Wall clock time and date at job start Sat Apr 11 2020 06:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47384 * 2 1 4 4 S 1.81404 * 109.46870 * 119.99728 * 2 1 3 5 5 C 1.81404 * 103.00005 * 174.99835 * 4 2 1 6 6 C 1.50702 * 109.46823 * 180.02562 * 5 4 2 7 7 O 1.21278 * 120.00378 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99631 * 180.02562 * 6 5 4 9 9 C 1.46918 * 120.62966 * 359.97438 * 8 6 5 10 10 C 1.53193 * 108.77635 * 233.60902 * 9 8 6 11 11 C 1.53035 * 109.31269 * 305.36742 * 10 9 8 12 12 C 1.53043 * 109.53864 * 61.36747 * 11 10 9 13 13 H 1.08999 * 109.49766 * 58.61567 * 12 11 10 14 14 C 1.52995 * 109.49778 * 178.68306 * 12 11 10 15 15 H 1.09001 * 110.00034 * 305.08172 * 14 12 11 16 16 C 1.54336 * 109.99286 * 184.04102 * 14 12 11 17 17 C 1.55153 * 103.02305 * 218.66744 * 16 14 12 18 18 C 1.54903 * 101.58361 * 35.30520 * 17 16 14 19 19 N 1.47025 * 109.88372 * 66.17701 * 14 12 11 20 20 C 1.36934 * 125.64599 * 298.39054 * 19 14 12 21 21 H 1.07996 * 120.00175 * 334.69749 * 20 19 14 22 22 C 1.38819 * 119.99911 * 154.69548 * 20 19 14 23 23 N 1.31615 * 119.99999 * 334.42392 * 22 20 19 24 24 Si 1.86802 * 119.99862 * 154.42102 * 22 20 19 25 25 H 1.48493 * 109.47089 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46581 * 240.00305 * 24 22 20 27 27 H 1.48502 * 109.47001 * 120.00242 * 24 22 20 28 28 C 1.46926 * 120.62665 * 180.02562 * 8 6 5 29 29 H 1.08995 * 109.47146 * 300.00258 * 1 2 3 30 30 H 1.08998 * 109.46677 * 59.99951 * 1 2 3 31 31 H 1.08994 * 109.47085 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47589 * 239.99496 * 2 1 3 33 33 H 1.08998 * 109.47253 * 299.99696 * 3 2 1 34 34 H 1.09004 * 109.47015 * 59.99940 * 3 2 1 35 35 H 1.09002 * 109.47218 * 179.97438 * 3 2 1 36 36 H 1.08993 * 109.46933 * 60.00462 * 5 4 2 37 37 H 1.08996 * 109.47182 * 299.99800 * 5 4 2 38 38 H 1.09004 * 109.58383 * 113.82315 * 9 8 6 39 39 H 1.09006 * 109.70931 * 353.47171 * 9 8 6 40 40 H 1.09009 * 109.49874 * 185.41553 * 10 9 8 41 41 H 1.08998 * 109.52025 * 65.33943 * 10 9 8 42 42 H 1.08999 * 109.46322 * 301.34399 * 11 10 9 43 43 H 1.09004 * 109.45030 * 181.37662 * 11 10 9 44 44 H 1.08997 * 110.84968 * 100.19650 * 16 14 12 45 45 H 1.09005 * 110.66557 * 337.04868 * 16 14 12 46 46 H 1.09005 * 111.00315 * 277.22990 * 17 16 14 47 47 H 1.09004 * 111.03852 * 153.39490 * 17 16 14 48 48 H 1.09003 * 110.36647 * 204.15516 * 18 17 16 49 49 H 1.09006 * 110.36976 * 81.83095 * 18 17 16 50 50 H 0.97004 * 119.99990 * 354.28777 * 23 22 20 51 51 H 1.08993 * 109.59096 * 6.60170 * 28 8 6 52 52 H 1.08998 * 109.58155 * 246.17309 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 16 2.1346 -0.8551 1.4812 5 6 3.9308 -0.8875 1.2291 6 6 4.5893 -1.5785 2.3953 7 8 3.9135 -2.0074 3.3065 8 7 5.9293 -1.7200 2.4256 9 6 6.7612 -1.2062 1.3290 10 6 7.6506 -2.3411 0.8115 11 6 8.4442 -2.9343 1.9778 12 6 7.4771 -3.5126 3.0133 13 1 6.8566 -4.2766 2.5449 14 6 8.2720 -4.1345 4.1631 15 1 8.9766 -4.8697 3.7744 16 6 7.3111 -4.8103 5.1641 17 6 7.9476 -4.4770 6.5392 18 6 8.5093 -3.0558 6.2857 19 7 8.9970 -3.0853 4.8948 20 6 9.9614 -2.2672 4.3696 21 1 10.5365 -2.5902 3.5145 22 6 10.1997 -1.0226 4.9364 23 7 9.2446 -0.4089 5.6022 24 14 11.8761 -0.2189 4.7541 25 1 12.7679 -1.1072 3.9663 26 1 12.4648 0.0084 6.0984 27 1 11.7280 1.0814 4.0522 28 6 6.5857 -2.3918 3.5554 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4424 0.0005 36 1 4.3053 0.1332 1.1525 37 1 4.1591 -1.4283 0.3107 38 1 7.3852 -0.3908 1.6949 39 1 6.1236 -0.8446 0.5222 40 1 8.3405 -1.9504 0.0633 41 1 7.0285 -3.1158 0.3632 42 1 9.0477 -2.1536 2.4407 43 1 9.0960 -3.7259 1.6079 44 1 7.2800 -5.8881 5.0047 45 1 6.3119 -4.3815 5.0876 46 1 8.7484 -5.1766 6.7790 47 1 7.1939 -4.4644 7.3266 48 1 9.3302 -2.8445 6.9711 49 1 7.7210 -2.3110 6.3955 50 1 8.3512 -0.7861 5.6271 51 1 5.8305 -2.8142 4.2182 52 1 7.1953 -1.6735 4.1035 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120329657.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:08 Heat of formation + Delta-G solvation = -24.983537 kcal Electronic energy + Delta-G solvation = -29404.652379 eV Core-core repulsion = 25723.359624 eV Total energy + Delta-G solvation = -3681.292755 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.03511 -38.31762 -36.36673 -35.00393 -32.94566 -32.73099 -31.14159 -30.02405 -29.02611 -27.49947 -26.80137 -24.97880 -24.22092 -22.70663 -22.15582 -20.81222 -20.01975 -19.24627 -18.57182 -17.43979 -16.98341 -16.60306 -15.84099 -15.53841 -15.20316 -14.63692 -14.45507 -14.17696 -14.04738 -13.84342 -13.72311 -13.57962 -13.44797 -13.05832 -12.83239 -12.82322 -12.55007 -12.23247 -11.92947 -11.82339 -11.72406 -11.57141 -11.50390 -11.41002 -11.29205 -10.86126 -10.69552 -10.64887 -10.38322 -10.24088 -10.12165 -9.86358 -9.85211 -9.81537 -9.62297 -9.51274 -9.41384 -8.47117 -8.18628 -7.71799 -6.88169 -6.06096 -3.21444 1.37272 2.41700 2.77509 3.29141 3.47307 3.50706 3.62844 4.48260 4.51629 4.54374 4.59294 4.87881 4.94333 4.98297 5.09116 5.19987 5.23946 5.27655 5.30796 5.33716 5.38788 5.44729 5.49476 5.53511 5.58922 5.68807 5.74910 5.78995 5.83751 5.85566 5.91359 5.99332 6.14686 6.21895 6.26013 6.29257 6.36905 6.43086 6.55728 6.62852 6.66141 6.79254 6.93544 7.00831 7.02786 7.13718 7.28006 7.67287 7.87971 8.35314 8.49124 9.02402 9.78872 10.41537 11.21070 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014297 B = 0.003228 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.987613 B = 8672.283440 C = 9429.821641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.083 4.083 3 C -0.149 4.149 4 S -0.182 6.182 5 C -0.123 4.123 6 C 0.526 3.474 7 O -0.529 6.529 8 N -0.598 5.598 9 C 0.108 3.892 10 C -0.131 4.131 11 C -0.126 4.126 12 C -0.098 4.098 13 H 0.049 0.951 14 C 0.164 3.836 15 H 0.037 0.963 16 C -0.132 4.132 17 C -0.137 4.137 18 C 0.142 3.858 19 N -0.591 5.591 20 C -0.325 4.325 21 H 0.062 0.938 22 C -0.023 4.023 23 N -0.913 5.913 24 Si 1.065 2.935 25 H -0.292 1.292 26 H -0.291 1.291 27 H -0.295 1.295 28 C 0.124 3.876 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.053 0.947 42 H 0.112 0.888 43 H 0.050 0.950 44 H 0.058 0.942 45 H 0.066 0.934 46 H 0.061 0.939 47 H 0.059 0.941 48 H 0.045 0.955 49 H 0.026 0.974 50 H 0.271 0.729 51 H 0.079 0.921 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.642 -0.792 -12.712 16.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.212 4.212 3 C -0.208 4.208 4 S 0.045 5.955 5 C -0.275 4.275 6 C 0.312 3.688 7 O -0.406 6.406 8 N -0.331 5.331 9 C -0.016 4.016 10 C -0.169 4.169 11 C -0.163 4.163 12 C -0.119 4.119 13 H 0.067 0.933 14 C 0.057 3.943 15 H 0.055 0.945 16 C -0.170 4.170 17 C -0.175 4.175 18 C 0.016 3.984 19 N -0.317 5.317 20 C -0.453 4.453 21 H 0.080 0.920 22 C -0.226 4.226 23 N -0.553 5.553 24 Si 0.895 3.105 25 H -0.219 1.219 26 H -0.218 1.218 27 H -0.223 1.223 28 C 0.003 3.997 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.130 0.870 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.064 0.936 49 H 0.044 0.956 50 H 0.083 0.917 51 H 0.097 0.903 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.567 -0.058 -10.962 15.225 hybrid contribution -0.023 -0.811 -1.759 1.937 sum -10.589 -0.869 -12.721 16.574 Atomic orbital electron populations 1.21555 0.91694 1.02969 1.02668 1.23244 1.00043 0.98897 0.99016 1.22106 1.01125 0.94602 1.02927 1.87501 1.01911 1.76391 1.29738 1.23560 0.96959 1.05041 1.01897 1.19555 0.82321 0.80065 0.86851 1.90714 1.62530 1.49512 1.37827 1.48087 1.04898 1.57288 1.22847 1.21754 0.93849 0.97220 0.88729 1.21915 0.98485 0.97613 0.98921 1.21908 0.97854 1.02347 0.94233 1.21772 0.96351 0.96424 0.97374 0.93304 1.20998 0.91299 0.91218 0.90826 0.94540 1.22662 0.99042 0.99298 0.95951 1.22782 0.99368 0.99181 0.96199 1.21548 0.96895 0.92475 0.87459 1.44574 1.43221 1.39462 1.04415 1.19602 1.11294 0.97187 1.17246 0.92004 1.25725 1.04505 0.92914 0.99435 1.70733 1.02386 1.38306 1.43899 0.83530 0.75497 0.75269 0.76186 1.21873 1.21794 1.22289 1.21812 0.95405 0.95624 0.86907 0.91596 0.91256 0.91647 0.89730 0.91886 0.91192 0.92602 0.87482 0.87681 0.90595 0.91021 0.91281 0.92775 0.86950 0.93167 0.92284 0.91545 0.92061 0.92195 0.93616 0.95603 0.91712 0.90289 0.88605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.01 9.20 37.16 0.34 -0.67 16 2 C -0.08 -0.75 3.38 -26.73 -0.09 -0.84 16 3 C -0.15 -1.20 9.10 37.16 0.34 -0.86 16 4 S -0.18 -2.42 20.29 -107.50 -2.18 -4.60 16 5 C -0.12 -1.58 4.47 36.01 0.16 -1.41 16 6 C 0.53 9.09 7.72 -10.98 -0.08 9.00 16 7 O -0.53 -11.12 15.28 5.56 0.08 -11.03 16 8 N -0.60 -10.26 2.97 -172.82 -0.51 -10.78 16 9 C 0.11 1.53 6.34 -3.71 -0.02 1.50 16 10 C -0.13 -1.84 6.08 -26.61 -0.16 -2.00 16 11 C -0.13 -2.21 4.55 -26.69 -0.12 -2.33 16 12 C -0.10 -1.80 2.14 -90.54 -0.19 -1.99 16 13 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 14 C 0.16 3.23 2.95 -66.95 -0.20 3.04 16 15 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 16 C -0.13 -2.32 6.31 -24.89 -0.16 -2.48 16 17 C -0.14 -2.49 7.09 -24.59 -0.17 -2.67 16 18 C 0.14 3.18 5.53 -2.53 -0.01 3.17 16 19 N -0.59 -13.58 1.87 -162.56 -0.30 -13.89 16 20 C -0.33 -8.18 7.18 -15.06 -0.11 -8.28 16 21 H 0.06 1.57 7.08 -52.49 -0.37 1.20 16 22 C -0.02 -0.60 5.17 -17.43 -0.09 -0.69 16 23 N -0.91 -25.85 13.06 55.49 0.72 -25.13 16 24 Si 1.06 24.22 29.99 -169.99 -5.10 19.12 16 25 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.30 -6.70 7.11 56.52 0.40 -6.30 16 28 C 0.12 2.44 5.28 -3.75 -0.02 2.42 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.69 8.14 -51.92 -0.42 0.26 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.45 6.92 -51.93 -0.36 0.09 16 36 H 0.11 1.19 6.94 -51.93 -0.36 0.83 16 37 H 0.10 1.11 7.70 -51.93 -0.40 0.71 16 38 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.07 0.77 5.95 -51.93 -0.31 0.46 16 40 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.11 2.36 4.94 -51.93 -0.26 2.10 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.07 1.20 6.11 -51.93 -0.32 0.88 16 46 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 49 H 0.03 0.64 6.72 -51.93 -0.35 0.29 16 50 H 0.27 7.71 5.06 -40.82 -0.21 7.51 16 51 H 0.08 1.67 5.38 -51.93 -0.28 1.39 16 52 H 0.10 2.26 6.10 -51.93 -0.32 1.94 16 LS Contribution 396.42 15.07 5.97 5.97 Total: -1.00 -29.89 396.42 -10.99 -40.88 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -9.09 Total: 4.54 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -0.60 Total: -5.09 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.09 Total: -49.79 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.08 Total: -11.03 kcal Atomic # 14 Polarization: 24.22 SS G_CDS: -5.10 Total: 19.12 kcal Atomic # 16 Polarization: -2.42 SS G_CDS: -2.18 Total: -4.60 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.89 -10.99 -40.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120329657.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.896 kcal (2) G-P(sol) polarization free energy of solvation -29.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds