Wall clock time and date at job start Sat Apr 11 2020 06:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47168 * 2 1 4 4 S 1.81406 * 109.47299 * 179.97438 * 3 2 1 5 5 C 1.81393 * 103.00342 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.47629 * 179.97438 * 5 4 3 7 7 O 1.21288 * 119.99783 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00680 * 179.97438 * 6 5 4 9 9 C 1.46926 * 120.62661 * 0.02562 * 8 6 5 10 10 C 1.53197 * 108.77546 * 126.41173 * 9 8 6 11 11 C 1.53036 * 109.31214 * 54.63437 * 10 9 8 12 12 C 1.53041 * 109.53865 * 298.63391 * 11 10 9 13 13 H 1.09003 * 109.49993 * 301.38598 * 12 11 10 14 14 C 1.52995 * 109.50109 * 181.31832 * 12 11 10 15 15 H 1.09005 * 109.99847 * 306.87207 * 14 12 11 16 16 C 1.54321 * 109.88878 * 185.77312 * 14 12 11 17 17 C 1.55152 * 102.94508 * 218.38895 * 16 14 12 18 18 C 1.54911 * 101.58297 * 35.50294 * 17 16 14 19 19 N 1.47023 * 109.88148 * 67.96181 * 14 12 11 20 20 C 1.36938 * 125.65348 * 298.31508 * 19 14 12 21 21 H 1.08001 * 119.99827 * 137.06928 * 20 19 14 22 22 C 1.38809 * 119.99759 * 317.07513 * 20 19 14 23 23 N 1.31624 * 119.99649 * 168.95557 * 22 20 19 24 24 Si 1.86793 * 120.00206 * 348.95373 * 22 20 19 25 25 H 1.48506 * 109.47207 * 85.58132 * 24 22 20 26 26 H 1.48503 * 109.47347 * 205.58128 * 24 22 20 27 27 H 1.48498 * 109.47315 * 325.58008 * 24 22 20 28 28 C 1.46923 * 120.63677 * 180.02562 * 8 6 5 29 29 H 1.09000 * 109.46793 * 60.00283 * 1 2 3 30 30 H 1.08999 * 109.47004 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47504 * 300.00521 * 1 2 3 32 32 H 1.08999 * 109.47504 * 239.99479 * 2 1 3 33 33 H 1.09008 * 109.47010 * 119.99983 * 2 1 3 34 34 H 1.09004 * 109.47261 * 60.00096 * 3 2 1 35 35 H 1.09000 * 109.47032 * 299.99570 * 3 2 1 36 36 H 1.09006 * 109.47138 * 60.00167 * 5 4 3 37 37 H 1.09003 * 109.47077 * 300.00128 * 5 4 3 38 38 H 1.08998 * 109.59040 * 6.62666 * 9 8 6 39 39 H 1.09003 * 109.70622 * 246.26962 * 9 8 6 40 40 H 1.08999 * 109.49369 * 294.67806 * 10 9 8 41 41 H 1.08998 * 109.52482 * 174.60652 * 10 9 8 42 42 H 1.09003 * 109.45956 * 178.61851 * 11 10 9 43 43 H 1.08997 * 109.45195 * 58.65225 * 11 10 9 44 44 H 1.09000 * 110.71316 * 336.75414 * 16 14 12 45 45 H 1.09004 * 110.71596 * 100.02253 * 16 14 12 46 46 H 1.09005 * 111.00258 * 153.57387 * 17 16 14 47 47 H 1.09001 * 111.00503 * 277.42723 * 17 16 14 48 48 H 1.08999 * 110.37226 * 81.82403 * 18 17 16 49 49 H 1.08996 * 110.37010 * 204.04273 * 18 17 16 50 50 H 0.96999 * 119.99527 * 179.97438 * 23 22 20 51 51 H 1.08992 * 109.58611 * 113.80056 * 28 8 6 52 52 H 1.09002 * 109.58072 * 353.37994 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4425 0.0008 5 6 4.2621 3.2099 -0.0001 6 6 5.7595 3.3798 0.0010 7 8 6.4805 2.4045 0.0019 8 7 6.2976 4.6155 0.0001 9 6 5.4373 5.8065 -0.0014 10 6 5.8459 6.7115 1.1652 11 6 7.3424 7.0169 1.0687 12 6 8.1382 5.7134 1.1668 13 1 7.9090 5.2173 2.1100 14 6 9.6352 6.0229 1.1033 15 1 9.8544 6.6243 0.2211 16 6 10.4415 4.7080 1.0556 17 6 11.6739 5.0236 1.9438 18 6 11.0487 5.9320 3.0318 19 7 10.0484 6.7446 2.3157 20 6 9.5823 7.9692 2.7135 21 1 9.3362 8.1425 3.7507 22 6 9.4260 8.9878 1.7835 23 7 8.7800 10.0863 2.1130 24 14 10.1323 8.7997 0.0645 25 1 9.1598 8.0767 -0.7939 26 1 10.3981 10.1425 -0.5112 27 1 11.4006 8.0302 0.1320 28 6 7.7555 4.7972 0.0007 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.8429 3.6801 0.8895 37 1 3.8436 3.6790 -0.8906 38 1 4.3964 5.5057 0.1168 39 1 5.5573 6.3454 -0.9413 40 1 5.6378 6.2058 2.1080 41 1 5.2809 7.6424 1.1193 42 1 7.6308 7.6807 1.8838 43 1 7.5534 7.5003 0.1148 44 1 9.8632 3.8855 1.4766 45 1 10.7497 4.4814 0.0349 46 1 12.0827 4.1133 2.3826 47 1 12.4362 5.5593 1.3782 48 1 10.5666 5.3274 3.7999 49 1 11.8113 6.5714 3.4764 50 1 8.6711 10.7983 1.4633 51 1 8.0673 5.2527 -0.9391 52 1 8.2441 3.8302 0.1202 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120329806.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:21 Heat of formation + Delta-G solvation = -36.475809 kcal Electronic energy + Delta-G solvation = -28874.594949 eV Core-core repulsion = 25192.803852 eV Total energy + Delta-G solvation = -3681.791097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.43479 -39.90914 -37.89652 -35.54996 -34.85151 -34.18852 -32.68559 -31.74930 -31.08688 -28.39050 -28.08559 -26.41646 -26.02617 -24.05305 -22.68576 -22.07191 -21.69277 -21.36579 -20.09580 -18.73459 -18.29584 -17.65705 -17.38485 -16.81654 -16.54506 -16.42823 -16.15878 -15.43628 -15.32059 -15.23429 -15.02644 -14.68548 -14.61782 -14.47566 -14.32718 -14.15662 -13.74939 -13.66906 -13.60931 -13.29807 -13.24443 -12.93358 -12.87608 -12.44564 -12.36056 -12.22684 -12.13900 -12.04604 -11.96700 -11.84344 -11.81197 -11.71119 -11.51087 -11.20429 -10.97251 -10.92434 -10.81128 -10.40123 -9.68934 -8.70014 -8.61014 -8.17380 -5.62297 0.44028 1.27437 1.38015 1.46528 1.47239 1.59891 1.95735 2.40526 3.10643 3.32927 3.38163 3.74233 3.88165 3.91068 3.97113 3.98968 4.00649 4.08671 4.10427 4.16275 4.22255 4.23489 4.37752 4.40382 4.47635 4.52594 4.57308 4.59732 4.68923 4.69121 4.78970 4.84779 4.85986 4.88010 4.97099 4.98165 5.09750 5.13182 5.16410 5.20663 5.26209 5.32114 5.39299 5.41465 5.49118 5.57029 5.81768 6.02550 6.20585 6.30939 6.88615 7.01018 7.54913 8.27196 9.00908 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018684 B = 0.002795 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.219506 B =10014.001217 C =10798.918632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.108 4.108 3 C -0.087 4.087 4 S -0.259 6.259 5 C -0.109 4.109 6 C 0.525 3.475 7 O -0.567 6.567 8 N -0.602 5.602 9 C 0.108 3.892 10 C -0.126 4.126 11 C -0.137 4.137 12 C -0.083 4.083 13 H 0.052 0.948 14 C 0.143 3.857 15 H 0.019 0.981 16 C -0.124 4.124 17 C -0.125 4.125 18 C 0.121 3.879 19 N -0.619 5.619 20 C -0.234 4.234 21 H 0.039 0.961 22 C 0.014 3.986 23 N -0.942 5.942 24 Si 0.933 3.067 25 H -0.258 1.258 26 H -0.315 1.315 27 H -0.275 1.275 28 C 0.122 3.878 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.131 0.869 37 H 0.138 0.862 38 H 0.117 0.883 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.037 0.963 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.097 0.903 47 H 0.062 0.938 48 H 0.029 0.971 49 H 0.040 0.960 50 H 0.264 0.736 51 H 0.064 0.936 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.624 -15.234 -7.246 22.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.147 4.147 3 C -0.235 4.235 4 S -0.033 6.033 5 C -0.259 4.259 6 C 0.313 3.687 7 O -0.447 6.447 8 N -0.334 5.334 9 C -0.014 4.014 10 C -0.164 4.164 11 C -0.174 4.174 12 C -0.104 4.104 13 H 0.071 0.929 14 C 0.038 3.962 15 H 0.036 0.964 16 C -0.162 4.162 17 C -0.163 4.163 18 C -0.004 4.004 19 N -0.345 5.345 20 C -0.363 4.363 21 H 0.057 0.943 22 C -0.184 4.184 23 N -0.586 5.586 24 Si 0.764 3.236 25 H -0.184 1.184 26 H -0.244 1.244 27 H -0.200 1.200 28 C -0.001 4.001 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.149 0.851 37 H 0.156 0.844 38 H 0.135 0.865 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.056 0.944 44 H 0.095 0.905 45 H 0.101 0.899 46 H 0.115 0.885 47 H 0.081 0.919 48 H 0.047 0.953 49 H 0.059 0.941 50 H 0.073 0.927 51 H 0.083 0.917 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.619 -16.350 -7.251 22.481 hybrid contribution -0.131 1.876 -0.487 1.942 sum -13.750 -14.474 -7.738 21.411 Atomic orbital electron populations 1.21736 0.93114 1.02721 1.02614 1.21244 0.97126 0.93464 1.02823 1.23604 0.91386 1.02342 1.06149 1.87809 1.08924 1.08271 1.98275 1.23472 0.95083 0.98165 1.09226 1.20229 0.90318 0.82448 0.75729 1.90706 1.63298 1.39310 1.51351 1.48115 1.07277 1.05933 1.72111 1.22019 0.95002 0.85152 0.99244 1.21848 0.96227 0.99911 0.98421 1.21980 0.94883 0.97751 1.02789 1.21654 0.96103 0.95609 0.97063 0.92905 1.21342 0.92687 0.92425 0.89786 0.96357 1.22653 0.96680 0.95974 1.00921 1.22719 0.96720 0.99831 0.97023 1.21887 0.90841 0.92977 0.94670 1.44763 1.45765 1.17895 1.26046 1.18110 1.37884 0.86137 0.94145 0.94288 1.25850 0.97517 0.94116 1.00936 1.69877 1.43974 1.08235 1.36486 0.86199 0.80147 0.74714 0.82559 1.18363 1.24398 1.20034 1.21622 0.80027 1.00333 0.98148 0.91844 0.91606 0.92002 0.91582 0.91786 0.88933 0.88621 0.85079 0.84439 0.86488 0.90205 0.92303 0.90067 0.89414 0.94430 0.90494 0.89914 0.88465 0.91938 0.95291 0.94116 0.92690 0.91732 0.89569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.91 71.98 0.71 -0.50 16 2 C -0.11 -1.34 5.94 30.59 0.18 -1.16 16 3 C -0.09 -1.14 5.94 71.98 0.43 -0.72 16 4 S -0.26 -5.82 20.87 -56.49 -1.18 -7.00 16 5 C -0.11 -2.08 4.77 71.23 0.34 -1.74 16 6 C 0.52 14.88 7.72 87.66 0.68 15.55 16 7 O -0.57 -20.81 15.28 -3.05 -0.05 -20.86 16 8 N -0.60 -16.76 2.97 -818.98 -2.43 -19.20 16 9 C 0.11 2.41 6.34 86.36 0.55 2.96 16 10 C -0.13 -3.73 6.08 30.67 0.19 -3.54 16 11 C -0.14 -5.43 3.72 30.62 0.11 -5.32 16 12 C -0.08 -3.14 1.97 -10.73 -0.02 -3.16 16 13 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 14 C 0.14 5.82 1.99 45.34 0.09 5.91 16 15 H 0.02 0.83 3.56 -2.38 -0.01 0.82 16 16 C -0.12 -4.08 5.41 31.78 0.17 -3.90 16 17 C -0.12 -3.96 7.08 31.98 0.23 -3.74 16 18 C 0.12 4.77 7.23 86.85 0.63 5.39 16 19 N -0.62 -28.86 2.58 -668.25 -1.73 -30.59 16 20 C -0.23 -12.80 8.40 84.03 0.71 -12.10 16 21 H 0.04 2.42 8.06 -2.91 -0.02 2.40 16 22 C 0.01 0.76 3.65 84.86 0.31 1.07 16 23 N -0.94 -55.40 13.97 21.65 0.30 -55.10 16 24 Si 0.93 45.35 23.33 68.60 1.60 46.95 16 25 H -0.26 -11.60 5.62 99.48 0.56 -11.04 16 26 H -0.31 -15.68 7.11 99.48 0.71 -14.97 16 27 H -0.27 -13.31 7.10 99.48 0.71 -12.60 16 28 C 0.12 3.96 5.25 86.35 0.45 4.41 16 29 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.13 1.95 7.69 -2.39 -0.02 1.93 16 37 H 0.14 1.81 7.94 -2.39 -0.02 1.79 16 38 H 0.12 1.67 5.93 -2.39 -0.01 1.65 16 39 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.09 4.33 4.35 -2.39 -0.01 4.32 16 43 H 0.04 1.56 5.90 -2.39 -0.01 1.54 16 44 H 0.08 2.42 7.23 -2.39 -0.02 2.40 16 45 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 46 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 47 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 48 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 51 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 52 H 0.09 2.90 5.79 -2.39 -0.01 2.88 16 Total: -1.00 -69.71 393.43 3.00 -66.71 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.73 Total: 19.66 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 5.75 Total: -0.57 kcal Atomic # 7 Polarization: -101.02 SS G_CDS: -3.86 Total: -104.88 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.05 Total: -20.86 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.60 Total: 46.95 kcal Atomic # 16 Polarization: -5.82 SS G_CDS: -1.18 Total: -7.00 kcal Total: -69.71 3.00 -66.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120329806.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.232 kcal (2) G-P(sol) polarization free energy of solvation -69.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds