Wall clock time and date at job start Sat Apr 11 2020 06:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50699 * 119.99891 * 2 1 4 4 N 1.46903 * 109.46929 * 125.00531 * 3 2 1 5 5 C 1.46901 * 111.00115 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.46950 * 179.97438 * 5 4 3 7 7 C 1.53007 * 109.47067 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47224 * 179.97438 * 7 6 5 9 9 C 1.46505 * 119.99619 * 90.00069 * 8 7 6 10 10 C 1.52997 * 109.47212 * 89.99960 * 9 8 7 11 11 C 1.54267 * 110.03373 * 292.90986 * 10 9 8 12 12 C 1.54968 * 104.16137 * 217.13581 * 11 10 9 13 13 C 1.54884 * 102.77441 * 37.88396 * 12 11 10 14 14 C 1.53874 * 110.03593 * 175.68906 * 10 9 8 15 15 C 1.34774 * 120.00119 * 269.99893 * 8 7 6 16 16 O 1.21270 * 120.00172 * 0.02562 * 15 8 7 17 17 C 1.50706 * 119.99638 * 180.02562 * 15 8 7 18 18 S 1.81000 * 109.46673 * 180.02562 * 17 15 8 19 19 C 1.76203 * 99.99740 * 179.97438 * 18 17 15 20 20 H 1.08006 * 119.99908 * 359.97438 * 19 18 17 21 21 C 1.38802 * 119.99865 * 180.02562 * 19 18 17 22 22 N 1.31621 * 119.99806 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99747 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.46924 * 59.99895 * 23 21 19 25 25 H 1.48499 * 109.47068 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46809 * 299.99810 * 23 21 19 27 27 H 1.07989 * 119.99938 * 179.97438 * 1 2 3 28 28 H 1.08006 * 119.99476 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.00107 * 180.02562 * 2 1 3 30 30 H 1.08995 * 109.47418 * 5.00502 * 3 2 1 31 31 H 1.08994 * 109.47355 * 245.00203 * 3 2 1 32 32 H 1.00904 * 110.99839 * 303.95433 * 4 3 2 33 33 H 1.09002 * 109.46811 * 60.00053 * 5 4 3 34 34 H 1.08993 * 109.47422 * 299.99910 * 5 4 3 35 35 H 1.09002 * 109.47165 * 60.00459 * 6 5 4 36 36 H 1.08997 * 109.47215 * 299.99754 * 6 5 4 37 37 H 1.09006 * 109.46834 * 59.99650 * 7 6 5 38 38 H 1.09003 * 109.46788 * 300.00337 * 7 6 5 39 39 H 1.09002 * 109.47068 * 210.00020 * 9 8 7 40 40 H 1.09001 * 109.47372 * 330.00108 * 9 8 7 41 41 H 1.09004 * 110.01939 * 54.29375 * 10 9 8 42 42 H 1.09001 * 110.48609 * 335.77840 * 11 10 9 43 43 H 1.08999 * 110.49311 * 98.42344 * 11 10 9 44 44 H 1.08997 * 110.72048 * 279.57487 * 12 11 10 45 45 H 1.08993 * 110.92252 * 156.29196 * 12 11 10 46 46 H 1.09009 * 110.48779 * 203.40596 * 13 12 11 47 47 H 1.09001 * 110.59973 * 80.82109 * 13 12 11 48 48 H 1.09003 * 110.03243 * 238.56963 * 14 10 9 49 49 H 1.08996 * 110.02723 * 359.95243 * 14 10 9 50 50 H 1.09004 * 109.46731 * 300.00166 * 17 15 8 51 51 H 1.08993 * 109.47109 * 60.00140 * 17 15 8 52 52 H 0.97005 * 119.99757 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9964 1.3319 1.1345 5 6 3.7506 2.5921 1.1663 6 6 4.7089 2.5830 2.3590 7 6 5.4939 3.8959 2.3925 8 7 6.4111 3.8874 3.5348 9 6 7.7702 3.3632 3.3790 10 6 8.7091 4.4965 2.9606 11 6 8.3505 4.9830 1.5413 12 6 9.7211 5.3027 0.8926 13 6 10.6311 4.1762 1.4419 14 6 10.1586 3.9841 2.8978 15 6 6.0045 4.3619 4.7290 16 8 4.8793 4.7954 4.8580 17 6 6.9482 4.3536 5.9039 18 16 6.1144 5.0487 7.3523 19 6 7.4084 4.9199 8.5413 20 1 8.3634 4.5032 8.2571 21 6 7.1999 5.3529 9.8435 22 7 6.0358 5.8601 10.1899 23 14 8.5715 5.2156 11.1042 24 1 9.7443 6.0037 10.6475 25 1 8.0989 5.7435 12.4093 26 1 8.9617 3.7911 11.2579 27 1 -0.5399 -0.9352 -0.0004 28 1 -0.5399 0.9354 0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3587 2.1316 0.0897 31 1 2.6213 1.4027 -0.9313 32 1 2.5108 1.1786 2.0056 33 1 3.0576 3.4278 1.2638 34 1 4.3201 2.6982 0.2430 35 1 5.4019 1.7473 2.2618 36 1 4.1390 2.4772 3.2821 37 1 4.8006 4.7314 2.4897 38 1 6.0637 4.0021 1.4693 39 1 8.1081 2.9424 4.3261 40 1 7.7747 2.5866 2.6142 41 1 8.6354 5.3225 3.6680 42 1 7.8402 4.1961 0.9859 43 1 7.7323 5.8793 1.5899 44 1 10.0807 6.2805 1.2130 45 1 9.6583 5.2530 -0.1944 46 1 11.6765 4.4842 1.4176 47 1 10.4916 3.2580 0.8713 48 1 10.7886 4.5620 3.5741 49 1 10.1933 2.9283 3.1662 50 1 7.2535 3.3292 6.1175 51 1 7.8274 4.9530 5.6679 52 1 5.8902 6.1631 11.0999 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177218120.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:40 Heat of formation + Delta-G solvation = -38.981024 kcal Electronic energy + Delta-G solvation = -27296.909348 eV Core-core repulsion = 23615.009616 eV Total energy + Delta-G solvation = -3681.899732 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.91998 -38.11741 -37.37240 -35.43548 -33.99073 -32.41748 -31.72095 -29.68954 -29.11566 -28.69684 -26.13970 -25.44164 -24.70626 -23.47139 -21.78237 -20.80120 -20.03316 -19.95276 -18.99956 -17.65970 -16.84369 -16.47839 -16.35122 -15.62592 -15.44774 -15.09374 -14.79682 -14.72321 -14.61806 -14.21112 -13.88472 -13.85888 -13.66615 -13.48242 -13.00924 -12.68442 -12.67849 -12.40623 -12.24879 -11.99673 -11.81709 -11.64615 -11.31484 -11.25622 -11.21495 -11.15681 -11.03622 -11.02883 -10.93624 -10.83891 -10.75029 -10.62036 -10.47120 -9.80260 -9.79651 -9.31079 -9.04738 -8.72881 -8.46492 -8.20897 -6.48436 -6.20317 -3.90639 1.90164 2.96120 3.09067 3.23925 3.26382 3.29597 3.61304 4.00819 4.21712 4.44151 4.49122 4.55256 4.62425 4.77879 4.81249 4.98510 5.01329 5.08605 5.14030 5.14784 5.21959 5.25077 5.29282 5.35396 5.36663 5.37046 5.46702 5.53149 5.54687 5.58071 5.61984 5.66798 5.68073 5.73840 5.77879 5.85056 5.93268 5.95810 6.05948 6.10427 6.15137 6.16797 6.19349 6.27529 6.32124 6.34300 6.71239 6.79086 7.10169 7.59086 7.61085 8.36248 8.61188 9.24861 10.87067 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.007799 B = 0.002808 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3589.379801 B = 9968.055189 C =12972.792375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.150 4.150 3 C 0.083 3.917 4 N -0.689 5.689 5 C 0.063 3.937 6 C -0.133 4.133 7 C 0.117 3.883 8 N -0.616 5.616 9 C 0.118 3.882 10 C -0.114 4.114 11 C -0.116 4.116 12 C -0.126 4.126 13 C -0.123 4.123 14 C -0.119 4.119 15 C 0.534 3.466 16 O -0.517 6.517 17 C -0.149 4.149 18 S -0.063 6.063 19 C -0.534 4.534 20 H 0.071 0.929 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.917 3.083 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.034 0.966 31 H 0.079 0.921 32 H 0.345 0.655 33 H 0.033 0.967 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.066 0.934 49 H 0.066 0.934 50 H 0.087 0.913 51 H 0.088 0.912 52 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.700 -8.119 -23.644 25.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.168 4.168 3 C -0.046 4.046 4 N -0.320 5.320 5 C -0.067 4.067 6 C -0.172 4.172 7 C -0.006 4.006 8 N -0.350 5.350 9 C -0.005 4.005 10 C -0.133 4.133 11 C -0.154 4.154 12 C -0.164 4.164 13 C -0.161 4.161 14 C -0.157 4.157 15 C 0.322 3.678 16 O -0.391 6.391 17 C -0.300 4.300 18 S 0.164 5.836 19 C -0.682 4.682 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.744 3.256 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.199 1.199 27 H 0.118 0.882 28 H 0.113 0.887 29 H 0.132 0.868 30 H 0.052 0.948 31 H 0.097 0.903 32 H 0.163 0.837 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.085 0.915 49 H 0.085 0.915 50 H 0.106 0.894 51 H 0.106 0.894 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.408 -7.723 -23.628 24.861 hybrid contribution 1.551 -0.036 0.995 1.843 sum 1.959 -7.758 -22.633 24.006 Atomic orbital electron populations 1.23918 0.95980 1.01984 1.00921 1.22941 0.95565 0.98753 0.99582 1.21077 0.93806 0.94420 0.95260 1.60449 1.29544 1.35446 1.06527 1.21879 0.95947 0.89896 0.98980 1.21933 0.98557 0.98470 0.98285 1.21390 0.92796 0.97918 0.88536 1.47915 1.13205 1.63868 1.10054 1.21720 0.81116 0.95241 1.02434 1.22283 0.94499 0.98784 0.97771 1.22484 0.96936 1.00860 0.95111 1.22517 0.95510 0.98755 0.99571 1.22343 0.99090 0.98640 0.96023 1.22148 0.95292 1.01398 0.96909 1.20321 0.88079 0.76302 0.83111 1.90684 1.20426 1.44899 1.83102 1.23569 1.02114 1.05141 0.99154 1.85380 1.19610 1.80141 0.98495 1.22812 1.00256 1.48293 0.96863 0.91038 1.24984 0.96382 0.94560 0.97632 1.70008 1.22232 1.38701 1.19380 0.86244 0.81115 0.78625 0.79644 1.19950 1.20824 1.19928 0.88244 0.88685 0.86773 0.94800 0.90263 0.83721 0.94911 0.91030 0.91096 0.91288 0.90113 0.90593 0.90024 0.90500 0.90311 0.91547 0.91730 0.91610 0.91884 0.91933 0.91792 0.91480 0.91501 0.89427 0.89352 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.34 14.32 29.01 0.42 -0.93 16 2 C -0.15 -1.17 9.78 -36.03 -0.35 -1.52 16 3 C 0.08 0.68 6.13 -4.97 -0.03 0.65 16 4 N -0.69 -6.52 6.49 -115.06 -0.75 -7.27 16 5 C 0.06 0.59 5.69 -3.82 -0.02 0.57 16 6 C -0.13 -1.47 5.80 -26.73 -0.15 -1.62 16 7 C 0.12 1.36 5.09 -4.04 -0.02 1.34 16 8 N -0.62 -8.44 2.39 -173.68 -0.41 -8.86 16 9 C 0.12 1.29 4.36 -4.04 -0.02 1.27 16 10 C -0.11 -1.18 3.14 -89.50 -0.28 -1.46 16 11 C -0.12 -1.07 5.23 -25.03 -0.13 -1.20 16 12 C -0.13 -1.03 6.91 -24.70 -0.17 -1.20 16 13 C -0.12 -0.97 6.83 -25.08 -0.17 -1.14 16 14 C -0.12 -1.08 6.46 -25.61 -0.17 -1.24 16 15 C 0.53 10.06 7.69 -10.98 -0.08 9.97 16 16 O -0.52 -11.71 15.44 5.57 0.09 -11.63 16 17 C -0.15 -3.04 4.71 36.01 0.17 -2.87 16 18 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 19 C -0.53 -15.22 9.50 30.94 0.29 -14.93 16 20 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 23 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 H 0.10 0.60 8.06 -52.49 -0.42 0.18 16 28 H 0.09 0.64 7.84 -52.48 -0.41 0.23 16 29 H 0.11 0.87 8.06 -52.49 -0.42 0.45 16 30 H 0.03 0.28 7.79 -51.93 -0.40 -0.13 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.34 3.36 8.72 -39.29 -0.34 3.02 16 33 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 1.09 7.42 -51.93 -0.39 0.71 16 38 H 0.08 0.70 5.65 -51.93 -0.29 0.40 16 39 H 0.08 0.94 6.44 -51.93 -0.33 0.60 16 40 H 0.08 0.69 7.95 -51.93 -0.41 0.28 16 41 H 0.08 1.00 7.35 -51.93 -0.38 0.62 16 42 H 0.07 0.55 6.22 -51.93 -0.32 0.23 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.07 0.56 7.67 -51.93 -0.40 0.16 16 50 H 0.09 1.67 7.40 -51.91 -0.38 1.29 16 51 H 0.09 1.69 7.30 -51.92 -0.38 1.31 16 52 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 425.66 15.07 6.41 6.41 Total: -1.00 -33.06 425.66 -11.47 -44.54 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -9.49 Total: 2.12 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -0.82 Total: -12.29 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: -0.43 Total: -41.65 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.09 Total: -11.63 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -33.06 -11.47 -44.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177218120.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.557 kcal (2) G-P(sol) polarization free energy of solvation -33.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds