Wall clock time and date at job start Sat Apr 11 2020 06:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46835 * 2 1 4 4 S 1.81404 * 109.46923 * 180.02562 * 3 2 1 5 5 C 1.81399 * 102.99922 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47177 * 180.02562 * 5 4 3 7 7 O 1.21285 * 120.00123 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00436 * 179.97438 * 6 5 4 9 9 C 1.46928 * 120.62797 * 359.97438 * 8 6 5 10 10 C 1.53183 * 108.77660 * 233.58657 * 9 8 6 11 11 C 1.53045 * 109.31329 * 305.36540 * 10 9 8 12 12 C 1.53034 * 109.53875 * 61.36405 * 11 10 9 13 13 H 1.09002 * 109.49509 * 58.62083 * 12 11 10 14 14 C 1.52999 * 109.49893 * 178.68405 * 12 11 10 15 15 H 1.08998 * 109.87294 * 182.16244 * 14 12 11 16 16 C 1.54324 * 109.88134 * 61.14613 * 14 12 11 17 17 C 1.55157 * 102.94123 * 218.38812 * 16 14 12 18 18 C 1.54907 * 101.58060 * 35.50477 * 17 16 14 19 19 N 1.47020 * 109.88168 * 303.33885 * 14 12 11 20 20 C 1.36933 * 125.64898 * 298.33547 * 19 14 12 21 21 H 1.07999 * 120.00116 * 345.39498 * 20 19 14 22 22 C 1.38813 * 120.00227 * 165.39702 * 20 19 14 23 23 N 1.31618 * 119.99703 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00292 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46702 * 90.00258 * 24 22 20 26 26 H 1.48495 * 109.47265 * 210.00262 * 24 22 20 27 27 H 1.48503 * 109.47179 * 330.00386 * 24 22 20 28 28 C 1.46921 * 120.63636 * 179.71570 * 8 6 5 29 29 H 1.08999 * 109.47253 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47208 * 60.00214 * 1 2 3 31 31 H 1.08996 * 109.47220 * 299.99691 * 1 2 3 32 32 H 1.08996 * 109.47208 * 119.99786 * 2 1 3 33 33 H 1.08996 * 109.47220 * 240.00308 * 2 1 3 34 34 H 1.08996 * 109.47048 * 299.99884 * 3 2 1 35 35 H 1.08996 * 109.46964 * 60.00152 * 3 2 1 36 36 H 1.09004 * 109.46761 * 299.99863 * 5 4 3 37 37 H 1.09000 * 109.47309 * 60.00022 * 5 4 3 38 38 H 1.09001 * 109.58962 * 353.37180 * 9 8 6 39 39 H 1.09005 * 109.58688 * 113.65221 * 9 8 6 40 40 H 1.09000 * 109.49868 * 65.31639 * 10 9 8 41 41 H 1.09009 * 109.50121 * 185.41183 * 10 9 8 42 42 H 1.09006 * 109.45923 * 181.38825 * 11 10 9 43 43 H 1.09000 * 109.45514 * 301.35188 * 11 10 9 44 44 H 1.09000 * 110.71994 * 336.75318 * 16 14 12 45 45 H 1.08999 * 110.72110 * 100.02679 * 16 14 12 46 46 H 1.09008 * 110.99917 * 153.57240 * 17 16 14 47 47 H 1.08990 * 111.00705 * 277.42444 * 17 16 14 48 48 H 1.09001 * 110.36918 * 81.83026 * 18 17 16 49 49 H 1.09004 * 110.36683 * 204.15192 * 18 17 16 50 50 H 0.97002 * 119.99967 * 179.97438 * 23 22 20 51 51 H 1.08997 * 109.59077 * 246.20276 * 28 8 6 52 52 H 1.09004 * 109.58281 * 6.63142 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 16 3.8539 1.4426 -0.0008 5 6 4.2620 3.2101 0.0001 6 6 5.7593 3.3800 -0.0010 7 8 6.4803 2.4047 -0.0019 8 7 6.2974 4.6156 -0.0012 9 6 5.4371 5.8067 -0.0007 10 6 5.8458 6.7106 -1.1680 11 6 7.3424 7.0162 -1.0716 12 6 8.1382 5.7126 -1.1685 13 1 7.9091 5.2158 -2.1113 14 6 9.6351 6.0223 -1.1050 15 1 10.2088 5.1017 -1.2120 16 6 9.9745 6.6989 0.2398 17 6 11.0319 7.7607 -0.1625 18 6 10.5165 8.2006 -1.5555 19 7 9.9960 6.9669 -2.1722 20 6 9.8701 6.7384 -3.5165 21 1 9.7055 5.7350 -3.8806 22 6 9.9540 7.7964 -4.4112 23 7 10.1550 9.0191 -3.9675 24 14 9.7829 7.4846 -6.2451 25 1 8.3539 7.5934 -6.6344 26 1 10.5780 8.4902 -6.9945 27 1 10.2805 6.1223 -6.5642 28 6 7.7553 4.7974 0.0040 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.8426 3.6802 -0.8895 37 1 3.8434 3.6792 0.8905 38 1 4.3961 5.5057 -0.1189 39 1 5.5575 6.3441 0.9400 40 1 5.6379 6.2041 -2.1105 41 1 5.2807 7.6416 -1.1224 42 1 7.6308 7.6793 -1.8872 43 1 7.5534 7.5003 -0.1181 44 1 9.0916 7.1758 0.6652 45 1 10.3988 5.9775 0.9382 46 1 11.0311 8.5972 0.5365 47 1 12.0242 7.3157 -0.2357 48 1 9.7200 8.9372 -1.4500 49 1 11.3337 8.6071 -2.1514 50 1 10.2140 9.7583 -4.5928 51 1 8.0632 5.2554 0.9439 52 1 8.2445 3.8301 -0.1111 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120329805.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:18 Heat of formation + Delta-G solvation = -40.837286 kcal Electronic energy + Delta-G solvation = -28419.405276 eV Core-core repulsion = 24737.425051 eV Total energy + Delta-G solvation = -3681.980225 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.39230 -39.80483 -37.76620 -35.55243 -34.74352 -33.86259 -32.61781 -31.33382 -30.88366 -28.22400 -28.00084 -26.47176 -26.09914 -23.91409 -22.79214 -22.47360 -21.91100 -20.47638 -19.68022 -18.65687 -18.23061 -17.58523 -16.94171 -16.81263 -16.44629 -16.31804 -16.15363 -15.70798 -15.58324 -15.14715 -14.83057 -14.64064 -14.43502 -14.28926 -14.18405 -13.84056 -13.70323 -13.62408 -13.31174 -13.24057 -13.16131 -12.88017 -12.77201 -12.46425 -12.37411 -12.08794 -12.03299 -11.94663 -11.82934 -11.74915 -11.71515 -11.57811 -11.47091 -11.26341 -10.97339 -10.93530 -10.80606 -10.63447 -9.65997 -8.74282 -8.70237 -7.84910 -5.18945 0.45141 1.41928 1.42596 1.48983 1.51123 1.60785 2.00198 2.48481 3.33345 3.38414 3.65613 3.81091 3.90812 3.93886 3.97039 4.01237 4.09553 4.11189 4.20154 4.27575 4.30525 4.35230 4.40214 4.43960 4.54089 4.57282 4.58680 4.68635 4.76447 4.81838 4.84359 4.85737 4.86826 4.93121 5.08996 5.16298 5.19880 5.20425 5.22806 5.31801 5.39053 5.44494 5.49666 5.53450 5.60037 5.69239 5.72741 5.83841 6.27818 6.33781 7.04924 7.14821 7.83089 8.50263 9.25692 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015110 B = 0.002574 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.599715 B =10875.129496 C =11837.823153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 C -0.085 4.085 4 S -0.267 6.267 5 C -0.106 4.106 6 C 0.521 3.479 7 O -0.573 6.573 8 N -0.603 5.603 9 C 0.109 3.891 10 C -0.130 4.130 11 C -0.097 4.097 12 C -0.090 4.090 13 H 0.029 0.971 14 C 0.157 3.843 15 H 0.017 0.983 16 C -0.115 4.115 17 C -0.138 4.138 18 C 0.181 3.819 19 N -0.606 5.606 20 C -0.226 4.226 21 H 0.062 0.938 22 C -0.055 4.055 23 N -0.941 5.941 24 Si 0.962 3.038 25 H -0.287 1.287 26 H -0.293 1.293 27 H -0.278 1.278 28 C 0.127 3.873 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.129 0.871 37 H 0.142 0.858 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.045 0.955 41 H 0.093 0.907 42 H 0.037 0.963 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.057 0.943 48 H 0.002 0.998 49 H 0.027 0.973 50 H 0.246 0.754 51 H 0.092 0.908 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.293 -8.107 14.158 25.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.147 4.147 3 C -0.233 4.233 4 S -0.040 6.040 5 C -0.257 4.257 6 C 0.309 3.691 7 O -0.453 6.453 8 N -0.335 5.335 9 C -0.013 4.013 10 C -0.168 4.168 11 C -0.134 4.134 12 C -0.112 4.112 13 H 0.047 0.953 14 C 0.050 3.950 15 H 0.035 0.965 16 C -0.152 4.152 17 C -0.176 4.176 18 C 0.056 3.944 19 N -0.330 5.330 20 C -0.356 4.356 21 H 0.080 0.920 22 C -0.249 4.249 23 N -0.590 5.590 24 Si 0.791 3.209 25 H -0.214 1.214 26 H -0.219 1.219 27 H -0.203 1.203 28 C 0.004 3.996 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.147 0.853 37 H 0.160 0.840 38 H 0.130 0.870 39 H 0.115 0.885 40 H 0.064 0.936 41 H 0.111 0.889 42 H 0.056 0.944 43 H 0.090 0.910 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.103 0.897 47 H 0.076 0.924 48 H 0.020 0.980 49 H 0.046 0.954 50 H 0.055 0.945 51 H 0.110 0.890 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.186 -9.342 13.962 24.758 hybrid contribution -0.257 1.136 -1.843 2.180 sum -18.443 -8.206 12.119 23.545 Atomic orbital electron populations 1.21732 0.93052 1.02711 1.02651 1.21247 0.97175 0.93555 1.02751 1.23591 0.91250 1.02271 1.06189 1.87899 1.09082 1.08779 1.98282 1.23468 0.95110 0.97824 1.09278 1.20283 0.90305 0.82722 0.75799 1.90720 1.63413 1.39672 1.51459 1.48172 1.07487 1.05896 1.71987 1.22055 0.94742 0.84881 0.99577 1.21901 0.96193 1.00473 0.98251 1.21329 0.94323 0.96212 1.01560 1.21770 0.96982 0.96038 0.96406 0.95264 1.21088 0.92323 0.92306 0.89327 0.96517 1.22656 0.99282 0.98073 0.95235 1.22896 0.98258 0.99180 0.97285 1.21180 0.95181 0.87697 0.90357 1.44631 1.73104 1.14613 1.00610 1.19090 1.41683 0.92451 0.82378 0.92026 1.25489 1.02767 0.95212 1.01427 1.70115 1.56780 0.98736 1.33349 0.85325 0.77349 0.76933 0.81247 1.21369 1.21909 1.20304 1.21665 0.79620 0.99568 0.98723 0.91670 0.92045 0.91688 0.91553 0.92001 0.89021 0.88373 0.85283 0.83974 0.87002 0.88523 0.93604 0.88886 0.94397 0.91020 0.89681 0.89552 0.89698 0.92399 0.97981 0.95439 0.94462 0.89019 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.91 71.98 0.71 -0.47 16 2 C -0.11 -1.36 5.94 30.59 0.18 -1.18 16 3 C -0.08 -1.10 5.94 71.98 0.43 -0.67 16 4 S -0.27 -6.03 20.87 -56.49 -1.18 -7.20 16 5 C -0.11 -1.94 4.77 71.24 0.34 -1.60 16 6 C 0.52 14.38 7.72 87.66 0.68 15.06 16 7 O -0.57 -21.47 15.28 -3.05 -0.05 -21.52 16 8 N -0.60 -15.11 2.97 -818.15 -2.43 -17.53 16 9 C 0.11 1.89 6.34 86.36 0.55 2.43 16 10 C -0.13 -3.14 6.08 30.67 0.19 -2.95 16 11 C -0.10 -3.17 4.74 30.62 0.15 -3.03 16 12 C -0.09 -3.23 2.11 -10.59 -0.02 -3.25 16 13 H 0.03 1.26 8.08 -2.39 -0.02 1.24 16 14 C 0.16 6.24 2.97 45.34 0.13 6.38 16 15 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 16 C -0.11 -3.57 5.09 31.78 0.16 -3.41 16 17 C -0.14 -4.85 7.08 31.99 0.23 -4.62 16 18 C 0.18 8.62 5.41 86.85 0.47 9.09 16 19 N -0.61 -30.14 2.22 -668.27 -1.49 -31.63 16 20 C -0.23 -12.69 9.87 84.03 0.83 -11.86 16 21 H 0.06 3.49 7.83 -2.91 -0.02 3.47 16 22 C -0.06 -3.14 5.47 84.86 0.46 -2.67 16 23 N -0.94 -55.71 10.57 21.65 0.23 -55.48 16 24 Si 0.96 46.52 29.55 68.60 2.03 48.54 16 25 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 26 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 27 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 28 C 0.13 3.75 5.56 86.50 0.48 4.23 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.13 1.84 7.69 -2.39 -0.02 1.82 16 37 H 0.14 1.60 7.95 -2.39 -0.02 1.58 16 38 H 0.11 1.18 5.93 -2.39 -0.01 1.17 16 39 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 42 H 0.04 1.66 7.49 -2.38 -0.02 1.64 16 43 H 0.07 2.08 6.19 -2.39 -0.01 2.06 16 44 H 0.08 2.34 5.52 -2.39 -0.01 2.33 16 45 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 46 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 47 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 48 H 0.00 0.11 8.06 -2.39 -0.02 0.09 16 49 H 0.03 1.51 6.93 -2.39 -0.02 1.49 16 50 H 0.25 14.25 8.31 -92.71 -0.77 13.47 16 51 H 0.09 2.27 6.84 -2.39 -0.02 2.26 16 52 H 0.06 2.24 7.00 -2.38 -0.02 2.23 16 Total: -1.00 -74.37 405.61 3.95 -70.41 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 0.87 Total: 12.93 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 5.96 Total: 1.47 kcal Atomic # 7 Polarization: -100.95 SS G_CDS: -3.68 Total: -104.64 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.05 Total: -21.52 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.54 kcal Atomic # 16 Polarization: -6.03 SS G_CDS: -1.18 Total: -7.20 kcal Total: -74.37 3.95 -70.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120329805.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.578 kcal (2) G-P(sol) polarization free energy of solvation -74.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds