Wall clock time and date at job start Sat Apr 11 2020 06:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47358 * 2 1 4 4 H 1.08999 * 109.47056 * 305.00485 * 3 2 1 5 5 C 1.53005 * 109.47161 * 65.00316 * 3 2 1 6 6 C 1.52996 * 109.47332 * 185.00373 * 3 2 1 7 7 N 1.46900 * 109.47597 * 175.00402 * 6 3 2 8 8 C 1.46895 * 111.00553 * 180.02562 * 7 6 3 9 9 C 1.53950 * 113.58341 * 204.99806 * 8 7 6 10 10 C 1.52906 * 86.78455 * 220.66318 * 9 8 7 11 11 C 1.52908 * 88.04275 * 24.89347 * 10 9 8 12 12 C 1.52903 * 121.13785 * 150.61668 * 10 9 8 13 13 C 1.53950 * 86.78406 * 100.82080 * 12 10 9 14 14 N 1.46498 * 113.58091 * 139.33335 * 13 12 10 15 15 C 1.34777 * 119.99828 * 154.72203 * 14 13 12 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 13 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 13 18 18 S 1.81000 * 109.47389 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99715 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00516 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99710 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00163 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00011 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46661 * 60.00586 * 23 21 19 25 25 H 1.48501 * 109.47391 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47355 * 300.00441 * 23 21 19 27 27 C 1.52909 * 121.13282 * 259.17906 * 10 9 8 28 28 H 1.08994 * 109.47630 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46917 * 300.00219 * 1 2 3 30 30 H 1.09006 * 109.47503 * 59.99362 * 1 2 3 31 31 H 1.08999 * 109.46883 * 240.00269 * 2 1 3 32 32 H 1.09000 * 109.47489 * 120.00186 * 2 1 3 33 33 H 1.08999 * 109.46998 * 60.00133 * 5 3 2 34 34 H 1.09003 * 109.47389 * 179.97438 * 5 3 2 35 35 H 1.08999 * 109.46885 * 300.00218 * 5 3 2 36 36 H 1.08999 * 109.47624 * 54.99791 * 6 3 2 37 37 H 1.09000 * 109.47016 * 294.99959 * 6 3 2 38 38 H 1.00902 * 110.99901 * 56.04090 * 7 6 3 39 39 H 1.09004 * 112.87304 * 336.13983 * 8 7 6 40 40 H 1.09002 * 113.66170 * 106.18622 * 9 8 7 41 41 H 1.09001 * 113.74263 * 335.14937 * 9 8 7 42 42 H 1.08998 * 113.65914 * 89.57541 * 11 10 9 43 43 H 1.08997 * 113.66644 * 220.62688 * 11 10 9 44 44 H 1.08997 * 113.66436 * 346.34569 * 12 10 9 45 45 H 1.09007 * 113.66113 * 215.29406 * 12 10 9 46 46 H 1.09004 * 113.57627 * 270.05367 * 13 12 10 47 47 H 0.97001 * 120.00384 * 335.00649 * 14 13 12 48 48 H 1.08998 * 109.46954 * 300.00581 * 17 15 14 49 49 H 1.09002 * 109.46946 * 59.99717 * 17 15 14 50 50 H 0.96991 * 119.99795 * 179.97438 * 22 21 19 51 51 H 1.09009 * 113.66047 * 144.70645 * 27 10 9 52 52 H 1.08996 * 113.66496 * 13.64919 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5648 1.4443 -0.1258 7 7 4.0447 2.8275 -0.2461 8 6 5.5078 2.8683 -0.3697 9 6 6.1289 4.1961 0.1008 10 6 7.0609 4.0885 -1.1066 11 6 5.9966 3.2255 -1.7852 12 6 7.6185 5.3382 -1.7888 13 6 8.9226 5.0732 -1.0147 14 7 10.1323 5.3043 -1.8080 15 6 11.2914 5.6149 -1.1945 16 8 11.3342 5.6982 0.0147 17 6 12.5345 5.8588 -2.0108 18 16 13.9143 6.2504 -0.9068 19 6 15.1980 6.4809 -2.0915 20 1 14.9876 6.3680 -3.1448 21 6 16.4796 6.8086 -1.6711 22 7 16.7361 6.9467 -0.3874 23 14 17.8408 7.0522 -2.9270 24 1 17.4721 8.1569 -3.8485 25 1 19.1054 7.3924 -2.2267 26 1 18.0272 5.8006 -3.7041 27 6 8.4997 3.5942 -0.9530 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.0700 1.5874 2.1492 34 1 1.9991 3.1541 1.3077 35 1 0.5491 2.1252 1.3970 36 1 3.8571 0.8800 -1.0114 37 1 4.0029 0.9835 0.7595 38 1 3.7314 3.3879 0.5323 39 1 5.9932 1.9871 0.0497 40 1 6.6436 4.1231 1.0588 41 1 5.4443 5.0428 0.0509 42 1 5.2738 3.7985 -2.3659 43 1 6.4058 2.3772 -2.3339 44 1 7.1146 6.2589 -1.4948 45 1 7.7228 5.2372 -2.8692 46 1 8.9572 5.5591 -0.0395 47 1 10.0982 5.2377 -2.7752 48 1 12.7725 4.9641 -2.5862 49 1 12.3645 6.6935 -2.6910 50 1 17.6317 7.1753 -0.0937 51 1 8.8517 3.0030 -1.7985 52 1 8.6997 3.1217 0.0086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120665199.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:33 Heat of formation + Delta-G solvation = -19.360993 kcal Electronic energy + Delta-G solvation = -26139.644004 eV Core-core repulsion = 22458.595061 eV Total energy + Delta-G solvation = -3681.048943 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.93784 -38.94620 -37.93838 -35.99515 -33.60961 -32.41820 -32.00197 -29.70556 -28.85542 -26.77631 -26.00854 -25.99621 -25.48363 -23.63683 -22.60091 -20.85779 -20.33501 -20.21711 -18.19894 -17.74842 -16.63830 -16.32730 -16.07689 -16.01797 -15.56370 -15.27927 -14.85733 -14.79531 -14.49384 -14.25909 -13.98747 -13.70111 -13.44843 -13.19442 -12.98329 -12.94331 -12.64349 -12.49932 -12.44795 -12.34056 -12.30520 -11.99562 -11.76259 -11.45861 -11.31397 -11.18118 -11.03539 -11.02967 -10.98201 -10.96153 -10.77366 -10.58439 -10.33884 -10.14990 -9.79877 -9.32689 -9.05090 -8.80369 -8.77820 -8.22519 -6.48623 -6.20447 -3.90952 3.07310 3.10330 3.24249 3.28483 3.33091 3.72340 3.75777 4.19250 4.21785 4.23387 4.33139 4.38621 4.41421 4.49635 4.61139 4.68241 4.75878 4.84506 5.01338 5.06550 5.06770 5.14068 5.14686 5.16759 5.27128 5.34380 5.41310 5.48706 5.52059 5.52945 5.57175 5.58149 5.59683 5.60776 5.62197 5.66036 5.72113 5.75876 5.84241 5.90979 5.93254 5.94331 6.03543 6.12564 6.16373 6.25867 6.73415 6.76327 7.00503 7.60312 7.76987 8.36123 8.65420 9.24714 10.86976 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.045309 B = 0.001383 C = 0.001376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.830177 B =20236.022677 C =20346.035836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.092 4.092 4 H 0.079 0.921 5 C -0.152 4.152 6 C 0.062 3.938 7 N -0.679 5.679 8 C 0.060 3.940 9 C -0.119 4.119 10 C -0.103 4.103 11 C -0.107 4.107 12 C -0.129 4.129 13 C 0.129 3.871 14 N -0.729 5.729 15 C 0.532 3.468 16 O -0.519 6.519 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C -0.128 4.128 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.028 0.972 38 H 0.340 0.660 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.087 0.913 46 H 0.113 0.887 47 H 0.398 0.602 48 H 0.089 0.911 49 H 0.089 0.911 50 H 0.269 0.731 51 H 0.087 0.913 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.053 -11.346 -1.969 34.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.110 4.110 4 H 0.097 0.903 5 C -0.209 4.209 6 C -0.067 4.067 7 N -0.310 5.310 8 C -0.050 4.050 9 C -0.156 4.156 10 C -0.104 4.104 11 C -0.145 4.145 12 C -0.167 4.167 13 C 0.023 3.977 14 N -0.381 5.381 15 C 0.318 3.682 16 O -0.393 6.393 17 C -0.305 4.305 18 S 0.166 5.834 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.167 4.167 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.047 0.953 38 H 0.160 0.840 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.105 0.895 46 H 0.131 0.869 47 H 0.232 0.768 48 H 0.107 0.893 49 H 0.108 0.892 50 H 0.079 0.921 51 H 0.106 0.894 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -31.932 -11.129 -0.459 33.819 hybrid contribution 1.121 -0.250 -1.781 2.119 sum -30.811 -11.380 -2.240 32.922 Atomic orbital electron populations 1.21807 0.95741 1.01536 1.01951 1.21540 0.96060 0.96188 1.01975 1.21189 0.94816 0.96200 0.98842 0.90266 1.21914 1.01598 1.00424 0.96959 1.22066 0.94566 0.89912 1.00195 1.60661 1.10001 1.11233 1.49127 1.23014 0.86889 0.97171 0.97884 1.22967 0.97723 0.97578 0.97380 1.22053 0.93515 0.97207 0.97615 1.22856 0.96770 0.98931 0.95938 1.23169 0.95775 0.97796 1.00001 1.22397 0.82888 0.95669 0.96710 1.46008 1.08858 1.73239 1.10027 1.20346 0.84046 0.75176 0.88585 1.90690 1.84861 1.49495 1.14270 1.23546 0.98282 1.04698 1.03983 1.85385 0.98157 1.90767 1.09071 1.22836 0.95915 1.55372 0.94343 0.90994 1.24985 0.97993 0.94652 0.95880 1.70008 1.21768 1.44793 1.13765 0.86232 0.80032 0.78792 0.80490 1.19932 1.20803 1.19947 1.23218 0.93172 0.97536 1.02755 0.92880 0.92523 0.92701 0.91944 0.92134 0.92987 0.92504 0.92294 0.91080 0.95340 0.84003 0.91039 0.91134 0.89045 0.89166 0.91812 0.90744 0.89470 0.86929 0.76803 0.89269 0.89247 0.92138 0.89449 0.90996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.67 37.16 0.36 -0.33 16 2 C -0.12 -0.59 5.40 -26.73 -0.14 -0.74 16 3 C -0.09 -0.50 2.60 -90.62 -0.24 -0.73 16 4 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 5 C -0.15 -0.75 8.72 37.16 0.32 -0.43 16 6 C 0.06 0.39 4.99 -3.83 -0.02 0.37 16 7 N -0.68 -4.64 6.56 -105.69 -0.69 -5.34 16 8 C 0.06 0.45 4.14 -66.73 -0.28 0.17 16 9 C -0.12 -0.91 7.41 -26.28 -0.19 -1.11 16 10 C -0.10 -0.85 1.11 -154.72 -0.17 -1.03 16 11 C -0.11 -0.83 7.64 -26.28 -0.20 -1.03 16 12 C -0.13 -1.14 7.59 -26.29 -0.20 -1.34 16 13 C 0.13 1.52 4.24 -66.95 -0.28 1.24 16 14 N -0.73 -9.79 5.35 -52.85 -0.28 -10.08 16 15 C 0.53 10.01 7.85 -10.98 -0.09 9.92 16 16 O -0.52 -11.88 15.46 5.55 0.09 -11.79 16 17 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.54 -15.38 9.50 30.94 0.29 -15.08 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 23 Si 0.92 21.47 29.55 -169.99 -5.02 16.44 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 C -0.13 -1.30 7.64 -26.28 -0.20 -1.50 16 28 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.25 6.57 -51.93 -0.34 -0.09 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.06 0.28 6.68 -51.93 -0.35 -0.07 16 35 H 0.06 0.27 6.56 -51.93 -0.34 -0.07 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.03 0.19 8.13 -51.93 -0.42 -0.24 16 38 H 0.34 2.12 6.80 -39.29 -0.27 1.85 16 39 H 0.07 0.57 7.87 -51.93 -0.41 0.16 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.09 0.69 8.12 -51.92 -0.42 0.27 16 46 H 0.11 1.58 7.46 -51.93 -0.39 1.19 16 47 H 0.40 4.18 8.73 -40.82 -0.36 3.83 16 48 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 49 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 50 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 51 H 0.09 0.86 8.14 -51.92 -0.42 0.44 16 52 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 425.48 15.07 6.41 6.41 Total: -1.00 -33.28 425.48 -11.49 -44.77 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -9.60 Total: 1.50 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -0.91 Total: -12.49 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: -0.24 Total: -40.98 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.09 Total: -11.79 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -33.28 -11.49 -44.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120665199.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.411 kcal (2) G-P(sol) polarization free energy of solvation -33.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds