Wall clock time and date at job start Sat Apr 11 2020 06:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47330 * 2 1 4 4 H 1.09001 * 109.46676 * 54.99353 * 3 2 1 5 5 C 1.53005 * 109.46947 * 295.00021 * 3 2 1 6 6 C 1.52995 * 109.47480 * 175.00144 * 3 2 1 7 7 N 1.46900 * 109.47241 * 185.28837 * 6 3 2 8 8 C 1.46840 * 111.00230 * 197.10240 * 7 6 3 9 9 C 1.50141 * 110.28480 * 287.52580 * 8 7 6 10 10 C 1.29820 * 123.27944 * 342.98454 * 9 8 7 11 11 C 1.50699 * 118.55066 * 180.35654 * 10 9 8 12 12 C 1.53003 * 109.47426 * 94.97588 * 11 10 9 13 13 N 1.46502 * 109.47028 * 179.97438 * 12 11 10 14 14 C 1.34780 * 119.99738 * 179.97438 * 13 12 11 15 15 O 1.21272 * 120.00079 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99768 * 180.02562 * 14 13 12 17 17 S 1.81001 * 109.47030 * 180.02562 * 16 14 13 18 18 C 1.76202 * 100.00131 * 179.97438 * 17 16 14 19 19 H 1.07995 * 119.99623 * 0.02562 * 18 17 16 20 20 C 1.38792 * 120.00125 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00198 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00085 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47217 * 89.99740 * 22 20 18 24 24 H 1.48500 * 109.47048 * 210.00251 * 22 20 18 25 25 H 1.48503 * 109.47030 * 330.00080 * 22 20 18 26 26 C 1.50311 * 122.89642 * 0.32692 * 10 9 8 27 27 C 1.47248 * 110.99737 * 74.17482 * 7 6 3 28 28 H 1.09003 * 109.47112 * 59.99976 * 1 2 3 29 29 H 1.09000 * 109.47104 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47197 * 300.00162 * 1 2 3 31 31 H 1.09006 * 109.47375 * 239.99996 * 2 1 3 32 32 H 1.09001 * 109.47364 * 119.99541 * 2 1 3 33 33 H 1.09008 * 109.46900 * 65.83046 * 5 3 2 34 34 H 1.08996 * 109.46785 * 185.83126 * 5 3 2 35 35 H 1.08995 * 109.47076 * 305.83451 * 5 3 2 36 36 H 1.09001 * 109.46876 * 305.28577 * 6 3 2 37 37 H 1.09000 * 109.47528 * 65.28280 * 6 3 2 38 38 H 1.09006 * 109.32966 * 47.78838 * 8 7 6 39 39 H 1.08999 * 109.33664 * 167.28494 * 8 7 6 40 40 H 1.07992 * 118.35742 * 162.94564 * 9 8 7 41 41 H 1.09001 * 109.47188 * 214.97673 * 11 10 9 42 42 H 1.08999 * 109.47222 * 334.97388 * 11 10 9 43 43 H 1.08999 * 109.47214 * 299.99703 * 12 11 10 44 44 H 1.09005 * 109.46615 * 60.00224 * 12 11 10 45 45 H 0.97002 * 120.00067 * 0.02562 * 13 12 11 46 46 H 1.09001 * 109.47455 * 300.00408 * 16 14 13 47 47 H 1.08999 * 109.47323 * 60.00348 * 16 14 13 48 48 H 0.97002 * 120.00277 * 179.97438 * 21 20 18 49 49 H 1.08997 * 109.42983 * 223.45467 * 26 10 9 50 50 H 1.09000 * 109.42881 * 103.60310 * 26 10 9 51 51 H 1.09006 * 109.63058 * 174.28139 * 27 7 6 52 52 H 1.08996 * 109.63624 * 294.88549 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5648 1.4444 0.1257 7 7 4.0440 2.8272 0.2530 8 6 5.4826 2.9137 -0.0283 9 6 6.2706 2.3143 1.1003 10 6 5.7728 2.0950 2.2790 11 6 6.6632 1.4955 3.3368 12 6 7.2667 2.6136 4.1892 13 7 8.1318 2.0306 5.2178 14 6 8.7748 2.8315 6.0906 15 8 8.6369 4.0345 6.0248 16 6 9.6652 2.2319 7.1484 17 16 10.3790 3.5546 8.1569 18 6 11.3445 2.5976 9.2779 19 1 11.3565 1.5207 9.1969 20 6 12.0904 3.2277 10.2642 21 7 12.8121 2.5128 11.1013 22 14 12.0702 5.0904 10.4038 23 1 10.9740 5.5066 11.3150 24 1 13.3702 5.5602 10.9463 25 1 11.8502 5.6850 9.0610 26 6 4.3477 2.4133 2.6355 27 6 3.7547 3.3646 1.5931 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.5498 2.2180 -1.3487 34 1 2.0854 3.1181 -1.3531 35 1 1.9820 1.5308 -2.1517 36 1 3.8573 0.8758 1.0085 37 1 4.0032 0.9882 -0.7619 38 1 5.7032 2.3740 -0.9494 39 1 5.7644 3.9596 -0.1495 40 1 7.3030 2.0519 0.9225 41 1 6.0769 0.8310 3.9714 42 1 7.4637 0.9297 2.8600 43 1 7.8532 3.2780 3.5546 44 1 6.4662 3.1792 4.6660 45 1 8.2425 1.0684 5.2703 46 1 9.0787 1.5676 7.7832 47 1 10.4654 1.6659 6.6716 48 1 13.3337 2.9532 11.7905 49 1 4.3164 2.8860 3.6172 50 1 3.7654 1.4922 2.6587 51 1 4.2071 4.3508 1.6977 52 1 2.6763 3.4363 1.7340 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159332627.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:35 Heat of formation + Delta-G solvation = -42.948489 kcal Electronic energy + Delta-G solvation = -26594.069484 eV Core-core repulsion = 22911.997711 eV Total energy + Delta-G solvation = -3682.071774 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.41397 -39.25612 -37.07667 -35.54991 -33.54360 -32.44698 -31.34477 -30.79328 -29.89776 -28.30619 -27.05431 -25.62788 -24.67545 -24.11292 -23.03410 -21.68764 -20.55286 -20.06024 -18.00038 -17.82742 -16.65992 -16.31067 -16.00050 -15.77384 -15.66509 -15.39352 -14.96687 -14.92304 -14.87269 -14.46131 -13.93629 -13.73880 -13.66186 -13.35041 -13.24306 -12.96743 -12.84193 -12.80336 -12.49734 -12.30999 -12.20488 -12.17926 -12.04680 -11.73653 -11.67331 -11.36147 -11.27136 -11.17214 -11.01355 -10.95991 -10.89878 -10.69771 -10.61746 -9.86762 -9.57004 -9.17218 -9.03002 -8.97149 -8.64121 -8.50981 -6.92756 -6.29685 -4.01571 1.76385 2.76752 2.96558 3.30520 3.33963 3.50169 3.52650 3.66300 4.27612 4.32548 4.38153 4.47678 4.57152 4.59390 4.69659 4.71270 4.76846 4.82278 4.88288 4.95991 5.05879 5.09443 5.11137 5.13633 5.23229 5.25751 5.27895 5.30989 5.33031 5.36071 5.44394 5.48754 5.57020 5.59585 5.63739 5.68437 5.69064 5.74160 5.77175 5.77807 5.86777 5.99947 6.00330 6.08355 6.14781 6.50547 6.53892 6.64527 6.75291 7.58989 7.93331 8.40679 8.47718 9.16534 10.79526 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.030691 B = 0.001561 C = 0.001538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.113051 B =17930.449356 C =18197.408743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.086 4.086 4 H 0.069 0.931 5 C -0.139 4.139 6 C 0.051 3.949 7 N -0.525 5.525 8 C 0.082 3.918 9 C -0.188 4.188 10 C -0.112 4.112 11 C -0.097 4.097 12 C 0.129 3.871 13 N -0.739 5.739 14 C 0.530 3.470 15 O -0.520 6.520 16 C -0.124 4.124 17 S -0.142 6.142 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C -0.123 4.123 27 C 0.051 3.949 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.067 0.933 35 H 0.047 0.953 36 H 0.046 0.954 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.109 0.891 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.399 0.601 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.271 0.729 49 H 0.080 0.920 50 H 0.077 0.923 51 H 0.078 0.922 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.039 -5.620 -26.293 35.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.105 4.105 4 H 0.087 0.913 5 C -0.197 4.197 6 C -0.077 4.077 7 N -0.247 5.247 8 C -0.046 4.046 9 C -0.207 4.207 10 C -0.113 4.113 11 C -0.134 4.134 12 C 0.005 3.995 13 N -0.393 5.393 14 C 0.316 3.684 15 O -0.394 6.394 16 C -0.275 4.275 17 S 0.084 5.916 18 C -0.670 4.670 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.161 4.161 27 C -0.077 4.077 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.127 0.873 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.233 0.767 46 H 0.115 0.885 47 H 0.115 0.885 48 H 0.081 0.919 49 H 0.099 0.901 50 H 0.096 0.904 51 H 0.097 0.903 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -23.400 -3.305 -26.620 35.596 hybrid contribution 0.974 -1.815 1.121 2.345 sum -22.426 -5.120 -25.499 34.341 Atomic orbital electron populations 1.21790 0.95750 1.01474 1.01939 1.21566 0.96062 0.96383 1.01822 1.21138 0.94511 0.95722 0.99161 0.91265 1.21764 1.00347 1.01408 0.96157 1.22301 0.95253 0.89036 1.01139 1.62692 1.14260 1.20281 1.27449 1.21100 0.85938 1.01364 0.96177 1.22802 1.00787 1.01455 0.95676 1.20722 0.95595 1.00366 0.94639 1.20903 0.98376 0.97620 0.96526 1.21204 0.93630 0.95340 0.89318 1.45991 1.49418 1.10280 1.33628 1.20287 0.79665 0.87027 0.81447 1.90699 1.62440 1.14564 1.71695 1.23282 1.01120 1.04091 0.98992 1.84794 1.58971 1.10549 1.37256 1.22318 1.31722 0.96003 1.16920 0.89398 1.24707 0.93594 0.98921 0.94039 1.69937 1.28172 1.36099 1.17478 0.86734 0.78423 0.85323 0.81376 1.19198 1.19910 1.15931 1.21061 0.93203 1.01000 1.00860 1.22280 1.00985 0.98029 0.86420 0.92457 0.92942 0.92831 0.92069 0.92274 0.93340 0.91400 0.93386 0.93626 0.91218 0.89997 0.89428 0.87305 0.90666 0.90726 0.91610 0.91625 0.76711 0.88502 0.88466 0.91935 0.90140 0.90440 0.90312 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.67 37.15 0.36 -0.39 16 2 C -0.12 -0.63 5.40 -26.73 -0.14 -0.77 16 3 C -0.09 -0.49 2.43 -90.62 -0.22 -0.71 16 4 H 0.07 0.43 6.79 -51.93 -0.35 0.08 16 5 C -0.14 -0.81 8.76 37.16 0.33 -0.48 16 6 C 0.05 0.32 3.84 -3.83 -0.01 0.30 16 7 N -0.53 -3.58 4.34 -236.11 -1.03 -4.61 16 8 C 0.08 0.55 5.94 -5.28 -0.03 0.52 16 9 C -0.19 -1.41 9.17 -35.96 -0.33 -1.74 16 10 C -0.11 -0.87 4.65 -100.92 -0.47 -1.34 16 11 C -0.10 -0.77 5.38 -27.88 -0.15 -0.92 16 12 C 0.13 1.44 5.66 -4.04 -0.02 1.42 16 13 N -0.74 -9.37 5.56 -60.29 -0.33 -9.71 16 14 C 0.53 9.49 7.85 -10.98 -0.09 9.41 16 15 O -0.52 -11.39 15.86 5.56 0.09 -11.30 16 16 C -0.12 -2.41 6.16 36.01 0.22 -2.19 16 17 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 18 C -0.52 -15.10 10.04 30.94 0.31 -14.79 16 19 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 20 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 21 N -0.88 -26.60 13.97 55.49 0.78 -25.83 16 22 Si 0.86 21.86 27.74 -169.99 -4.72 17.15 16 23 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 25 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 26 C -0.12 -0.87 5.24 -28.03 -0.15 -1.02 16 27 C 0.05 0.35 5.82 -3.59 -0.02 0.33 16 28 H 0.06 0.27 6.70 -51.93 -0.35 -0.07 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.26 6.86 -51.92 -0.36 -0.09 16 34 H 0.07 0.46 7.61 -51.93 -0.40 0.07 16 35 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.05 0.31 5.30 -51.93 -0.28 0.04 16 37 H 0.07 0.45 7.75 -51.93 -0.40 0.04 16 38 H 0.08 0.49 7.79 -51.93 -0.40 0.09 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.11 0.80 7.81 -52.49 -0.41 0.39 16 41 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 42 H 0.07 0.55 7.85 -51.93 -0.41 0.15 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.40 3.86 8.47 -40.82 -0.35 3.51 16 46 H 0.10 1.74 8.14 -51.91 -0.42 1.32 16 47 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 48 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 49 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 50 H 0.08 0.52 6.63 -51.93 -0.34 0.18 16 51 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 52 H 0.08 0.51 6.92 -51.93 -0.36 0.15 16 LS Contribution 417.03 15.07 6.28 6.28 Total: -1.00 -33.27 417.03 -10.91 -44.18 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -9.47 Total: -0.90 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -0.52 Total: -9.65 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: -0.59 Total: -40.14 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.72 Total: 17.15 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.27 -10.91 -44.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159332627.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.229 kcal (2) G-P(sol) polarization free energy of solvation -33.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds