Wall clock time and date at job start Sat Apr 11 2020 06:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46835 * 2 1 4 4 S 1.81404 * 109.46923 * 180.02562 * 3 2 1 5 5 C 1.81399 * 102.99922 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47177 * 180.02562 * 5 4 3 7 7 O 1.21285 * 120.00123 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00436 * 179.97438 * 6 5 4 9 9 C 1.46928 * 120.62797 * 359.97438 * 8 6 5 10 10 C 1.53183 * 108.77660 * 233.58657 * 9 8 6 11 11 C 1.53045 * 109.31329 * 305.36540 * 10 9 8 12 12 C 1.53034 * 109.53875 * 61.36405 * 11 10 9 13 13 H 1.09002 * 109.49509 * 58.62083 * 12 11 10 14 14 C 1.52999 * 109.49893 * 178.68405 * 12 11 10 15 15 H 1.08998 * 109.87294 * 182.16244 * 14 12 11 16 16 C 1.54324 * 109.88134 * 61.14613 * 14 12 11 17 17 C 1.55157 * 102.94123 * 218.38812 * 16 14 12 18 18 C 1.54907 * 101.58060 * 35.50477 * 17 16 14 19 19 N 1.47020 * 109.88168 * 303.33885 * 14 12 11 20 20 C 1.36933 * 125.64898 * 298.33547 * 19 14 12 21 21 H 1.07999 * 120.00116 * 345.39498 * 20 19 14 22 22 C 1.38813 * 120.00227 * 165.39702 * 20 19 14 23 23 N 1.31618 * 119.99703 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00292 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46702 * 90.00258 * 24 22 20 26 26 H 1.48495 * 109.47265 * 210.00262 * 24 22 20 27 27 H 1.48503 * 109.47179 * 330.00386 * 24 22 20 28 28 C 1.46921 * 120.63636 * 179.71570 * 8 6 5 29 29 H 1.08999 * 109.47253 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47208 * 60.00214 * 1 2 3 31 31 H 1.08996 * 109.47220 * 299.99691 * 1 2 3 32 32 H 1.08996 * 109.47208 * 119.99786 * 2 1 3 33 33 H 1.08996 * 109.47220 * 240.00308 * 2 1 3 34 34 H 1.08996 * 109.47048 * 299.99884 * 3 2 1 35 35 H 1.08996 * 109.46964 * 60.00152 * 3 2 1 36 36 H 1.09004 * 109.46761 * 299.99863 * 5 4 3 37 37 H 1.09000 * 109.47309 * 60.00022 * 5 4 3 38 38 H 1.09001 * 109.58962 * 353.37180 * 9 8 6 39 39 H 1.09005 * 109.58688 * 113.65221 * 9 8 6 40 40 H 1.09000 * 109.49868 * 65.31639 * 10 9 8 41 41 H 1.09009 * 109.50121 * 185.41183 * 10 9 8 42 42 H 1.09006 * 109.45923 * 181.38825 * 11 10 9 43 43 H 1.09000 * 109.45514 * 301.35188 * 11 10 9 44 44 H 1.09000 * 110.71994 * 336.75318 * 16 14 12 45 45 H 1.08999 * 110.72110 * 100.02679 * 16 14 12 46 46 H 1.09008 * 110.99917 * 153.57240 * 17 16 14 47 47 H 1.08990 * 111.00705 * 277.42444 * 17 16 14 48 48 H 1.09001 * 110.36918 * 81.83026 * 18 17 16 49 49 H 1.09004 * 110.36683 * 204.15192 * 18 17 16 50 50 H 0.97002 * 119.99967 * 179.97438 * 23 22 20 51 51 H 1.08997 * 109.59077 * 246.20276 * 28 8 6 52 52 H 1.09004 * 109.58281 * 6.63142 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 16 3.8539 1.4426 -0.0008 5 6 4.2620 3.2101 0.0001 6 6 5.7593 3.3800 -0.0010 7 8 6.4803 2.4047 -0.0019 8 7 6.2974 4.6156 -0.0012 9 6 5.4371 5.8067 -0.0007 10 6 5.8458 6.7106 -1.1680 11 6 7.3424 7.0162 -1.0716 12 6 8.1382 5.7126 -1.1685 13 1 7.9091 5.2158 -2.1113 14 6 9.6351 6.0223 -1.1050 15 1 10.2088 5.1017 -1.2120 16 6 9.9745 6.6989 0.2398 17 6 11.0319 7.7607 -0.1625 18 6 10.5165 8.2006 -1.5555 19 7 9.9960 6.9669 -2.1722 20 6 9.8701 6.7384 -3.5165 21 1 9.7055 5.7350 -3.8806 22 6 9.9540 7.7964 -4.4112 23 7 10.1550 9.0191 -3.9675 24 14 9.7829 7.4846 -6.2451 25 1 8.3539 7.5934 -6.6344 26 1 10.5780 8.4902 -6.9945 27 1 10.2805 6.1223 -6.5642 28 6 7.7553 4.7974 0.0040 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.8426 3.6802 -0.8895 37 1 3.8434 3.6792 0.8905 38 1 4.3961 5.5057 -0.1189 39 1 5.5575 6.3441 0.9400 40 1 5.6379 6.2041 -2.1105 41 1 5.2807 7.6416 -1.1224 42 1 7.6308 7.6793 -1.8872 43 1 7.5534 7.5003 -0.1181 44 1 9.0916 7.1758 0.6652 45 1 10.3988 5.9775 0.9382 46 1 11.0311 8.5972 0.5365 47 1 12.0242 7.3157 -0.2357 48 1 9.7200 8.9372 -1.4500 49 1 11.3337 8.6071 -2.1514 50 1 10.2140 9.7583 -4.5928 51 1 8.0632 5.2554 0.9439 52 1 8.2445 3.8301 -0.1111 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120329805.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:19 Heat of formation + Delta-G solvation = -24.955794 kcal Electronic energy + Delta-G solvation = -28418.716603 eV Core-core repulsion = 24737.425051 eV Total energy + Delta-G solvation = -3681.291552 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.19692 -38.32986 -36.41364 -35.02507 -33.02980 -32.33357 -31.41998 -30.04168 -29.26026 -27.63297 -26.60759 -24.94648 -24.52349 -22.59923 -22.07066 -21.31380 -20.22625 -19.12648 -18.33884 -17.29881 -16.64272 -16.60457 -15.94666 -15.49052 -15.45750 -15.08765 -14.57894 -14.26796 -14.13012 -13.91626 -13.89533 -13.77899 -13.60254 -13.17851 -12.96798 -12.81833 -12.41397 -12.17214 -12.09628 -11.89544 -11.78595 -11.58726 -11.46404 -11.20994 -11.13430 -10.89592 -10.84593 -10.72824 -10.42316 -10.25236 -10.10013 -10.08209 -9.95107 -9.87650 -9.65292 -9.61632 -9.43963 -8.56910 -8.49138 -7.82521 -6.75414 -5.74046 -3.08388 1.23866 2.33042 2.57113 3.04675 3.38646 3.45265 3.46496 4.32796 4.44994 4.49312 4.49678 4.74089 4.81681 4.88301 4.96890 5.02899 5.12288 5.20171 5.22427 5.24584 5.31215 5.40716 5.45584 5.55821 5.60617 5.68927 5.73009 5.73980 5.78265 5.81472 5.83788 5.91981 5.97748 6.07692 6.18656 6.28157 6.36596 6.45976 6.55598 6.61893 6.68315 6.78286 7.00901 7.04225 7.17238 7.40319 7.56432 7.64497 7.82136 8.13552 8.30068 9.22055 9.82974 10.52251 11.37952 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015110 B = 0.002574 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.599715 B =10875.129496 C =11837.823153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.107 4.107 4 S -0.187 6.187 5 C -0.125 4.125 6 C 0.529 3.471 7 O -0.524 6.524 8 N -0.602 5.602 9 C 0.107 3.893 10 C -0.135 4.135 11 C -0.105 4.105 12 C -0.103 4.103 13 H 0.070 0.930 14 C 0.167 3.833 15 H 0.033 0.967 16 C -0.130 4.130 17 C -0.150 4.150 18 C 0.175 3.825 19 N -0.590 5.590 20 C -0.222 4.222 21 H 0.072 0.928 22 C -0.004 4.004 23 N -0.917 5.917 24 Si 0.905 3.095 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.116 3.884 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.091 0.909 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.056 0.944 46 H 0.055 0.945 47 H 0.056 0.944 48 H 0.024 0.976 49 H 0.068 0.932 50 H 0.252 0.748 51 H 0.067 0.933 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.520 -8.270 11.784 21.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.255 4.255 4 S 0.039 5.961 5 C -0.276 4.276 6 C 0.315 3.685 7 O -0.400 6.400 8 N -0.336 5.336 9 C -0.016 4.016 10 C -0.173 4.173 11 C -0.142 4.142 12 C -0.125 4.125 13 H 0.088 0.912 14 C 0.059 3.941 15 H 0.051 0.949 16 C -0.167 4.167 17 C -0.189 4.189 18 C 0.050 3.950 19 N -0.314 5.314 20 C -0.351 4.351 21 H 0.090 0.910 22 C -0.201 4.201 23 N -0.564 5.564 24 Si 0.736 3.264 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 C -0.006 4.006 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.109 0.891 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.042 0.958 49 H 0.086 0.914 50 H 0.062 0.938 51 H 0.085 0.915 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.389 -9.503 11.568 21.470 hybrid contribution -1.131 1.235 -1.081 1.994 sum -16.521 -8.268 10.487 21.243 Atomic orbital electron populations 1.21764 0.94717 1.02132 1.02016 1.21223 0.95945 0.93921 1.03518 1.23572 0.95477 1.01692 1.04801 1.87555 1.04174 1.06300 1.98035 1.23538 0.98320 0.98983 1.06720 1.19580 0.88635 0.83334 0.76983 1.90737 1.61867 1.38051 1.49363 1.48086 1.08008 1.04916 1.72594 1.21815 0.93542 0.86489 0.99758 1.21948 0.98773 0.98843 0.97722 1.21481 0.91767 0.98073 1.02928 1.22028 0.98247 0.95136 0.97072 0.91152 1.20880 0.91120 0.93466 0.88640 0.94893 1.22683 0.98979 0.98269 0.96805 1.23013 0.98006 0.97755 1.00099 1.21398 0.97251 0.88278 0.88072 1.44460 1.72679 1.13634 1.00591 1.18939 1.42756 0.92914 0.80468 0.90994 1.24847 1.02072 0.95238 0.97920 1.69935 1.55465 0.98337 1.32708 0.86218 0.77555 0.77193 0.85428 1.21667 1.21766 1.20688 1.21941 0.78040 1.01379 0.99226 0.92117 0.92504 0.92565 0.90950 0.90891 0.90155 0.90224 0.87334 0.87495 0.90696 0.91250 0.91705 0.91176 0.89093 0.92744 0.91570 0.92576 0.92617 0.92496 0.95769 0.91376 0.93809 0.91474 0.89419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.43 16 2 C -0.11 -0.76 5.94 -26.73 -0.16 -0.92 16 3 C -0.11 -0.83 5.94 37.16 0.22 -0.61 16 4 S -0.19 -2.22 20.87 -107.50 -2.24 -4.47 16 5 C -0.12 -1.33 4.77 36.01 0.17 -1.16 16 6 C 0.53 7.74 7.72 -10.99 -0.08 7.65 16 7 O -0.52 -9.75 15.28 5.55 0.08 -9.67 16 8 N -0.60 -8.26 2.97 -172.53 -0.51 -8.78 16 9 C 0.11 1.16 6.34 -3.71 -0.02 1.14 16 10 C -0.13 -1.77 6.08 -26.61 -0.16 -1.94 16 11 C -0.11 -1.75 4.74 -26.69 -0.13 -1.88 16 12 C -0.10 -1.82 2.11 -90.30 -0.19 -2.01 16 13 H 0.07 1.44 8.08 -51.93 -0.42 1.02 16 14 C 0.17 3.29 2.97 -66.95 -0.20 3.09 16 15 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 16 C -0.13 -2.16 5.09 -24.90 -0.13 -2.29 16 17 C -0.15 -2.75 7.08 -24.58 -0.17 -2.92 16 18 C 0.17 4.04 5.41 -2.53 -0.01 4.03 16 19 N -0.59 -14.11 2.22 -162.58 -0.36 -14.47 16 20 C -0.22 -5.94 9.87 -15.06 -0.15 -6.09 16 21 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 22 C 0.00 -0.11 5.47 -17.43 -0.10 -0.21 16 23 N -0.92 -26.00 10.57 55.49 0.59 -25.41 16 24 Si 0.91 21.86 29.55 -169.99 -5.02 16.83 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 28 C 0.12 1.78 5.56 -3.51 -0.02 1.76 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.11 0.99 7.69 -51.92 -0.40 0.59 16 37 H 0.11 0.88 7.95 -51.92 -0.41 0.46 16 38 H 0.07 0.61 5.93 -51.93 -0.31 0.31 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 42 H 0.09 1.94 7.49 -51.93 -0.39 1.55 16 43 H 0.05 0.86 6.19 -51.93 -0.32 0.53 16 44 H 0.07 1.03 5.52 -51.93 -0.29 0.75 16 45 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 47 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 48 H 0.02 0.60 8.06 -51.93 -0.42 0.18 16 49 H 0.07 1.79 6.93 -51.93 -0.36 1.43 16 50 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 51 H 0.07 0.94 6.84 -51.93 -0.36 0.59 16 52 H 0.09 1.49 7.00 -51.93 -0.36 1.13 16 LS Contribution 405.61 15.07 6.11 6.11 Total: -1.00 -30.90 405.61 -11.62 -42.52 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -9.50 Total: 0.10 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -0.76 Total: -2.77 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: -0.29 Total: -48.66 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.08 Total: -9.67 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: -2.22 SS G_CDS: -2.24 Total: -4.47 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.90 -11.62 -42.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120329805.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.564 kcal (2) G-P(sol) polarization free energy of solvation -30.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds