Wall clock time and date at job start Sat Apr 11 2020 06:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.52999 * 109.46811 * 294.99812 * 3 2 1 6 6 C 1.52999 * 109.47054 * 174.99886 * 3 2 1 7 7 N 1.46902 * 109.47028 * 184.99888 * 6 3 2 8 8 C 1.46897 * 111.00151 * 180.02562 * 7 6 3 9 9 C 1.53947 * 113.57896 * 252.72077 * 8 7 6 10 10 C 1.52904 * 86.78475 * 220.65992 * 9 8 7 11 11 C 1.52912 * 88.04093 * 24.89498 * 10 9 8 12 12 C 1.52907 * 121.13984 * 150.61188 * 10 9 8 13 13 C 1.53955 * 86.78314 * 100.82452 * 12 10 9 14 14 N 1.46497 * 113.58070 * 139.33735 * 13 12 10 15 15 C 1.34779 * 120.00042 * 107.27907 * 14 13 12 16 16 O 1.21277 * 119.99487 * 0.02562 * 15 14 13 17 17 C 1.50699 * 119.99876 * 180.02562 * 15 14 13 18 18 S 1.81005 * 109.47002 * 180.02562 * 17 15 14 19 19 C 1.76189 * 99.99855 * 179.97438 * 18 17 15 20 20 H 1.07996 * 120.00471 * 359.97438 * 19 18 17 21 21 C 1.38801 * 120.00052 * 179.97438 * 19 18 17 22 22 N 1.31629 * 120.00505 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99768 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47445 * 89.99907 * 23 21 19 25 25 H 1.48495 * 109.47066 * 210.00115 * 23 21 19 26 26 H 1.48504 * 109.47151 * 329.99836 * 23 21 19 27 27 C 1.52910 * 121.14034 * 259.17828 * 10 9 8 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 33 33 H 1.09001 * 109.47273 * 300.00152 * 5 3 2 34 34 H 1.08998 * 109.47609 * 60.00099 * 5 3 2 35 35 H 1.09002 * 109.46911 * 180.02562 * 5 3 2 36 36 H 1.08997 * 109.47369 * 304.99623 * 6 3 2 37 37 H 1.09003 * 109.47054 * 64.99704 * 6 3 2 38 38 H 1.00902 * 111.00042 * 56.04500 * 7 6 3 39 39 H 1.09001 * 112.82586 * 23.90419 * 8 7 6 40 40 H 1.08998 * 113.66280 * 335.13413 * 9 8 7 41 41 H 1.09005 * 113.66694 * 106.18831 * 9 8 7 42 42 H 1.08996 * 113.66818 * 220.62833 * 11 10 9 43 43 H 1.09004 * 113.65912 * 89.57376 * 11 10 9 44 44 H 1.08997 * 113.66501 * 215.29986 * 12 10 9 45 45 H 1.09006 * 113.66219 * 346.35637 * 12 10 9 46 46 H 1.09001 * 113.57559 * 270.13433 * 13 12 10 47 47 H 0.97001 * 119.99928 * 287.28223 * 14 13 12 48 48 H 1.09004 * 109.47104 * 300.00000 * 17 15 14 49 49 H 1.08995 * 109.47126 * 60.00223 * 17 15 14 50 50 H 0.97002 * 120.00118 * 179.97438 * 22 21 19 51 51 H 1.08999 * 113.66016 * 13.65013 * 27 10 9 52 52 H 1.09005 * 113.66105 * 144.61134 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4444 0.1258 7 7 4.0446 2.8276 0.2461 8 6 5.5078 2.8686 0.3685 9 6 5.9977 3.2254 1.7836 10 6 7.0614 4.0887 1.1044 11 6 6.1284 4.1965 -0.1022 12 6 7.6195 5.3383 1.7865 13 6 8.8434 4.4822 2.1597 14 7 10.1181 5.1914 2.0236 15 6 10.7936 5.5804 3.1231 16 8 10.3464 5.3429 4.2251 17 6 12.1045 6.3104 2.9829 18 16 12.7604 6.6935 4.6259 19 6 14.2502 7.5192 4.1757 20 1 14.5025 7.6482 3.1336 21 6 15.0999 8.0039 5.1604 22 7 16.2132 8.6204 4.8242 23 14 14.6634 7.7814 6.9631 24 1 15.2290 6.4995 7.4549 25 1 15.2275 8.9063 7.7515 26 1 13.1863 7.7617 7.1159 27 6 8.5002 3.5946 0.9496 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 2.0699 1.5874 -2.1492 34 1 0.5490 2.1252 -1.3970 35 1 1.9990 3.1541 -1.3076 36 1 3.8570 0.8801 1.0113 37 1 4.0029 0.9835 -0.7596 38 1 3.6032 3.2972 1.0225 39 1 5.9922 1.9876 -0.0526 40 1 5.2754 3.7982 2.3652 41 1 6.4075 2.3770 2.3318 42 1 6.6423 4.1238 -1.0606 43 1 5.4427 5.0423 -0.0507 44 1 7.8473 6.1493 1.0949 45 1 7.0353 5.6649 2.6469 46 1 8.7427 3.9717 3.1175 47 1 10.4758 5.3810 1.1421 48 1 12.8150 5.6817 2.4461 49 1 11.9476 7.2360 2.4291 50 1 16.8068 8.9595 5.5124 51 1 8.6196 2.5283 1.1414 52 1 8.9751 3.9143 0.0220 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120665198.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:29 Heat of formation + Delta-G solvation = -40.080060 kcal Electronic energy + Delta-G solvation = -26189.497330 eV Core-core repulsion = 22507.549941 eV Total energy + Delta-G solvation = -3681.947389 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.78640 -40.30316 -38.46788 -36.84086 -34.68754 -34.54761 -32.88724 -30.67644 -29.95396 -27.86526 -26.93793 -26.81273 -26.68245 -24.35532 -23.29609 -22.00597 -21.58332 -20.69257 -19.91440 -18.87750 -17.91550 -17.44790 -17.07654 -16.62475 -16.45888 -16.43515 -16.18405 -15.94951 -15.64844 -15.40870 -15.02699 -14.78215 -14.57197 -14.15055 -14.02299 -13.68462 -13.59198 -13.40201 -13.35098 -13.16921 -13.13065 -13.01198 -12.90899 -12.76339 -12.66308 -12.49022 -12.22957 -12.04291 -11.88742 -11.74328 -11.47950 -11.41377 -11.23489 -11.17638 -11.08801 -11.00125 -10.72250 -10.54006 -10.01485 -9.21456 -9.00221 -8.52121 -6.22960 0.99021 1.30743 1.46511 1.55456 1.56106 2.23354 2.28703 2.72112 2.86277 3.17621 3.47610 3.49312 3.61513 3.76276 3.88816 3.92261 3.94565 4.01821 4.09078 4.21553 4.24094 4.40537 4.44065 4.47127 4.47569 4.65907 4.69439 4.73074 4.78164 4.83399 4.87182 4.87678 4.90351 4.93508 5.00101 5.02448 5.10159 5.17681 5.21384 5.23107 5.24794 5.30082 5.39480 5.45788 5.54447 5.60327 5.60654 5.70227 6.10844 6.20481 6.50356 6.51577 6.93248 7.21643 8.60341 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.042118 B = 0.001438 C = 0.001413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.645432 B =19462.222610 C =19816.600219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.087 4.087 4 H 0.066 0.934 5 C -0.135 4.135 6 C 0.065 3.935 7 N -0.680 5.680 8 C 0.076 3.924 9 C -0.143 4.143 10 C -0.095 4.095 11 C -0.103 4.103 12 C -0.134 4.134 13 C 0.115 3.885 14 N -0.701 5.701 15 C 0.535 3.465 16 O -0.566 6.566 17 C -0.112 4.112 18 S -0.177 6.177 19 C -0.530 4.530 20 H 0.062 0.938 21 C 0.047 3.953 22 N -0.917 5.917 23 Si 0.914 3.086 24 H -0.262 1.262 25 H -0.258 1.258 26 H -0.238 1.238 27 C -0.106 4.106 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.027 0.973 37 H 0.068 0.932 38 H 0.344 0.656 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.058 0.942 46 H 0.088 0.912 47 H 0.417 0.583 48 H 0.114 0.886 49 H 0.114 0.886 50 H 0.277 0.723 51 H 0.080 0.920 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.849 -16.545 -15.265 38.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.105 4.105 4 H 0.084 0.916 5 C -0.193 4.193 6 C -0.064 4.064 7 N -0.310 5.310 8 C -0.034 4.034 9 C -0.182 4.182 10 C -0.096 4.096 11 C -0.141 4.141 12 C -0.173 4.173 13 C 0.010 3.990 14 N -0.354 5.354 15 C 0.320 3.680 16 O -0.444 6.444 17 C -0.263 4.263 18 S 0.049 5.951 19 C -0.677 4.677 20 H 0.081 0.919 21 C -0.158 4.158 22 N -0.555 5.555 23 Si 0.736 3.264 24 H -0.187 1.187 25 H -0.183 1.183 26 H -0.162 1.162 27 C -0.144 4.144 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.045 0.955 37 H 0.086 0.914 38 H 0.163 0.837 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.112 0.888 45 H 0.077 0.923 46 H 0.106 0.894 47 H 0.254 0.746 48 H 0.132 0.868 49 H 0.132 0.868 50 H 0.086 0.914 51 H 0.099 0.901 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -31.436 -16.753 -14.105 38.313 hybrid contribution 1.398 0.369 0.163 1.455 sum -30.039 -16.384 -13.942 36.948 Atomic orbital electron populations 1.21805 0.95479 1.01775 1.01955 1.21536 0.96299 0.95885 1.01951 1.21134 0.94216 0.96293 0.98898 0.91583 1.21717 1.00489 1.00776 0.96271 1.22034 0.95119 0.89138 1.00103 1.60444 1.05020 1.16087 1.49450 1.22953 0.87560 0.98377 0.94546 1.23443 0.97971 0.99202 0.97607 1.21984 0.93355 0.96103 0.98190 1.22825 0.96756 0.97750 0.96768 1.23284 0.96168 0.97483 1.00359 1.22607 0.81802 0.94556 1.00032 1.45779 1.22750 1.58385 1.08481 1.20013 0.85009 0.78155 0.84778 1.90677 1.69657 1.56558 1.27530 1.23291 0.97461 1.04325 1.01208 1.84718 1.25365 1.74899 1.10116 1.22467 1.06468 1.42337 0.96465 0.91933 1.25543 0.93751 0.93114 1.03398 1.70014 1.11983 1.37565 1.35935 0.85879 0.81421 0.79311 0.79834 1.18682 1.18253 1.16182 1.23048 0.93922 0.99816 0.97610 0.92545 0.92338 0.92900 0.92196 0.91903 0.93381 0.92831 0.92478 0.95451 0.91370 0.83690 0.88533 0.89564 0.91666 0.90675 0.89746 0.88809 0.92270 0.89365 0.74560 0.86819 0.86830 0.91351 0.90145 0.87363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.67 71.98 0.70 -0.49 16 2 C -0.12 -0.99 5.40 30.60 0.17 -0.82 16 3 C -0.09 -0.79 2.53 -10.79 -0.03 -0.82 16 4 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 5 C -0.14 -1.34 8.84 71.98 0.64 -0.71 16 6 C 0.07 0.65 4.92 86.30 0.42 1.08 16 7 N -0.68 -7.34 6.07 -488.30 -2.96 -10.30 16 8 C 0.08 0.84 4.18 45.55 0.19 1.03 16 9 C -0.14 -1.79 7.46 30.88 0.23 -1.56 16 10 C -0.10 -1.25 1.11 -52.31 -0.06 -1.31 16 11 C -0.10 -1.18 7.64 30.88 0.24 -0.94 16 12 C -0.13 -2.37 7.64 30.89 0.24 -2.13 16 13 C 0.11 2.37 4.24 45.63 0.19 2.56 16 14 N -0.70 -16.33 5.35 -439.52 -2.35 -18.68 16 15 C 0.53 18.41 7.85 87.66 0.69 19.09 16 16 O -0.57 -24.44 15.46 -3.02 -0.05 -24.49 16 17 C -0.11 -4.21 6.16 71.24 0.44 -3.77 16 18 S -0.18 -9.03 18.55 -56.49 -1.05 -10.08 16 19 C -0.53 -30.98 10.04 67.95 0.68 -30.29 16 20 H 0.06 3.85 8.03 -2.91 -0.02 3.82 16 21 C 0.05 2.79 5.50 84.86 0.47 3.26 16 22 N -0.92 -55.97 13.97 21.65 0.30 -55.67 16 23 Si 0.91 45.20 27.74 68.60 1.90 47.10 16 24 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 25 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 26 H -0.24 -11.79 6.74 99.48 0.67 -11.12 16 27 C -0.11 -1.42 7.59 30.89 0.23 -1.18 16 28 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.06 0.45 6.57 -2.39 -0.02 0.43 16 30 H 0.05 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.05 0.49 6.57 -2.39 -0.02 0.47 16 35 H 0.06 0.68 7.75 -2.39 -0.02 0.66 16 36 H 0.03 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.07 0.74 8.13 -2.39 -0.02 0.72 16 38 H 0.34 3.51 8.19 -89.69 -0.73 2.77 16 39 H 0.10 1.06 7.86 -2.39 -0.02 1.04 16 40 H 0.09 1.10 7.82 -2.39 -0.02 1.08 16 41 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 42 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.09 1.54 8.14 -2.39 -0.02 1.53 16 45 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 46 H 0.09 2.32 7.47 -2.39 -0.02 2.30 16 47 H 0.42 6.88 8.73 -92.71 -0.81 6.07 16 48 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 49 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 50 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 51 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 52 H 0.11 1.10 8.12 -2.38 -0.02 1.08 16 Total: -1.00 -71.38 424.53 0.54 -70.85 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -0.69 Total: 18.29 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: 5.43 Total: -17.02 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -5.02 Total: -84.65 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.05 Total: -24.49 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.90 Total: 47.10 kcal Atomic # 16 Polarization: -9.03 SS G_CDS: -1.05 Total: -10.08 kcal Total: -71.38 0.54 -70.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120665198.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.769 kcal (2) G-P(sol) polarization free energy of solvation -71.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds