Wall clock time and date at job start Sat Apr 11 2020 06:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47216 * 2 1 4 4 N 1.46893 * 109.46793 * 179.97438 * 3 2 1 5 5 C 1.48538 * 111.00224 * 52.60437 * 4 3 2 6 6 C 1.54936 * 103.22634 * 159.71799 * 5 4 3 7 7 C 1.54599 * 102.92246 * 322.58231 * 6 5 4 8 8 C 1.47905 * 110.99881 * 169.99939 * 4 3 2 9 9 H 1.09006 * 110.08246 * 333.59796 * 8 4 3 10 10 C 1.53004 * 109.92011 * 94.80070 * 8 4 3 11 11 C 1.53038 * 109.45899 * 184.04422 * 10 8 4 12 12 C 1.53200 * 109.30974 * 178.61310 * 11 10 8 13 13 N 1.46931 * 108.77009 * 54.63689 * 12 11 10 14 14 C 1.34781 * 120.62475 * 126.36855 * 13 12 11 15 15 O 1.21274 * 120.00344 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99423 * 179.97438 * 14 13 12 17 17 S 1.81001 * 109.46896 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99894 * 180.02562 * 17 16 14 19 19 H 1.07991 * 120.00323 * 359.97438 * 18 17 16 20 20 C 1.38805 * 119.99766 * 179.97438 * 18 17 16 21 21 N 1.31633 * 120.00034 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46807 * 179.97438 * 22 20 18 24 24 H 1.48497 * 109.46906 * 300.00462 * 22 20 18 25 25 H 1.48498 * 109.47018 * 60.00200 * 22 20 18 26 26 C 1.46919 * 118.74042 * 306.64083 * 13 12 11 27 27 C 1.52758 * 109.00854 * 53.31179 * 26 13 12 28 28 H 1.09008 * 109.47473 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47726 * 300.00530 * 1 2 3 30 30 H 1.09004 * 109.46829 * 60.00508 * 1 2 3 31 31 H 1.08998 * 109.47209 * 239.99453 * 2 1 3 32 32 H 1.09000 * 109.46436 * 119.99738 * 2 1 3 33 33 H 1.08994 * 109.46781 * 59.99455 * 3 2 1 34 34 H 1.09004 * 109.46807 * 299.99505 * 3 2 1 35 35 H 1.09001 * 110.66673 * 41.28706 * 5 4 3 36 36 H 1.08999 * 110.66750 * 278.15227 * 5 4 3 37 37 H 1.09007 * 110.72409 * 204.22927 * 6 5 4 38 38 H 1.08997 * 110.72822 * 80.94125 * 6 5 4 39 39 H 1.08999 * 110.31393 * 263.04207 * 7 6 5 40 40 H 1.09008 * 110.30573 * 140.87376 * 7 6 5 41 41 H 1.09002 * 109.44528 * 304.01674 * 10 8 4 42 42 H 1.09002 * 109.49850 * 58.66702 * 11 10 8 43 43 H 1.08993 * 109.53023 * 298.58150 * 11 10 8 44 44 H 1.08998 * 109.58347 * 294.85302 * 12 11 10 45 45 H 1.08994 * 109.58698 * 174.41952 * 12 11 10 46 46 H 1.09001 * 109.47454 * 60.00304 * 16 14 13 47 47 H 1.09003 * 109.47322 * 299.99933 * 16 14 13 48 48 H 0.97001 * 119.99662 * 179.97438 * 21 20 18 49 49 H 1.08999 * 109.58607 * 173.14348 * 26 13 12 50 50 H 1.08999 * 109.59062 * 293.56904 * 26 13 12 51 51 H 1.09000 * 109.56738 * 185.54982 * 27 26 13 52 52 H 1.09005 * 109.36353 * 65.50133 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 0.0006 5 6 4.0417 0.6000 -1.1007 6 6 5.4896 1.1222 -1.2778 7 6 5.3387 2.6439 -1.0501 8 6 4.0392 2.8021 -0.2392 9 1 3.3175 3.3908 -0.8056 10 6 4.3379 3.4881 1.0955 11 6 4.7897 4.9275 0.8391 12 6 5.0545 5.6217 2.1789 13 7 6.0133 4.8160 2.9474 14 6 7.1411 5.3705 3.4344 15 8 7.3726 6.5449 3.2394 16 6 8.1143 4.5311 4.2213 17 16 9.5162 5.5545 4.7345 18 6 10.4670 4.3553 5.6077 19 1 10.1118 3.3387 5.6880 20 6 11.6728 4.7173 6.1922 21 7 12.1057 5.9566 6.0947 22 14 12.6806 3.4461 7.1185 23 1 13.9162 4.0808 7.6434 24 1 11.8811 2.9083 8.2485 25 1 13.0458 2.3385 6.1993 26 6 5.7221 3.3932 3.1697 27 6 5.4471 2.7254 1.8236 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 3.4646 0.7496 -2.0132 36 1 4.0444 -0.4516 -0.8140 37 1 5.8532 0.9171 -2.2848 38 1 6.1517 0.6843 -0.5309 39 1 5.2544 3.1628 -2.0049 40 1 6.1872 3.0276 -0.4836 41 1 3.4376 3.4939 1.7100 42 1 4.0086 5.4635 0.2999 43 1 5.7036 4.9222 0.2452 44 1 4.1216 5.7091 2.7357 45 1 5.4706 6.6132 2.0007 46 1 8.4717 3.7102 3.5995 47 1 7.6165 4.1285 5.1035 48 1 12.9481 6.2096 6.5036 49 1 6.5785 2.9150 3.6450 50 1 4.8448 3.2953 3.8091 51 1 5.1339 1.6940 1.9850 52 1 6.3550 2.7402 1.2206 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230513224.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:50 Heat of formation + Delta-G solvation = -46.839520 kcal Electronic energy + Delta-G solvation = -28118.074333 eV Core-core repulsion = 24435.833832 eV Total energy + Delta-G solvation = -3682.240502 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.49034 -39.26766 -36.97784 -34.93898 -33.12421 -32.39777 -31.37534 -31.14575 -29.37857 -28.14409 -25.87230 -25.47264 -24.46283 -23.29111 -22.44096 -21.73043 -20.54162 -19.76952 -18.60131 -17.60247 -16.71163 -16.41804 -16.05829 -15.57336 -15.49841 -15.15344 -14.77736 -14.69843 -14.28821 -13.94827 -13.89528 -13.63446 -13.52859 -13.29087 -13.01880 -12.97642 -12.73725 -12.57448 -12.28495 -12.06596 -11.98262 -11.72276 -11.71219 -11.43893 -11.31610 -11.23823 -11.07868 -11.02782 -11.01567 -10.97388 -10.74200 -10.71291 -10.46134 -10.25394 -9.77556 -9.26551 -9.03058 -8.72265 -8.40659 -8.18673 -6.46454 -6.18478 -3.88754 3.01937 3.13412 3.25527 3.28655 3.31687 3.55638 3.67151 4.23145 4.24360 4.35161 4.57880 4.59799 4.67132 4.74441 4.79640 4.89139 4.94458 5.01410 5.06441 5.11700 5.15048 5.16371 5.19434 5.26015 5.29386 5.32985 5.38007 5.48142 5.49288 5.55485 5.62731 5.63290 5.66058 5.73766 5.74898 5.81473 5.85000 5.86883 5.89290 5.90019 5.93864 5.97136 6.03539 6.16261 6.17532 6.35453 6.62493 6.75760 6.78195 7.62038 7.67002 8.38078 8.64789 9.26549 10.88848 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016687 B = 0.002277 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.566197 B =12295.358447 C =12926.429900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C 0.048 3.952 4 N -0.510 5.510 5 C 0.036 3.964 6 C -0.124 4.124 7 C -0.133 4.133 8 C 0.073 3.927 9 H 0.051 0.949 10 C -0.068 4.068 11 C -0.130 4.130 12 C 0.115 3.885 13 N -0.619 5.619 14 C 0.535 3.465 15 O -0.521 6.521 16 C -0.149 4.149 17 S -0.062 6.062 18 C -0.534 4.534 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.283 1.283 24 H -0.274 1.274 25 H -0.274 1.274 26 C 0.107 3.893 27 C -0.122 4.122 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.032 0.968 35 H 0.041 0.959 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.092 0.908 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.268 0.732 49 H 0.087 0.913 50 H 0.063 0.937 51 H 0.085 0.915 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.726 -12.243 -15.702 30.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.080 4.080 4 N -0.234 5.234 5 C -0.091 4.091 6 C -0.162 4.162 7 C -0.171 4.171 8 C -0.035 4.035 9 H 0.069 0.931 10 C -0.087 4.087 11 C -0.169 4.169 12 C -0.008 4.008 13 N -0.355 5.355 14 C 0.323 3.677 15 O -0.395 6.395 16 C -0.300 4.300 17 S 0.164 5.836 18 C -0.683 4.683 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.744 3.256 23 H -0.208 1.208 24 H -0.199 1.199 25 H -0.200 1.200 26 C -0.016 4.016 27 C -0.160 4.160 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.110 0.890 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.078 0.922 49 H 0.106 0.894 50 H 0.082 0.918 51 H 0.104 0.896 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -22.083 -10.553 -15.424 28.929 hybrid contribution -0.057 -1.933 -0.013 1.934 sum -22.139 -12.485 -15.437 29.738 Atomic orbital electron populations 1.21739 0.95611 1.01784 1.01804 1.21588 0.95620 0.96357 1.02642 1.22333 0.87760 0.97158 1.00791 1.64689 1.07354 1.08237 1.43137 1.23206 0.94988 0.98398 0.92555 1.22491 0.96533 0.95438 1.01776 1.22579 0.98133 0.96625 0.99741 1.22417 0.95780 0.89593 0.95716 0.93133 1.21019 0.98731 0.93629 0.95298 1.22003 1.01808 0.95501 0.97604 1.21459 0.92253 0.96011 0.91061 1.48112 1.21643 1.10368 1.55378 1.20314 0.80790 0.87951 0.78677 1.90678 1.74679 1.16485 1.57686 1.23545 1.01331 1.03419 1.01700 1.85387 1.15142 1.14195 1.68831 1.22820 1.08297 0.97517 1.39633 0.91016 1.24993 0.96678 0.95981 0.95954 1.70014 1.21050 1.16771 1.42472 0.86233 0.78987 0.80611 0.79723 1.20841 1.19939 1.19951 1.21666 1.01804 0.80745 0.97421 1.21859 0.98582 0.99962 0.95631 0.92548 0.92551 0.92962 0.92044 0.91043 0.90646 0.95023 0.94072 0.90081 0.91298 0.90534 0.91818 0.89879 0.91125 0.91261 0.91231 0.92112 0.89005 0.89333 0.89355 0.92173 0.89442 0.91828 0.89613 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.42 16 2 C -0.12 -0.75 5.59 -26.73 -0.15 -0.90 16 3 C 0.05 0.33 5.03 -3.83 -0.02 0.31 16 4 N -0.51 -3.95 4.44 -222.57 -0.99 -4.94 16 5 C 0.04 0.25 5.10 -1.90 -0.01 0.25 16 6 C -0.12 -0.91 7.06 -24.87 -0.18 -1.09 16 7 C -0.13 -1.07 5.53 -25.37 -0.14 -1.21 16 8 C 0.07 0.59 2.23 -66.64 -0.15 0.44 16 9 H 0.05 0.41 7.58 -51.93 -0.39 0.02 16 10 C -0.07 -0.60 2.13 -90.58 -0.19 -0.79 16 11 C -0.13 -1.27 5.16 -26.61 -0.14 -1.41 16 12 C 0.12 1.43 6.44 -3.70 -0.02 1.41 16 13 N -0.62 -9.07 2.98 -173.03 -0.52 -9.58 16 14 C 0.53 10.48 7.72 -10.98 -0.08 10.39 16 15 O -0.52 -12.19 15.27 5.56 0.08 -12.11 16 16 C -0.15 -3.11 4.50 36.01 0.16 -2.95 16 17 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 18 C -0.53 -15.36 9.50 30.94 0.29 -15.07 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 22 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 C 0.11 1.24 6.31 -3.94 -0.02 1.22 16 27 C -0.12 -1.20 4.86 -26.84 -0.13 -1.33 16 28 H 0.06 0.27 8.14 -51.92 -0.42 -0.15 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.36 6.80 -51.93 -0.35 0.01 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.03 0.22 7.82 -51.93 -0.41 -0.18 16 35 H 0.04 0.28 8.00 -51.93 -0.42 -0.13 16 36 H 0.08 0.54 7.66 -51.93 -0.40 0.15 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.77 5.01 -51.92 -0.26 0.51 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.76 6.98 -51.93 -0.36 0.39 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.09 1.32 7.00 -51.93 -0.36 0.96 16 46 H 0.09 1.72 7.68 -51.92 -0.40 1.32 16 47 H 0.09 1.72 7.95 -51.91 -0.41 1.31 16 48 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 49 H 0.09 1.06 5.93 -51.93 -0.31 0.75 16 50 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 51 H 0.09 0.82 7.71 -51.93 -0.40 0.42 16 52 H 0.07 0.73 6.12 -51.93 -0.32 0.41 16 LS Contribution 405.99 15.07 6.12 6.12 Total: -1.00 -33.28 405.99 -11.72 -44.99 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -9.41 Total: -2.29 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -0.51 Total: -9.15 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: -0.77 Total: -40.17 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.08 Total: -12.11 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.28 -11.72 -44.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230513224.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.846 kcal (2) G-P(sol) polarization free energy of solvation -33.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds