Wall clock time and date at job start Sat Apr 11 2020 06:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47358 * 2 1 4 4 H 1.08999 * 109.47056 * 305.00485 * 3 2 1 5 5 C 1.53005 * 109.47161 * 65.00316 * 3 2 1 6 6 C 1.52996 * 109.47332 * 185.00373 * 3 2 1 7 7 N 1.46900 * 109.47597 * 175.00402 * 6 3 2 8 8 C 1.46895 * 111.00553 * 180.02562 * 7 6 3 9 9 C 1.53950 * 113.58341 * 204.99806 * 8 7 6 10 10 C 1.52906 * 86.78455 * 220.66318 * 9 8 7 11 11 C 1.52908 * 88.04275 * 24.89347 * 10 9 8 12 12 C 1.52903 * 121.13785 * 150.61668 * 10 9 8 13 13 C 1.53950 * 86.78406 * 100.82080 * 12 10 9 14 14 N 1.46498 * 113.58091 * 139.33335 * 13 12 10 15 15 C 1.34777 * 119.99828 * 154.72203 * 14 13 12 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 13 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 13 18 18 S 1.81000 * 109.47389 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99715 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00516 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99710 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00163 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00011 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46661 * 60.00586 * 23 21 19 25 25 H 1.48501 * 109.47391 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47355 * 300.00441 * 23 21 19 27 27 C 1.52909 * 121.13282 * 259.17906 * 10 9 8 28 28 H 1.08994 * 109.47630 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46917 * 300.00219 * 1 2 3 30 30 H 1.09006 * 109.47503 * 59.99362 * 1 2 3 31 31 H 1.08999 * 109.46883 * 240.00269 * 2 1 3 32 32 H 1.09000 * 109.47489 * 120.00186 * 2 1 3 33 33 H 1.08999 * 109.46998 * 60.00133 * 5 3 2 34 34 H 1.09003 * 109.47389 * 179.97438 * 5 3 2 35 35 H 1.08999 * 109.46885 * 300.00218 * 5 3 2 36 36 H 1.08999 * 109.47624 * 54.99791 * 6 3 2 37 37 H 1.09000 * 109.47016 * 294.99959 * 6 3 2 38 38 H 1.00902 * 110.99901 * 56.04090 * 7 6 3 39 39 H 1.09004 * 112.87304 * 336.13983 * 8 7 6 40 40 H 1.09002 * 113.66170 * 106.18622 * 9 8 7 41 41 H 1.09001 * 113.74263 * 335.14937 * 9 8 7 42 42 H 1.08998 * 113.65914 * 89.57541 * 11 10 9 43 43 H 1.08997 * 113.66644 * 220.62688 * 11 10 9 44 44 H 1.08997 * 113.66436 * 346.34569 * 12 10 9 45 45 H 1.09007 * 113.66113 * 215.29406 * 12 10 9 46 46 H 1.09004 * 113.57627 * 270.05367 * 13 12 10 47 47 H 0.97001 * 120.00384 * 335.00649 * 14 13 12 48 48 H 1.08998 * 109.46954 * 300.00581 * 17 15 14 49 49 H 1.09002 * 109.46946 * 59.99717 * 17 15 14 50 50 H 0.96991 * 119.99795 * 179.97438 * 22 21 19 51 51 H 1.09009 * 113.66047 * 144.70645 * 27 10 9 52 52 H 1.08996 * 113.66496 * 13.64919 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5648 1.4443 -0.1258 7 7 4.0447 2.8275 -0.2461 8 6 5.5078 2.8683 -0.3697 9 6 6.1289 4.1961 0.1008 10 6 7.0609 4.0885 -1.1066 11 6 5.9966 3.2255 -1.7852 12 6 7.6185 5.3382 -1.7888 13 6 8.9226 5.0732 -1.0147 14 7 10.1323 5.3043 -1.8080 15 6 11.2914 5.6149 -1.1945 16 8 11.3342 5.6982 0.0147 17 6 12.5345 5.8588 -2.0108 18 16 13.9143 6.2504 -0.9068 19 6 15.1980 6.4809 -2.0915 20 1 14.9876 6.3680 -3.1448 21 6 16.4796 6.8086 -1.6711 22 7 16.7361 6.9467 -0.3874 23 14 17.8408 7.0522 -2.9270 24 1 17.4721 8.1569 -3.8485 25 1 19.1054 7.3924 -2.2267 26 1 18.0272 5.8006 -3.7041 27 6 8.4997 3.5942 -0.9530 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.0700 1.5874 2.1492 34 1 1.9991 3.1541 1.3077 35 1 0.5491 2.1252 1.3970 36 1 3.8571 0.8800 -1.0114 37 1 4.0029 0.9835 0.7595 38 1 3.7314 3.3879 0.5323 39 1 5.9932 1.9871 0.0497 40 1 6.6436 4.1231 1.0588 41 1 5.4443 5.0428 0.0509 42 1 5.2738 3.7985 -2.3659 43 1 6.4058 2.3772 -2.3339 44 1 7.1146 6.2589 -1.4948 45 1 7.7228 5.2372 -2.8692 46 1 8.9572 5.5591 -0.0395 47 1 10.0982 5.2377 -2.7752 48 1 12.7725 4.9641 -2.5862 49 1 12.3645 6.6935 -2.6910 50 1 17.6317 7.1753 -0.0937 51 1 8.8517 3.0030 -1.7985 52 1 8.6997 3.1217 0.0086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120665199.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:32 Heat of formation + Delta-G solvation = -40.232436 kcal Electronic energy + Delta-G solvation = -26140.549058 eV Core-core repulsion = 22458.595061 eV Total energy + Delta-G solvation = -3681.953997 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.75767 -40.24846 -38.53628 -36.80599 -34.60060 -34.52450 -32.90987 -30.61150 -29.91664 -27.67474 -27.27382 -26.79440 -26.59623 -24.35410 -23.28861 -21.78596 -21.48284 -20.70467 -19.83696 -18.84994 -17.87019 -17.41029 -16.93081 -16.87425 -16.64302 -16.34038 -16.18559 -16.01620 -15.79775 -15.03967 -14.82723 -14.67494 -14.49866 -14.19574 -14.00683 -13.89120 -13.62877 -13.39598 -13.34315 -13.16886 -12.97129 -12.87681 -12.85962 -12.72634 -12.63120 -12.41284 -12.13707 -11.98332 -11.80969 -11.69987 -11.44964 -11.39884 -11.26103 -11.12656 -11.07705 -10.96211 -10.71643 -10.27751 -9.99453 -9.34459 -8.66733 -8.34293 -6.12684 1.27593 1.44190 1.47432 1.57379 1.61226 2.27277 2.34302 2.99801 3.16544 3.32559 3.46317 3.57046 3.62512 3.73603 3.86461 3.95531 3.98140 4.02115 4.07308 4.12806 4.31378 4.37714 4.44110 4.46588 4.51394 4.63570 4.65945 4.73654 4.77927 4.79579 4.81136 4.88204 4.95541 4.97664 5.01421 5.02602 5.07010 5.14471 5.16249 5.21067 5.22953 5.25165 5.39293 5.41627 5.47473 5.55084 5.55480 5.63208 6.19455 6.19778 6.48733 6.55478 7.06813 7.27786 8.74794 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.045309 B = 0.001383 C = 0.001376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.830177 B =20236.022677 C =20346.035836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.086 4.086 4 H 0.072 0.928 5 C -0.150 4.150 6 C 0.064 3.936 7 N -0.679 5.679 8 C 0.063 3.937 9 C -0.118 4.118 10 C -0.095 4.095 11 C -0.098 4.098 12 C -0.113 4.113 13 C 0.114 3.886 14 N -0.702 5.702 15 C 0.533 3.467 16 O -0.568 6.568 17 C -0.130 4.130 18 S -0.153 6.153 19 C -0.548 4.548 20 H 0.083 0.917 21 C 0.014 3.986 22 N -0.912 5.912 23 Si 0.998 3.002 24 H -0.262 1.262 25 H -0.279 1.279 26 H -0.262 1.262 27 C -0.125 4.125 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.025 0.975 38 H 0.344 0.656 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.066 0.934 44 H 0.080 0.920 45 H 0.106 0.894 46 H 0.087 0.913 47 H 0.416 0.584 48 H 0.109 0.891 49 H 0.110 0.890 50 H 0.271 0.729 51 H 0.096 0.904 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.427 -11.727 -4.489 35.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.105 4.105 4 H 0.091 0.909 5 C -0.207 4.207 6 C -0.065 4.065 7 N -0.311 5.311 8 C -0.047 4.047 9 C -0.155 4.155 10 C -0.096 4.096 11 C -0.137 4.137 12 C -0.151 4.151 13 C 0.009 3.991 14 N -0.355 5.355 15 C 0.319 3.681 16 O -0.447 6.447 17 C -0.282 4.282 18 S 0.074 5.926 19 C -0.696 4.696 20 H 0.101 0.899 21 C -0.190 4.190 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.186 1.186 25 H -0.204 1.204 26 H -0.186 1.186 27 C -0.164 4.164 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.043 0.957 38 H 0.164 0.836 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.118 0.882 42 H 0.112 0.888 43 H 0.084 0.916 44 H 0.099 0.901 45 H 0.124 0.876 46 H 0.105 0.895 47 H 0.254 0.746 48 H 0.128 0.872 49 H 0.128 0.872 50 H 0.080 0.920 51 H 0.114 0.886 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -33.363 -11.526 -3.023 35.427 hybrid contribution 1.408 -0.178 -0.991 1.731 sum -31.955 -11.705 -4.014 34.267 Atomic orbital electron populations 1.21799 0.95323 1.01803 1.02018 1.21529 0.96411 0.95824 1.01902 1.21123 0.94074 0.96462 0.98797 0.90914 1.21897 1.01874 1.00351 0.96590 1.22048 0.95135 0.89543 0.99784 1.60669 1.09501 1.11572 1.49379 1.22946 0.87281 0.96709 0.97778 1.22983 0.97653 0.98111 0.96798 1.21945 0.92707 0.96886 0.98103 1.22800 0.96242 0.98720 0.95898 1.23138 0.93093 0.98240 1.00674 1.22599 0.83181 0.97107 0.96202 1.45785 1.07676 1.70928 1.11079 1.20124 0.84950 0.75261 0.87744 1.90680 1.85622 1.52165 1.16218 1.23391 0.95918 1.06234 1.02608 1.85577 1.02205 1.91417 1.13368 1.23186 0.96364 1.55392 0.94659 0.89896 1.26125 1.00875 0.93923 0.98107 1.70179 1.22506 1.45891 1.16253 0.85010 0.76132 0.79350 0.77541 1.18611 1.20378 1.18646 1.23194 0.94503 0.96193 1.02491 0.92544 0.92339 0.92739 0.92037 0.92198 0.93126 0.92439 0.91872 0.91569 0.95657 0.83561 0.91708 0.91945 0.88225 0.88844 0.91574 0.90134 0.87593 0.89521 0.74616 0.87248 0.87198 0.91988 0.88559 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.67 71.98 0.70 -0.51 16 2 C -0.12 -1.06 5.40 30.59 0.17 -0.89 16 3 C -0.09 -0.84 2.60 -10.79 -0.03 -0.87 16 4 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 5 C -0.15 -1.32 8.72 71.98 0.63 -0.70 16 6 C 0.06 0.74 4.99 86.30 0.43 1.17 16 7 N -0.68 -8.36 6.56 -488.30 -3.20 -11.56 16 8 C 0.06 0.85 4.14 45.55 0.19 1.04 16 9 C -0.12 -1.66 7.41 30.88 0.23 -1.43 16 10 C -0.10 -1.41 1.11 -52.32 -0.06 -1.47 16 11 C -0.10 -1.30 7.64 30.88 0.24 -1.06 16 12 C -0.11 -1.71 7.59 30.88 0.23 -1.48 16 13 C 0.11 2.58 4.24 45.63 0.19 2.77 16 14 N -0.70 -17.76 5.35 -439.51 -2.35 -20.11 16 15 C 0.53 19.91 7.85 87.66 0.69 20.59 16 16 O -0.57 -26.82 15.46 -3.04 -0.05 -26.86 16 17 C -0.13 -5.20 6.16 71.24 0.44 -4.76 16 18 S -0.15 -8.57 20.57 -56.49 -1.16 -9.74 16 19 C -0.55 -31.50 9.50 67.96 0.65 -30.85 16 20 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 21 C 0.01 0.83 5.49 84.86 0.47 1.29 16 22 N -0.91 -56.38 13.22 21.65 0.29 -56.09 16 23 Si 1.00 43.64 29.55 68.60 2.03 45.67 16 24 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 25 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 27 C -0.13 -2.40 7.64 30.88 0.24 -2.17 16 28 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.06 0.44 6.57 -2.39 -0.02 0.42 16 30 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.06 0.50 6.68 -2.39 -0.02 0.48 16 35 H 0.06 0.51 6.56 -2.39 -0.02 0.49 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.03 0.31 8.13 -2.39 -0.02 0.29 16 38 H 0.34 3.82 6.80 -89.69 -0.61 3.21 16 39 H 0.07 0.98 7.87 -2.39 -0.02 0.96 16 40 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.11 1.26 8.12 -2.38 -0.02 1.24 16 46 H 0.09 2.48 7.46 -2.39 -0.02 2.46 16 47 H 0.42 7.51 8.73 -92.71 -0.81 6.70 16 48 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 49 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 50 H 0.27 15.58 8.31 -92.72 -0.77 14.81 16 51 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 52 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -74.27 425.48 0.41 -73.85 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: -0.52 Total: 24.16 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: 5.39 Total: -19.31 kcal Atomic # 7 Polarization: -82.50 SS G_CDS: -5.27 Total: -87.77 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.05 Total: -26.86 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.74 kcal Total: -74.27 0.41 -73.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120665199.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.619 kcal (2) G-P(sol) polarization free energy of solvation -74.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds