55 Heat of formation + Delta-G solvation = -73.928998 kcal Electronic energy + Delta-G solvation = -28205.539301 eV Core-core repulsion = 24522.124111 eV Total energy + Delta-G solvation = -3683.415190 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.48717 -40.33481 -38.16444 -35.51666 -34.75227 -34.37509 -32.70498 -31.63432 -31.04699 -28.48468 -27.13479 -26.45254 -26.09811 -24.13000 -23.10442 -21.94946 -21.20422 -20.84929 -20.60089 -19.82539 -18.30343 -17.62661 -17.11416 -16.79915 -16.62168 -16.11682 -15.68382 -15.64103 -15.53003 -15.27080 -14.88738 -14.65901 -14.48873 -14.37372 -14.13749 -14.07844 -13.90853 -13.71949 -13.60503 -13.53418 -13.26270 -12.73531 -12.62584 -12.60643 -12.24548 -12.14546 -12.09804 -11.95226 -11.84196 -11.82817 -11.68045 -11.56293 -11.53761 -11.32241 -11.11204 -11.09711 -10.91067 -10.32104 -9.71170 -9.24606 -8.92852 -8.88371 -6.28286 1.16436 1.46655 1.51658 1.60810 1.80897 2.00666 2.34003 2.91764 3.02071 3.08833 3.48952 3.60358 3.65217 3.87303 3.91632 4.02707 4.03097 4.09893 4.11714 4.15474 4.24186 4.27174 4.29161 4.34994 4.40733 4.52196 4.54339 4.59066 4.65483 4.69096 4.79433 4.81665 4.85199 4.89220 4.90853 4.95372 4.98610 5.05068 5.11914 5.18009 5.22590 5.29058 5.31702 5.36129 5.43437 5.48527 5.51642 5.63533 6.05756 6.14025 6.20407 6.23736 7.04252 7.06499 8.50427 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021513 B = 0.002242 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.236135 B =12484.727137 C =13392.819485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C 0.044 3.956 4 N -0.533 5.533 5 C 0.044 3.956 6 C -0.137 4.137 7 C -0.131 4.131 8 C 0.088 3.912 9 H 0.066 0.934 10 C -0.073 4.073 11 H 0.054 0.946 12 C -0.106 4.106 13 C -0.129 4.129 14 C 0.097 3.903 15 N -0.603 5.603 16 C 0.530 3.470 17 O -0.568 6.568 18 C -0.102 4.102 19 S -0.197 6.197 20 C -0.612 4.612 21 H 0.075 0.925 22 C -0.020 4.020 23 N -0.913 5.913 24 Si 1.137 2.863 25 H -0.280 1.280 26 H -0.262 1.262 27 H -0.263 1.263 28 C 0.117 3.883 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.051 0.949 45 H 0.101 0.899 46 H 0.085 0.915 47 H 0.093 0.907 48 H 0.106 0.894 49 H 0.109 0.891 50 H 0.260 0.740 51 H 0.083 0.917 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.593 -13.696 -16.785 32.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.083 4.083 4 N -0.257 5.257 5 C -0.083 4.083 6 C -0.176 4.176 7 C -0.169 4.169 8 C -0.021 4.021 9 H 0.084 0.916 10 C -0.093 4.093 11 H 0.073 0.927 12 C -0.144 4.144 13 C -0.168 4.168 14 C -0.025 4.025 15 N -0.337 5.337 16 C 0.318 3.682 17 O -0.447 6.447 18 C -0.253 4.253 19 S 0.030 5.970 20 C -0.760 4.760 21 H 0.094 0.906 22 C -0.223 4.223 23 N -0.548 5.548 24 Si 0.954 3.046 25 H -0.205 1.205 26 H -0.187 1.187 27 H -0.188 1.188 28 C -0.006 4.006 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.052 0.948 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.070 0.930 45 H 0.120 0.880 46 H 0.103 0.897 47 H 0.111 0.889 48 H 0.125 0.875 49 H 0.127 0.873 50 H 0.071 0.929 51 H 0.102 0.898 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -22.264 -13.234 -16.192 30.545 hybrid contribution -1.482 -0.124 -1.244 1.939 sum -23.746 -13.357 -17.436 32.346 Atomic orbital electron populations 1.21719 0.94786 1.02102 1.02063 1.21470 0.95959 0.95857 1.02102 1.22550 0.86597 0.97755 1.01438 1.63358 1.08329 1.21904 1.32155 1.22813 0.98041 0.98098 0.89383 1.22762 1.00226 0.97412 0.97174 1.22773 0.97131 1.00753 0.96288 1.22382 0.95697 0.90198 0.93824 0.91633 1.21386 0.98609 0.94367 0.94923 0.92716 1.21639 0.96260 1.03066 0.93399 1.21914 1.02241 0.94819 0.97780 1.22096 0.88267 0.98018 0.94077 1.48068 1.12767 1.64266 1.08561 1.20085 0.82332 0.76394 0.89406 1.90667 1.40757 1.52355 1.60874 1.23211 1.00964 1.05361 0.95800 1.85069 1.16407 1.85712 1.09861 1.24015 1.05798 1.54890 0.91254 0.90650 1.27870 0.90675 0.91676 1.12096 1.70918 1.28272 1.44673 1.10923 0.82720 0.76910 0.78217 0.66732 1.20547 1.18662 1.18761 1.21778 1.01972 0.97123 0.79698 0.92628 0.92266 0.92292 0.92415 0.92061 0.89553 0.94761 0.91136 0.91688 0.90348 0.90701 0.90723 0.92244 0.89822 0.90677 0.93021 0.88021 0.89706 0.88884 0.87533 0.87257 0.92927 0.89838 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 71.98 0.71 -0.56 16 2 C -0.12 -1.27 5.95 30.59 0.18 -1.08 16 3 C 0.04 0.52 3.87 86.30 0.33 0.86 16 4 N -0.53 -8.07 4.42 -860.66 -3.80 -11.87 16 5 C 0.04 0.61 6.20 86.64 0.54 1.15 16 6 C -0.14 -1.90 6.94 31.77 0.22 -1.68 16 7 C -0.13 -2.34 5.82 31.98 0.19 -2.16 16 8 C 0.09 1.43 2.10 45.38 0.10 1.53 16 9 H 0.07 0.96 7.81 -2.39 -0.02 0.95 16 10 C -0.07 -1.41 2.10 -10.57 -0.02 -1.43 16 11 H 0.05 1.38 8.07 -2.38 -0.02 1.36 16 12 C -0.11 -1.56 3.76 30.62 0.12 -1.45 16 13 C -0.13 -2.06 6.08 30.67 0.19 -1.87 16 14 C 0.10 1.91 6.34 86.36 0.55 2.46 16 15 N -0.60 -16.84 2.97 -818.07 -2.43 -19.26 16 16 C 0.53 20.74 7.72 87.66 0.68 21.42 16 17 O -0.57 -27.27 15.27 -3.04 -0.05 -27.32 16 18 C -0.10 -4.22 4.50 71.23 0.32 -3.90 16 19 S -0.20 -11.13 19.60 -56.49 -1.11 -12.24 16 20 C -0.61 -35.72 9.50 67.95 0.65 -35.08 16 21 H 0.08 4.11 7.80 -2.91 -0.02 4.08 16 22 C -0.02 -1.18 5.49 84.86 0.47 -0.72 16 23 N -0.91 -58.67 13.67 21.65 0.30 -58.38 16 24 Si 1.14 49.58 29.92 68.60 2.05 51.63 16 25 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 26 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 27 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 28 C 0.12 2.79 5.52 86.50 0.48 3.27 16 29 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.06 0.65 7.09 -2.39 -0.02 0.63 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.09 0.95 5.29 -2.38 -0.01 0.94 16 35 H 0.03 0.39 7.98 -2.39 -0.02 0.38 16 36 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.06 0.76 6.87 -2.39 -0.02 0.74 16 38 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.06 1.29 8.00 -2.39 -0.02 1.28 16 42 H 0.08 1.21 6.14 -2.39 -0.01 1.19 16 43 H 0.07 0.88 7.85 -2.39 -0.02 0.87 16 44 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.08 1.75 5.93 -2.39 -0.01 1.73 16 47 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.11 4.06 7.69 -2.39 -0.02 4.04 16 49 H 0.11 4.10 7.94 -2.39 -0.02 4.08 16 50 H 0.26 17.41 7.13 -92.71 -0.66 16.75 16 51 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 52 H 0.07 2.00 6.59 -2.39 -0.02 1.98 16 Total: -1.00 -76.80 404.85 1.63 -75.17 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.98 Total: 21.52 kcal Atomic # 6 Polarization: -24.93 SS G_CDS: 5.68 Total: -19.25 kcal Atomic # 7 Polarization: -83.58 SS G_CDS: -5.93 Total: -89.52 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.05 Total: -27.32 kcal Atomic # 14 Polarization: 49.58 SS G_CDS: 2.05 Total: 51.63 kcal Atomic # 16 Polarization: -11.13 SS G_CDS: -1.11 Total: -12.24 kcal Total: -76.80 1.63 -75.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120319743.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.246 kcal (2) G-P(sol) polarization free energy of solvation -76.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds