Wall clock time and date at job start Sat Apr 11 2020 06:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47168 * 2 1 4 4 S 1.81406 * 109.47299 * 179.97438 * 3 2 1 5 5 C 1.81393 * 103.00342 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.47629 * 179.97438 * 5 4 3 7 7 O 1.21288 * 119.99783 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00680 * 179.97438 * 6 5 4 9 9 C 1.46926 * 120.62661 * 0.02562 * 8 6 5 10 10 C 1.53197 * 108.77546 * 126.41173 * 9 8 6 11 11 C 1.53036 * 109.31214 * 54.63437 * 10 9 8 12 12 C 1.53041 * 109.53865 * 298.63391 * 11 10 9 13 13 H 1.09003 * 109.49993 * 301.38598 * 12 11 10 14 14 C 1.52995 * 109.50109 * 181.31832 * 12 11 10 15 15 H 1.09005 * 109.99847 * 306.87207 * 14 12 11 16 16 C 1.54321 * 109.88878 * 185.77312 * 14 12 11 17 17 C 1.55152 * 102.94508 * 218.38895 * 16 14 12 18 18 C 1.54911 * 101.58297 * 35.50294 * 17 16 14 19 19 N 1.47023 * 109.88148 * 67.96181 * 14 12 11 20 20 C 1.36938 * 125.65348 * 298.31508 * 19 14 12 21 21 H 1.08001 * 119.99827 * 137.06928 * 20 19 14 22 22 C 1.38809 * 119.99759 * 317.07513 * 20 19 14 23 23 N 1.31624 * 119.99649 * 168.95557 * 22 20 19 24 24 Si 1.86793 * 120.00206 * 348.95373 * 22 20 19 25 25 H 1.48506 * 109.47207 * 85.58132 * 24 22 20 26 26 H 1.48503 * 109.47347 * 205.58128 * 24 22 20 27 27 H 1.48498 * 109.47315 * 325.58008 * 24 22 20 28 28 C 1.46923 * 120.63677 * 180.02562 * 8 6 5 29 29 H 1.09000 * 109.46793 * 60.00283 * 1 2 3 30 30 H 1.08999 * 109.47004 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47504 * 300.00521 * 1 2 3 32 32 H 1.08999 * 109.47504 * 239.99479 * 2 1 3 33 33 H 1.09008 * 109.47010 * 119.99983 * 2 1 3 34 34 H 1.09004 * 109.47261 * 60.00096 * 3 2 1 35 35 H 1.09000 * 109.47032 * 299.99570 * 3 2 1 36 36 H 1.09006 * 109.47138 * 60.00167 * 5 4 3 37 37 H 1.09003 * 109.47077 * 300.00128 * 5 4 3 38 38 H 1.08998 * 109.59040 * 6.62666 * 9 8 6 39 39 H 1.09003 * 109.70622 * 246.26962 * 9 8 6 40 40 H 1.08999 * 109.49369 * 294.67806 * 10 9 8 41 41 H 1.08998 * 109.52482 * 174.60652 * 10 9 8 42 42 H 1.09003 * 109.45956 * 178.61851 * 11 10 9 43 43 H 1.08997 * 109.45195 * 58.65225 * 11 10 9 44 44 H 1.09000 * 110.71316 * 336.75414 * 16 14 12 45 45 H 1.09004 * 110.71596 * 100.02253 * 16 14 12 46 46 H 1.09005 * 111.00258 * 153.57387 * 17 16 14 47 47 H 1.09001 * 111.00503 * 277.42723 * 17 16 14 48 48 H 1.08999 * 110.37226 * 81.82403 * 18 17 16 49 49 H 1.08996 * 110.37010 * 204.04273 * 18 17 16 50 50 H 0.96999 * 119.99527 * 179.97438 * 23 22 20 51 51 H 1.08992 * 109.58611 * 113.80056 * 28 8 6 52 52 H 1.09002 * 109.58072 * 353.37994 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4425 0.0008 5 6 4.2621 3.2099 -0.0001 6 6 5.7595 3.3798 0.0010 7 8 6.4805 2.4045 0.0019 8 7 6.2976 4.6155 0.0001 9 6 5.4373 5.8065 -0.0014 10 6 5.8459 6.7115 1.1652 11 6 7.3424 7.0169 1.0687 12 6 8.1382 5.7134 1.1668 13 1 7.9090 5.2173 2.1100 14 6 9.6352 6.0229 1.1033 15 1 9.8544 6.6243 0.2211 16 6 10.4415 4.7080 1.0556 17 6 11.6739 5.0236 1.9438 18 6 11.0487 5.9320 3.0318 19 7 10.0484 6.7446 2.3157 20 6 9.5823 7.9692 2.7135 21 1 9.3362 8.1425 3.7507 22 6 9.4260 8.9878 1.7835 23 7 8.7800 10.0863 2.1130 24 14 10.1323 8.7997 0.0645 25 1 9.1598 8.0767 -0.7939 26 1 10.3981 10.1425 -0.5112 27 1 11.4006 8.0302 0.1320 28 6 7.7555 4.7972 0.0007 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.8429 3.6801 0.8895 37 1 3.8436 3.6790 -0.8906 38 1 4.3964 5.5057 0.1168 39 1 5.5573 6.3454 -0.9413 40 1 5.6378 6.2058 2.1080 41 1 5.2809 7.6424 1.1193 42 1 7.6308 7.6807 1.8838 43 1 7.5534 7.5003 0.1148 44 1 9.8632 3.8855 1.4766 45 1 10.7497 4.4814 0.0349 46 1 12.0827 4.1133 2.3826 47 1 12.4362 5.5593 1.3782 48 1 10.5666 5.3274 3.7999 49 1 11.8113 6.5714 3.4764 50 1 8.6711 10.7983 1.4633 51 1 8.0673 5.2527 -0.9391 52 1 8.2441 3.8302 0.1202 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120329806.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:22 Heat of formation + Delta-G solvation = -19.584009 kcal Electronic energy + Delta-G solvation = -28873.862466 eV Core-core repulsion = 25192.803852 eV Total energy + Delta-G solvation = -3681.058614 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.15156 -38.40500 -36.53413 -35.01306 -33.07831 -32.65224 -31.32615 -30.07245 -29.92131 -27.62865 -26.87137 -24.90077 -24.40530 -22.67816 -22.05570 -20.66429 -20.17294 -19.71812 -18.85014 -17.26345 -16.76540 -16.62185 -15.99907 -15.69831 -15.41072 -15.20674 -14.91910 -14.15680 -13.98122 -13.88291 -13.74118 -13.61244 -13.41557 -13.20931 -13.12499 -12.88688 -12.67293 -12.38492 -12.20662 -12.00037 -11.83385 -11.72242 -11.53560 -11.23100 -11.19804 -11.16191 -10.84110 -10.73346 -10.53101 -10.34758 -10.29807 -10.14900 -10.06944 -9.91697 -9.66703 -9.54611 -9.30299 -8.60121 -8.23888 -7.80831 -6.71203 -6.07105 -3.55281 1.25942 2.34947 2.60302 3.09481 3.24782 3.40320 3.46241 4.37129 4.44401 4.46748 4.50990 4.77858 4.88758 4.90511 4.95975 5.03199 5.04287 5.16592 5.24050 5.28041 5.32333 5.34441 5.40426 5.52114 5.60717 5.61493 5.62194 5.69917 5.72194 5.81485 5.84767 5.92217 6.01700 6.10673 6.16421 6.25195 6.32520 6.36375 6.40854 6.46848 6.63898 6.69354 6.81941 6.89106 6.90033 7.14581 7.46496 7.56025 7.98817 8.16843 8.30374 8.82398 9.58274 10.25035 11.07129 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018684 B = 0.002795 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.219506 B =10014.001217 C =10798.918632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.107 4.107 4 S -0.188 6.188 5 C -0.124 4.124 6 C 0.529 3.471 7 O -0.527 6.527 8 N -0.600 5.600 9 C 0.104 3.896 10 C -0.131 4.131 11 C -0.139 4.139 12 C -0.094 4.094 13 H 0.070 0.930 14 C 0.152 3.848 15 H 0.035 0.965 16 C -0.131 4.131 17 C -0.137 4.137 18 C 0.129 3.871 19 N -0.602 5.602 20 C -0.246 4.246 21 H 0.080 0.920 22 C 0.047 3.953 23 N -0.904 5.904 24 Si 0.886 3.114 25 H -0.276 1.276 26 H -0.305 1.305 27 H -0.273 1.273 28 C 0.113 3.887 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.132 0.868 43 H 0.051 0.949 44 H 0.069 0.931 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.025 0.975 49 H 0.048 0.952 50 H 0.265 0.735 51 H 0.061 0.939 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.883 -13.518 -5.544 19.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.255 4.255 4 S 0.039 5.961 5 C -0.275 4.275 6 C 0.315 3.685 7 O -0.404 6.404 8 N -0.333 5.333 9 C -0.019 4.019 10 C -0.169 4.169 11 C -0.176 4.176 12 C -0.115 4.115 13 H 0.088 0.912 14 C 0.046 3.954 15 H 0.052 0.948 16 C -0.169 4.169 17 C -0.175 4.175 18 C 0.004 3.996 19 N -0.328 5.328 20 C -0.374 4.374 21 H 0.098 0.902 22 C -0.155 4.155 23 N -0.545 5.545 24 Si 0.717 3.283 25 H -0.203 1.203 26 H -0.234 1.234 27 H -0.198 1.198 28 C -0.009 4.009 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.150 0.850 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.043 0.957 49 H 0.066 0.934 50 H 0.075 0.925 51 H 0.079 0.921 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.869 -14.611 -5.549 19.625 hybrid contribution -0.644 1.380 -1.143 1.904 sum -12.513 -13.231 -6.692 19.401 Atomic orbital electron populations 1.21765 0.94719 1.02115 1.02036 1.21222 0.95943 0.93927 1.03489 1.23572 0.95468 1.01671 1.04832 1.87508 1.04189 1.06395 1.98045 1.23536 0.98307 0.98877 1.06797 1.19568 0.88645 0.83275 0.77006 1.90722 1.61888 1.38047 1.49694 1.48054 1.07920 1.05019 1.72324 1.21886 0.93332 0.86457 1.00226 1.21922 0.99269 0.98625 0.97050 1.22188 0.91521 0.98341 1.05560 1.21843 0.97080 0.95694 0.96867 0.91178 1.21204 0.91071 0.91333 0.91791 0.94795 1.22656 0.97055 0.97735 0.99443 1.22763 0.97128 0.99259 0.98357 1.21741 0.91391 0.92814 0.93615 1.44637 1.44727 1.18361 1.25097 1.18407 1.38744 0.84431 0.95808 0.90244 1.25532 0.97154 0.94448 0.98333 1.69775 1.42034 1.07243 1.35408 0.86963 0.80572 0.75357 0.85390 1.20330 1.23367 1.19816 1.21887 0.78294 1.01383 0.99329 0.92560 0.92125 0.92495 0.90969 0.90906 0.90136 0.90221 0.87280 0.87484 0.90739 0.91351 0.91989 0.91027 0.85033 0.93053 0.91236 0.92024 0.91894 0.91861 0.95735 0.93369 0.92513 0.92057 0.89108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.45 16 2 C -0.11 -0.77 5.94 -26.73 -0.16 -0.93 16 3 C -0.11 -0.86 5.94 37.16 0.22 -0.64 16 4 S -0.19 -2.28 20.87 -107.50 -2.24 -4.53 16 5 C -0.12 -1.40 4.77 36.00 0.17 -1.23 16 6 C 0.53 8.12 7.72 -10.99 -0.08 8.03 16 7 O -0.53 -9.95 15.28 5.55 0.08 -9.86 16 8 N -0.60 -9.09 2.97 -172.79 -0.51 -9.60 16 9 C 0.10 1.34 6.34 -3.71 -0.02 1.32 16 10 C -0.13 -2.03 6.08 -26.61 -0.16 -2.19 16 11 C -0.14 -2.76 3.72 -26.69 -0.10 -2.86 16 12 C -0.09 -1.79 1.97 -90.52 -0.18 -1.96 16 13 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 14 C 0.15 3.14 1.99 -66.96 -0.13 3.00 16 15 H 0.03 0.77 3.56 -51.93 -0.18 0.59 16 16 C -0.13 -2.28 5.41 -24.90 -0.13 -2.42 16 17 C -0.14 -2.33 7.08 -24.58 -0.17 -2.50 16 18 C 0.13 2.57 7.23 -2.52 -0.02 2.55 16 19 N -0.60 -13.85 2.58 -162.57 -0.42 -14.27 16 20 C -0.25 -6.47 8.40 -15.06 -0.13 -6.59 16 21 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 22 C 0.05 1.25 3.65 -17.43 -0.06 1.19 16 23 N -0.90 -25.59 13.97 55.49 0.78 -24.81 16 24 Si 0.89 21.69 23.33 -169.99 -3.97 17.73 16 25 H -0.28 -6.41 5.62 56.52 0.32 -6.09 16 26 H -0.31 -7.68 7.11 56.52 0.40 -7.28 16 27 H -0.27 -6.76 7.10 56.52 0.40 -6.35 16 28 C 0.11 1.93 5.25 -3.73 -0.02 1.91 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 34 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 35 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 36 H 0.11 1.06 7.69 -51.92 -0.40 0.66 16 37 H 0.11 0.97 7.94 -51.92 -0.41 0.56 16 38 H 0.07 0.72 5.93 -51.93 -0.31 0.42 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.13 3.14 4.35 -51.93 -0.23 2.91 16 43 H 0.05 1.08 5.90 -51.93 -0.31 0.77 16 44 H 0.07 1.17 7.23 -51.93 -0.38 0.79 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 47 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 49 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 50 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 51 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 52 H 0.09 1.59 5.79 -51.93 -0.30 1.29 16 LS Contribution 393.43 15.07 5.93 5.93 Total: -1.00 -30.20 393.43 -10.31 -40.51 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -9.34 Total: 2.68 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -0.62 Total: -3.78 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: -0.16 Total: -48.69 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.08 Total: -9.86 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -3.97 Total: 17.73 kcal Atomic # 16 Polarization: -2.28 SS G_CDS: -2.24 Total: -4.53 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.20 -10.31 -40.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120329806.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.928 kcal (2) G-P(sol) polarization free energy of solvation -30.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds