Wall clock time and date at job start Sat Apr 11 2020 06:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47330 * 2 1 4 4 H 1.09001 * 109.46676 * 54.99353 * 3 2 1 5 5 C 1.53005 * 109.46947 * 295.00021 * 3 2 1 6 6 C 1.52995 * 109.47480 * 175.00144 * 3 2 1 7 7 N 1.46900 * 109.47241 * 185.28837 * 6 3 2 8 8 C 1.46840 * 111.00230 * 197.10240 * 7 6 3 9 9 C 1.50141 * 110.28480 * 287.52580 * 8 7 6 10 10 C 1.29820 * 123.27944 * 342.98454 * 9 8 7 11 11 C 1.50699 * 118.55066 * 180.35654 * 10 9 8 12 12 C 1.53003 * 109.47426 * 94.97588 * 11 10 9 13 13 N 1.46502 * 109.47028 * 179.97438 * 12 11 10 14 14 C 1.34780 * 119.99738 * 179.97438 * 13 12 11 15 15 O 1.21272 * 120.00079 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99768 * 180.02562 * 14 13 12 17 17 S 1.81001 * 109.47030 * 180.02562 * 16 14 13 18 18 C 1.76202 * 100.00131 * 179.97438 * 17 16 14 19 19 H 1.07995 * 119.99623 * 0.02562 * 18 17 16 20 20 C 1.38792 * 120.00125 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00198 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00085 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47217 * 89.99740 * 22 20 18 24 24 H 1.48500 * 109.47048 * 210.00251 * 22 20 18 25 25 H 1.48503 * 109.47030 * 330.00080 * 22 20 18 26 26 C 1.50311 * 122.89642 * 0.32692 * 10 9 8 27 27 C 1.47248 * 110.99737 * 74.17482 * 7 6 3 28 28 H 1.09003 * 109.47112 * 59.99976 * 1 2 3 29 29 H 1.09000 * 109.47104 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47197 * 300.00162 * 1 2 3 31 31 H 1.09006 * 109.47375 * 239.99996 * 2 1 3 32 32 H 1.09001 * 109.47364 * 119.99541 * 2 1 3 33 33 H 1.09008 * 109.46900 * 65.83046 * 5 3 2 34 34 H 1.08996 * 109.46785 * 185.83126 * 5 3 2 35 35 H 1.08995 * 109.47076 * 305.83451 * 5 3 2 36 36 H 1.09001 * 109.46876 * 305.28577 * 6 3 2 37 37 H 1.09000 * 109.47528 * 65.28280 * 6 3 2 38 38 H 1.09006 * 109.32966 * 47.78838 * 8 7 6 39 39 H 1.08999 * 109.33664 * 167.28494 * 8 7 6 40 40 H 1.07992 * 118.35742 * 162.94564 * 9 8 7 41 41 H 1.09001 * 109.47188 * 214.97673 * 11 10 9 42 42 H 1.08999 * 109.47222 * 334.97388 * 11 10 9 43 43 H 1.08999 * 109.47214 * 299.99703 * 12 11 10 44 44 H 1.09005 * 109.46615 * 60.00224 * 12 11 10 45 45 H 0.97002 * 120.00067 * 0.02562 * 13 12 11 46 46 H 1.09001 * 109.47455 * 300.00408 * 16 14 13 47 47 H 1.08999 * 109.47323 * 60.00348 * 16 14 13 48 48 H 0.97002 * 120.00277 * 179.97438 * 21 20 18 49 49 H 1.08997 * 109.42983 * 223.45467 * 26 10 9 50 50 H 1.09000 * 109.42881 * 103.60310 * 26 10 9 51 51 H 1.09006 * 109.63058 * 174.28139 * 27 7 6 52 52 H 1.08996 * 109.63624 * 294.88549 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5648 1.4444 0.1257 7 7 4.0440 2.8272 0.2530 8 6 5.4826 2.9137 -0.0283 9 6 6.2706 2.3143 1.1003 10 6 5.7728 2.0950 2.2790 11 6 6.6632 1.4955 3.3368 12 6 7.2667 2.6136 4.1892 13 7 8.1318 2.0306 5.2178 14 6 8.7748 2.8315 6.0906 15 8 8.6369 4.0345 6.0248 16 6 9.6652 2.2319 7.1484 17 16 10.3790 3.5546 8.1569 18 6 11.3445 2.5976 9.2779 19 1 11.3565 1.5207 9.1969 20 6 12.0904 3.2277 10.2642 21 7 12.8121 2.5128 11.1013 22 14 12.0702 5.0904 10.4038 23 1 10.9740 5.5066 11.3150 24 1 13.3702 5.5602 10.9463 25 1 11.8502 5.6850 9.0610 26 6 4.3477 2.4133 2.6355 27 6 3.7547 3.3646 1.5931 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.5498 2.2180 -1.3487 34 1 2.0854 3.1181 -1.3531 35 1 1.9820 1.5308 -2.1517 36 1 3.8573 0.8758 1.0085 37 1 4.0032 0.9882 -0.7619 38 1 5.7032 2.3740 -0.9494 39 1 5.7644 3.9596 -0.1495 40 1 7.3030 2.0519 0.9225 41 1 6.0769 0.8310 3.9714 42 1 7.4637 0.9297 2.8600 43 1 7.8532 3.2780 3.5546 44 1 6.4662 3.1792 4.6660 45 1 8.2425 1.0684 5.2703 46 1 9.0787 1.5676 7.7832 47 1 10.4654 1.6659 6.6716 48 1 13.3337 2.9532 11.7905 49 1 4.3164 2.8860 3.6172 50 1 3.7654 1.4922 2.6587 51 1 4.2071 4.3508 1.6977 52 1 2.6763 3.4363 1.7340 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159332627.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:34 Heat of formation + Delta-G solvation = -63.573806 kcal Electronic energy + Delta-G solvation = -26594.963865 eV Core-core repulsion = 22911.997711 eV Total energy + Delta-G solvation = -3682.966155 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.03478 -40.56218 -37.66087 -36.43737 -34.68781 -34.43033 -31.91013 -31.72577 -30.74740 -29.21634 -27.88210 -27.60072 -25.30245 -24.64667 -23.74145 -22.28861 -21.86293 -20.55658 -19.90909 -18.52901 -17.89904 -17.39389 -17.07702 -16.92473 -16.81567 -16.34328 -15.97445 -15.71275 -15.61450 -15.40811 -15.19635 -14.97660 -14.77655 -14.42037 -14.14516 -13.93109 -13.63446 -13.44665 -13.36408 -13.31852 -13.06549 -13.02411 -12.99211 -12.71798 -12.70219 -12.53231 -12.43548 -12.16986 -11.99413 -11.87634 -11.70026 -11.40797 -11.35036 -11.19951 -11.18192 -11.05939 -10.55258 -10.19082 -9.77175 -9.17528 -9.01342 -8.52617 -6.23805 0.96374 1.16387 1.30591 1.46315 1.53100 1.55736 2.21938 2.26286 2.70574 2.85714 3.01335 3.72493 3.75111 3.88899 3.97102 4.03455 4.09427 4.10315 4.16075 4.20013 4.24272 4.31801 4.42354 4.44933 4.50277 4.57219 4.63139 4.67806 4.71679 4.78677 4.80016 4.86023 4.89423 4.94270 4.99156 5.02140 5.07360 5.13048 5.20648 5.24696 5.28923 5.32359 5.36566 5.55135 5.58191 5.62888 5.69599 5.95382 6.10189 6.11873 6.22720 6.43644 6.92623 7.16100 8.59726 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.030691 B = 0.001561 C = 0.001538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.113051 B =17930.449356 C =18197.408743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.082 4.082 4 H 0.064 0.936 5 C -0.135 4.135 6 C 0.055 3.945 7 N -0.529 5.529 8 C 0.081 3.919 9 C -0.186 4.186 10 C -0.122 4.122 11 C -0.084 4.084 12 C 0.131 3.869 13 N -0.713 5.713 14 C 0.534 3.466 15 O -0.565 6.565 16 C -0.111 4.111 17 S -0.178 6.178 18 C -0.530 4.530 19 H 0.063 0.937 20 C 0.047 3.953 21 N -0.916 5.916 22 Si 0.914 3.086 23 H -0.262 1.262 24 H -0.258 1.258 25 H -0.238 1.238 26 C -0.119 4.119 27 C 0.052 3.948 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.048 0.952 36 H 0.042 0.958 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.112 0.888 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.418 0.582 46 H 0.115 0.885 47 H 0.115 0.885 48 H 0.277 0.723 49 H 0.075 0.925 50 H 0.082 0.918 51 H 0.070 0.930 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.130 -6.115 -27.656 37.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.101 4.101 4 H 0.083 0.917 5 C -0.192 4.192 6 C -0.073 4.073 7 N -0.250 5.250 8 C -0.047 4.047 9 C -0.205 4.205 10 C -0.123 4.123 11 C -0.122 4.122 12 C 0.008 3.992 13 N -0.367 5.367 14 C 0.319 3.681 15 O -0.443 6.443 16 C -0.262 4.262 17 S 0.049 5.951 18 C -0.678 4.678 19 H 0.081 0.919 20 C -0.159 4.159 21 N -0.554 5.554 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.182 1.182 25 H -0.162 1.162 26 C -0.158 4.158 27 C -0.076 4.076 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.104 0.896 40 H 0.130 0.870 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.255 0.745 46 H 0.133 0.867 47 H 0.133 0.867 48 H 0.087 0.913 49 H 0.094 0.906 50 H 0.101 0.899 51 H 0.089 0.911 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -24.505 -3.857 -28.008 37.414 hybrid contribution 1.237 -1.781 1.422 2.593 sum -23.268 -5.638 -26.586 35.777 Atomic orbital electron populations 1.21786 0.95509 1.01709 1.01903 1.21541 0.96246 0.95936 1.01862 1.21093 0.94138 0.96004 0.98864 0.91734 1.21710 1.00460 1.00788 0.96254 1.22269 0.95514 0.88585 1.00908 1.62701 1.14315 1.20662 1.27362 1.21139 0.85850 1.01364 0.96357 1.22931 1.00962 1.00822 0.95822 1.20774 0.95908 1.00964 0.94690 1.20808 0.98686 0.96488 0.96190 1.21286 0.92768 0.96403 0.88766 1.45764 1.47786 1.10897 1.32220 1.19994 0.79739 0.86600 0.81759 1.90689 1.64201 1.16400 1.73023 1.23274 1.01985 1.02052 0.98899 1.84734 1.59059 1.13480 1.37830 1.22459 1.32197 0.95278 1.17823 0.91903 1.25546 0.93307 1.03207 0.93793 1.70012 1.29090 1.38009 1.18297 0.85875 0.79158 0.80145 0.81243 1.18682 1.18249 1.16173 1.21027 0.93001 1.01157 1.00573 1.22254 1.01220 0.97614 0.86498 0.92376 0.92593 0.92987 0.91917 0.92324 0.93027 0.92443 0.93275 0.93984 0.91213 0.89105 0.89596 0.87037 0.89462 0.89630 0.92835 0.92551 0.74521 0.86724 0.86722 0.91345 0.90602 0.89947 0.91112 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.67 71.98 0.70 -0.60 16 2 C -0.12 -1.07 5.40 30.59 0.17 -0.90 16 3 C -0.08 -0.83 2.43 -10.79 -0.03 -0.86 16 4 H 0.06 0.73 6.79 -2.39 -0.02 0.71 16 5 C -0.13 -1.42 8.76 71.98 0.63 -0.79 16 6 C 0.06 0.61 3.84 86.30 0.33 0.94 16 7 N -0.53 -6.58 4.34 -900.93 -3.91 -10.50 16 8 C 0.08 0.98 5.94 85.39 0.51 1.49 16 9 C -0.19 -2.47 9.17 26.69 0.24 -2.22 16 10 C -0.12 -1.68 4.65 -15.39 -0.07 -1.75 16 11 C -0.08 -1.12 5.38 29.85 0.16 -0.96 16 12 C 0.13 2.70 5.66 86.38 0.49 3.19 16 13 N -0.71 -16.42 5.56 -463.05 -2.57 -19.00 16 14 C 0.53 18.31 7.85 87.66 0.69 19.00 16 15 O -0.56 -24.44 15.86 -3.00 -0.05 -24.49 16 16 C -0.11 -4.15 6.16 71.24 0.44 -3.71 16 17 S -0.18 -9.00 18.55 -56.49 -1.05 -10.05 16 18 C -0.53 -30.89 10.04 67.95 0.68 -30.21 16 19 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 20 C 0.05 2.76 5.50 84.86 0.47 3.23 16 21 N -0.92 -55.74 13.97 21.65 0.30 -55.44 16 22 Si 0.91 45.09 27.74 68.60 1.90 46.99 16 23 H -0.26 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 25 H -0.24 -11.75 6.74 99.48 0.67 -11.08 16 26 C -0.12 -1.52 5.24 29.75 0.16 -1.36 16 27 C 0.05 0.66 5.82 86.26 0.50 1.17 16 28 H 0.06 0.48 6.70 -2.39 -0.02 0.47 16 29 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.55 8.14 -2.38 -0.02 0.54 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.05 0.50 6.86 -2.38 -0.02 0.49 16 34 H 0.06 0.73 7.61 -2.39 -0.02 0.71 16 35 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.04 0.51 5.30 -2.39 -0.01 0.49 16 37 H 0.07 0.78 7.75 -2.39 -0.02 0.76 16 38 H 0.09 0.94 7.79 -2.38 -0.02 0.92 16 39 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.11 1.42 7.81 -2.91 -0.02 1.40 16 41 H 0.09 1.00 8.13 -2.39 -0.02 0.98 16 42 H 0.09 1.00 7.85 -2.39 -0.02 0.98 16 43 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 45 H 0.42 6.70 8.47 -92.71 -0.79 5.92 16 46 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 47 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 48 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 49 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.08 0.97 6.63 -2.39 -0.02 0.95 16 51 H 0.07 1.01 8.08 -2.38 -0.02 0.99 16 52 H 0.09 0.99 6.92 -2.39 -0.02 0.97 16 Total: -1.00 -71.62 417.03 0.74 -70.87 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.06 Total: 15.97 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: 6.06 Total: -14.35 kcal Atomic # 7 Polarization: -78.75 SS G_CDS: -6.18 Total: -84.93 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.05 Total: -24.49 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.90 Total: 46.99 kcal Atomic # 16 Polarization: -9.00 SS G_CDS: -1.05 Total: -10.05 kcal Total: -71.62 0.74 -70.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159332627.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.298 kcal (2) G-P(sol) polarization free energy of solvation -71.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds