Wall clock time and date at job start Sat Apr 11 2020 06:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47154 * 2 1 4 4 C 1.50698 * 109.47020 * 120.00413 * 2 1 3 5 5 N 1.31074 * 126.66098 * 300.03854 * 4 2 1 6 6 N 1.28843 * 107.98919 * 179.97438 * 5 4 2 7 7 N 1.28737 * 109.40030 * 359.73004 * 6 5 4 8 8 N 1.29023 * 108.80761 * 0.44121 * 7 6 5 9 9 C 1.46497 * 126.44124 * 179.83324 * 8 7 6 10 10 C 1.50706 * 109.47210 * 269.69206 * 9 8 7 11 11 O 1.21282 * 119.99593 * 359.97438 * 10 9 8 12 12 N 1.34766 * 120.00154 * 179.97438 * 10 9 8 13 13 C 1.46505 * 120.00019 * 0.02562 * 12 10 9 14 14 C 1.46500 * 120.00025 * 179.97438 * 12 10 9 15 15 C 1.53000 * 109.47410 * 270.00316 * 14 12 10 16 16 H 1.08998 * 109.47025 * 60.00571 * 15 14 12 17 17 O 1.42899 * 109.47060 * 299.99804 * 15 14 12 18 18 C 1.53005 * 109.46903 * 180.02562 * 15 14 12 19 19 N 1.46500 * 109.46822 * 185.00335 * 18 15 14 20 20 C 1.46499 * 120.00406 * 89.99880 * 19 18 15 21 21 C 1.36942 * 120.00004 * 269.99988 * 19 18 15 22 22 H 1.07998 * 119.99717 * 22.92576 * 21 19 18 23 23 C 1.38804 * 120.00185 * 202.92983 * 21 19 18 24 24 N 1.31627 * 119.99957 * 13.12133 * 23 21 19 25 25 Si 1.86803 * 120.00298 * 193.11974 * 23 21 19 26 26 H 1.48503 * 109.46859 * 0.02562 * 25 23 21 27 27 H 1.48493 * 109.47136 * 119.99973 * 25 23 21 28 28 H 1.48497 * 109.47002 * 240.00378 * 25 23 21 29 29 H 1.09003 * 109.46840 * 299.99290 * 1 2 3 30 30 H 1.08994 * 109.47648 * 59.99470 * 1 2 3 31 31 H 1.08998 * 109.47511 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46790 * 240.00161 * 2 1 3 33 33 H 1.09002 * 109.47571 * 300.00658 * 3 2 1 34 34 H 1.09001 * 109.47141 * 60.00376 * 3 2 1 35 35 H 1.08997 * 109.47056 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.47192 * 149.68877 * 9 8 7 37 37 H 1.09006 * 109.46933 * 29.68779 * 9 8 7 38 38 H 1.08996 * 109.46946 * 269.99750 * 13 12 10 39 39 H 1.09004 * 109.47114 * 29.99659 * 13 12 10 40 40 H 1.09001 * 109.46988 * 149.99465 * 13 12 10 41 41 H 1.08996 * 109.47310 * 30.00734 * 14 12 10 42 42 H 1.09005 * 109.47070 * 150.00175 * 14 12 10 43 43 H 0.96693 * 114.00436 * 299.99794 * 17 15 14 44 44 H 1.08998 * 109.47294 * 304.99815 * 18 15 14 45 45 H 1.09001 * 109.47183 * 65.00228 * 18 15 14 46 46 H 1.08993 * 109.46892 * 95.12186 * 20 19 18 47 47 H 1.09001 * 109.47533 * 215.12696 * 20 19 18 48 48 H 1.09001 * 109.46824 * 335.12844 * 20 19 18 49 49 H 0.96998 * 119.99440 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7969 -0.3789 2.4765 6 7 2.3980 -1.2296 3.2349 7 7 3.0061 -2.0984 2.5050 8 7 2.8093 -1.8092 1.2631 9 6 3.3286 -2.5423 0.1060 10 6 4.6668 -1.9734 -0.2899 11 8 5.1398 -1.0464 0.3329 12 7 5.3378 -2.4947 -1.3360 13 6 4.7661 -3.6141 -2.0886 14 6 6.6384 -1.9412 -1.7212 15 6 6.4334 -0.8188 -2.7405 16 1 5.8212 -0.0332 -2.2976 17 8 5.7762 -1.3401 -3.8973 18 6 7.7919 -0.2413 -3.1432 19 7 7.5905 0.9102 -4.0263 20 6 7.4620 2.2548 -3.4591 21 6 7.5224 0.7296 -5.3820 22 1 7.2467 -0.2336 -5.7853 23 6 7.8077 1.7845 -6.2379 24 7 8.3877 2.8708 -5.7730 25 14 7.3687 1.6625 -8.0495 26 1 6.7295 0.3490 -8.3165 27 1 6.4253 2.7529 -8.4047 28 1 8.6019 1.7888 -8.8672 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4424 -0.0005 36 1 2.6323 -2.4468 -0.7271 37 1 3.4435 -3.5950 0.3646 38 1 5.0924 -4.5546 -1.6447 39 1 3.6781 -3.5554 -2.0568 40 1 5.1025 -3.5650 -3.1243 41 1 7.1398 -1.5437 -0.8388 42 1 7.2508 -2.7268 -2.1640 43 1 6.2653 -2.0448 -4.3435 44 1 8.3311 0.0755 -2.2505 45 1 8.3701 -1.0033 -3.6658 46 1 8.4338 2.7482 -3.4704 47 1 6.7538 2.8333 -4.0523 48 1 7.1029 2.1832 -2.4324 49 1 8.5874 3.6078 -6.3712 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755806527.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:25 Heat of formation + Delta-G solvation = 62.160744 kcal Electronic energy + Delta-G solvation = -31157.527447 eV Core-core repulsion = 26966.013089 eV Total energy + Delta-G solvation = -4191.514359 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.201 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.34756 -40.37630 -37.70088 -36.40878 -35.69002 -35.52647 -34.63025 -31.75799 -31.49871 -30.42698 -28.98118 -27.47794 -27.15853 -25.98815 -25.49160 -24.60546 -23.49228 -22.25437 -20.97136 -20.59309 -19.87140 -18.22844 -17.80275 -16.92468 -16.60893 -16.51533 -16.18925 -15.66063 -15.30653 -15.04262 -14.85969 -14.68213 -14.24005 -13.80747 -13.55013 -13.51872 -13.42224 -13.28543 -12.96444 -12.90971 -12.73312 -12.46760 -12.33336 -11.98488 -11.93719 -11.73652 -11.62316 -11.51143 -11.46684 -11.14423 -11.10588 -10.90738 -10.75488 -10.68053 -10.42489 -10.31408 -10.13109 -9.97505 -9.95455 -9.81129 -8.84122 -8.48668 -6.72369 -5.71364 -3.17748 1.00212 1.57769 2.08536 2.13888 2.62679 3.36512 3.43566 3.45619 3.62979 3.80516 3.83322 4.14535 4.30949 4.47652 4.66146 4.67282 4.76955 4.78252 4.89808 4.92454 5.09797 5.16861 5.24229 5.35725 5.38161 5.43133 5.43356 5.52696 5.58818 5.62711 5.65606 5.72347 5.80469 5.87157 5.91479 5.93338 6.06294 6.20148 6.42377 6.63208 6.75530 6.92978 7.35835 7.67133 7.71632 7.82333 8.09057 8.39605 8.47780 9.22846 9.85772 10.34885 11.33618 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.014399 B = 0.002886 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.144134 B = 9700.134190 C =10370.121095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.012 4.012 3 C -0.144 4.144 4 C 0.207 3.793 5 N -0.300 5.300 6 N -0.074 5.074 7 N -0.089 5.089 8 N -0.296 5.296 9 C 0.094 3.906 10 C 0.498 3.502 11 O -0.517 6.517 12 N -0.595 5.595 13 C 0.073 3.927 14 C 0.082 3.918 15 C 0.072 3.928 16 H 0.091 0.909 17 O -0.544 6.544 18 C 0.126 3.874 19 N -0.593 5.593 20 C 0.162 3.838 21 C -0.242 4.242 22 H 0.070 0.930 23 C -0.003 4.003 24 N -0.910 5.910 25 Si 0.904 3.096 26 H -0.278 1.278 27 H -0.291 1.291 28 H -0.292 1.292 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.360 0.640 44 H 0.044 0.956 45 H 0.051 0.949 46 H 0.032 0.968 47 H 0.041 0.959 48 H -0.004 1.004 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.921 -14.646 8.124 21.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.034 4.034 3 C -0.203 4.203 4 C -0.071 4.071 5 N -0.149 5.149 6 N -0.067 5.067 7 N -0.074 5.074 8 N -0.096 5.096 9 C -0.032 4.032 10 C 0.282 3.718 11 O -0.392 6.392 12 N -0.328 5.328 13 C -0.070 4.070 14 C -0.041 4.041 15 C 0.008 3.992 16 H 0.109 0.891 17 O -0.348 6.348 18 C -0.004 4.004 19 N -0.314 5.314 20 C 0.017 3.983 21 C -0.371 4.371 22 H 0.087 0.913 23 C -0.201 4.201 24 N -0.555 5.555 25 Si 0.735 3.265 26 H -0.204 1.204 27 H -0.218 1.218 28 H -0.219 1.219 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.156 0.844 37 H 0.158 0.842 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.101 0.899 43 H 0.206 0.794 44 H 0.062 0.938 45 H 0.069 0.931 46 H 0.050 0.950 47 H 0.059 0.941 48 H 0.015 0.985 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.928 -13.697 9.972 21.312 hybrid contribution 0.379 -0.543 -2.194 2.292 sum -12.548 -14.240 7.778 20.512 Atomic orbital electron populations 1.21850 0.91912 1.02528 1.03826 1.19824 0.97298 0.96845 0.89399 1.21831 1.02213 0.92752 1.03477 1.26136 0.94445 0.88493 0.98026 1.74959 1.20724 1.20847 0.98338 1.78586 1.06863 0.98841 1.22441 1.78856 1.19314 1.22050 0.87218 1.47879 1.33976 1.20985 1.06806 1.22045 0.96438 0.98436 0.86235 1.20219 0.86298 0.84088 0.81185 1.90839 1.67957 1.27714 1.52663 1.47660 1.21043 1.34389 1.29698 1.21969 0.98798 0.88090 0.98180 1.22483 0.82996 0.97942 1.00654 1.23258 0.98280 0.93346 0.84277 0.89084 1.86629 1.48778 1.56807 1.42536 1.21295 0.92745 0.91836 0.94492 1.43754 1.83804 1.01281 1.02583 1.20804 0.99805 0.85840 0.91819 1.19184 1.39081 0.97717 0.81156 0.91271 1.25032 0.99431 0.97651 0.97961 1.70087 1.44481 1.06922 1.34047 0.86188 0.77576 0.77418 0.85339 1.20359 1.21752 1.21937 0.90943 0.90605 0.92514 0.89129 0.90625 0.91113 0.91727 0.84392 0.84171 0.92202 0.91345 0.89327 0.89078 0.89887 0.79398 0.93760 0.93078 0.94991 0.94067 0.98549 0.93898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.18 37.16 0.34 -0.67 16 2 C -0.01 -0.11 3.26 -91.77 -0.30 -0.41 16 3 C -0.14 -1.49 9.18 37.15 0.34 -1.15 16 4 C 0.21 2.53 6.64 -155.42 -1.03 1.49 16 5 N -0.30 -4.45 12.36 32.70 0.40 -4.05 16 6 N -0.07 -1.18 13.43 60.35 0.81 -0.37 16 7 N -0.09 -1.29 13.29 60.35 0.80 -0.49 16 8 N -0.30 -3.50 2.83 -59.44 -0.17 -3.67 16 9 C 0.09 0.73 5.12 -5.19 -0.03 0.70 16 10 C 0.50 5.67 7.74 -10.99 -0.09 5.59 16 11 O -0.52 -8.49 16.01 5.56 0.09 -8.40 16 12 N -0.59 -5.71 2.80 -181.57 -0.51 -6.21 16 13 C 0.07 0.39 9.98 59.85 0.60 0.99 16 14 C 0.08 0.95 5.10 -4.04 -0.02 0.92 16 15 C 0.07 1.11 3.48 -26.73 -0.09 1.02 16 16 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 17 O -0.54 -8.35 11.29 -35.23 -0.40 -8.75 16 18 C 0.13 2.34 5.32 -4.04 -0.02 2.32 16 19 N -0.59 -14.41 2.90 -181.12 -0.53 -14.93 16 20 C 0.16 4.03 8.98 59.85 0.54 4.57 16 21 C -0.24 -6.39 9.21 -15.06 -0.14 -6.53 16 22 H 0.07 1.76 7.58 -52.49 -0.40 1.36 16 23 C 0.00 -0.09 5.10 -17.43 -0.09 -0.17 16 24 N -0.91 -26.48 10.71 55.49 0.59 -25.88 16 25 Si 0.90 21.56 29.57 -169.99 -5.03 16.54 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.69 6.85 -51.93 -0.36 0.33 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.14 0.58 6.39 -51.93 -0.33 0.25 16 37 H 0.14 0.66 8.11 -51.93 -0.42 0.24 16 38 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 39 H 0.07 0.22 6.44 -51.93 -0.33 -0.12 16 40 H 0.09 0.50 6.88 -51.93 -0.36 0.14 16 41 H 0.09 1.19 7.42 -51.93 -0.39 0.81 16 42 H 0.08 0.75 8.07 -51.93 -0.42 0.33 16 43 H 0.36 4.36 8.79 45.56 0.40 4.76 16 44 H 0.04 0.80 8.07 -51.93 -0.42 0.38 16 45 H 0.05 0.90 8.04 -51.93 -0.42 0.48 16 46 H 0.03 0.86 7.34 -51.93 -0.38 0.48 16 47 H 0.04 1.10 7.34 -51.93 -0.38 0.72 16 48 H 0.00 -0.09 8.03 -51.93 -0.42 -0.51 16 49 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 403.59 15.07 6.08 6.08 Total: -1.00 -37.23 403.59 -4.97 -42.20 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -7.13 Total: -0.73 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: 0.01 Total: 8.66 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: 1.41 Total: -55.60 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.31 Total: -17.15 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -37.23 -4.97 -42.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755806527.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.358 kcal (2) G-P(sol) polarization free energy of solvation -37.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds