Wall clock time and date at job start Sat Apr 11 2020 06:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47216 * 2 1 4 4 N 1.46893 * 109.46793 * 179.97438 * 3 2 1 5 5 C 1.48538 * 111.00224 * 52.60437 * 4 3 2 6 6 C 1.54936 * 103.22634 * 159.71799 * 5 4 3 7 7 C 1.54599 * 102.92246 * 322.58231 * 6 5 4 8 8 C 1.47905 * 110.99881 * 169.99939 * 4 3 2 9 9 H 1.09006 * 110.08246 * 333.59796 * 8 4 3 10 10 C 1.53004 * 109.92011 * 94.80070 * 8 4 3 11 11 C 1.53038 * 109.45899 * 184.04422 * 10 8 4 12 12 C 1.53200 * 109.30974 * 178.61310 * 11 10 8 13 13 N 1.46931 * 108.77009 * 54.63689 * 12 11 10 14 14 C 1.34781 * 120.62475 * 126.36855 * 13 12 11 15 15 O 1.21274 * 120.00344 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99423 * 179.97438 * 14 13 12 17 17 S 1.81001 * 109.46896 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99894 * 180.02562 * 17 16 14 19 19 H 1.07991 * 120.00323 * 359.97438 * 18 17 16 20 20 C 1.38805 * 119.99766 * 179.97438 * 18 17 16 21 21 N 1.31633 * 120.00034 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46807 * 179.97438 * 22 20 18 24 24 H 1.48497 * 109.46906 * 300.00462 * 22 20 18 25 25 H 1.48498 * 109.47018 * 60.00200 * 22 20 18 26 26 C 1.46919 * 118.74042 * 306.64083 * 13 12 11 27 27 C 1.52758 * 109.00854 * 53.31179 * 26 13 12 28 28 H 1.09008 * 109.47473 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47726 * 300.00530 * 1 2 3 30 30 H 1.09004 * 109.46829 * 60.00508 * 1 2 3 31 31 H 1.08998 * 109.47209 * 239.99453 * 2 1 3 32 32 H 1.09000 * 109.46436 * 119.99738 * 2 1 3 33 33 H 1.08994 * 109.46781 * 59.99455 * 3 2 1 34 34 H 1.09004 * 109.46807 * 299.99505 * 3 2 1 35 35 H 1.09001 * 110.66673 * 41.28706 * 5 4 3 36 36 H 1.08999 * 110.66750 * 278.15227 * 5 4 3 37 37 H 1.09007 * 110.72409 * 204.22927 * 6 5 4 38 38 H 1.08997 * 110.72822 * 80.94125 * 6 5 4 39 39 H 1.08999 * 110.31393 * 263.04207 * 7 6 5 40 40 H 1.09008 * 110.30573 * 140.87376 * 7 6 5 41 41 H 1.09002 * 109.44528 * 304.01674 * 10 8 4 42 42 H 1.09002 * 109.49850 * 58.66702 * 11 10 8 43 43 H 1.08993 * 109.53023 * 298.58150 * 11 10 8 44 44 H 1.08998 * 109.58347 * 294.85302 * 12 11 10 45 45 H 1.08994 * 109.58698 * 174.41952 * 12 11 10 46 46 H 1.09001 * 109.47454 * 60.00304 * 16 14 13 47 47 H 1.09003 * 109.47322 * 299.99933 * 16 14 13 48 48 H 0.97001 * 119.99662 * 179.97438 * 21 20 18 49 49 H 1.08999 * 109.58607 * 173.14348 * 26 13 12 50 50 H 1.08999 * 109.59062 * 293.56904 * 26 13 12 51 51 H 1.09000 * 109.56738 * 185.54982 * 27 26 13 52 52 H 1.09005 * 109.36353 * 65.50133 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 0.0006 5 6 4.0417 0.6000 -1.1007 6 6 5.4896 1.1222 -1.2778 7 6 5.3387 2.6439 -1.0501 8 6 4.0392 2.8021 -0.2392 9 1 3.3175 3.3908 -0.8056 10 6 4.3379 3.4881 1.0955 11 6 4.7897 4.9275 0.8391 12 6 5.0545 5.6217 2.1789 13 7 6.0133 4.8160 2.9474 14 6 7.1411 5.3705 3.4344 15 8 7.3726 6.5449 3.2394 16 6 8.1143 4.5311 4.2213 17 16 9.5162 5.5545 4.7345 18 6 10.4670 4.3553 5.6077 19 1 10.1118 3.3387 5.6880 20 6 11.6728 4.7173 6.1922 21 7 12.1057 5.9566 6.0947 22 14 12.6806 3.4461 7.1185 23 1 13.9162 4.0808 7.6434 24 1 11.8811 2.9083 8.2485 25 1 13.0458 2.3385 6.1993 26 6 5.7221 3.3932 3.1697 27 6 5.4471 2.7254 1.8236 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 3.4646 0.7496 -2.0132 36 1 4.0444 -0.4516 -0.8140 37 1 5.8532 0.9171 -2.2848 38 1 6.1517 0.6843 -0.5309 39 1 5.2544 3.1628 -2.0049 40 1 6.1872 3.0276 -0.4836 41 1 3.4376 3.4939 1.7100 42 1 4.0086 5.4635 0.2999 43 1 5.7036 4.9222 0.2452 44 1 4.1216 5.7091 2.7357 45 1 5.4706 6.6132 2.0007 46 1 8.4717 3.7102 3.5995 47 1 7.6165 4.1285 5.1035 48 1 12.9481 6.2096 6.5036 49 1 6.5785 2.9150 3.6450 50 1 4.8448 3.2953 3.8091 51 1 5.1339 1.6940 1.9850 52 1 6.3550 2.7402 1.2206 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230513224.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:50 Heat of formation + Delta-G solvation = -66.425771 kcal Electronic energy + Delta-G solvation = -28118.923657 eV Core-core repulsion = 24435.833832 eV Total energy + Delta-G solvation = -3683.089825 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.43114 -40.34050 -38.09148 -35.58497 -34.58099 -34.11399 -32.39504 -31.67981 -30.70584 -29.12708 -27.65999 -26.40849 -25.37241 -24.23270 -22.97927 -22.64432 -21.09031 -20.85944 -19.91107 -19.24756 -18.09847 -17.10877 -16.89276 -16.86063 -16.72420 -16.55275 -16.06971 -15.84135 -15.37748 -15.08368 -14.77506 -14.56948 -14.48740 -14.31912 -14.18324 -13.85854 -13.71541 -13.54475 -13.40480 -13.18374 -13.14810 -12.86306 -12.68231 -12.60871 -12.51544 -12.25382 -12.15392 -12.01648 -11.91017 -11.72456 -11.69345 -11.54760 -11.41138 -11.25828 -11.12432 -11.05944 -10.78662 -10.26287 -9.64619 -9.29271 -8.67131 -8.33851 -6.12468 1.26202 1.44357 1.46198 1.56171 1.59000 2.14308 2.28232 2.97558 2.99875 3.26326 3.61184 3.65404 3.76296 3.90303 4.01539 4.08023 4.09433 4.17062 4.21706 4.25090 4.27761 4.33205 4.41589 4.44774 4.48012 4.52381 4.57341 4.66116 4.69142 4.79215 4.84608 4.86233 4.90468 4.93897 4.96433 5.02233 5.08151 5.10325 5.13857 5.21633 5.22362 5.30066 5.32480 5.35549 5.41783 5.43644 5.57425 5.65690 6.03510 6.20071 6.20592 6.32805 7.06877 7.16535 8.75122 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016687 B = 0.002277 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.566197 B =12295.358447 C =12926.429900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C 0.049 3.951 4 N -0.517 5.517 5 C 0.039 3.961 6 C -0.123 4.123 7 C -0.133 4.133 8 C 0.078 3.922 9 H 0.055 0.945 10 C -0.061 4.061 11 C -0.121 4.121 12 C 0.110 3.890 13 N -0.604 5.604 14 C 0.532 3.468 15 O -0.569 6.569 16 C -0.122 4.122 17 S -0.152 6.152 18 C -0.546 4.546 19 H 0.082 0.918 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.279 1.279 24 H -0.262 1.262 25 H -0.262 1.262 26 C 0.100 3.900 27 C -0.112 4.112 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.032 0.968 35 H 0.045 0.955 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.056 0.944 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.104 0.896 47 H 0.105 0.895 48 H 0.271 0.729 49 H 0.083 0.917 50 H 0.085 0.915 51 H 0.095 0.905 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.466 -14.896 -16.045 32.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.079 4.079 4 N -0.241 5.241 5 C -0.088 4.088 6 C -0.161 4.161 7 C -0.171 4.171 8 C -0.030 4.030 9 H 0.073 0.927 10 C -0.080 4.080 11 C -0.159 4.159 12 C -0.012 4.012 13 N -0.338 5.338 14 C 0.319 3.681 15 O -0.448 6.448 16 C -0.273 4.273 17 S 0.075 5.925 18 C -0.694 4.694 19 H 0.100 0.900 20 C -0.192 4.192 21 N -0.547 5.547 22 Si 0.820 3.180 23 H -0.204 1.204 24 H -0.186 1.186 25 H -0.186 1.186 26 C -0.021 4.021 27 C -0.150 4.150 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.109 0.891 43 H 0.075 0.925 44 H 0.101 0.899 45 H 0.086 0.914 46 H 0.123 0.877 47 H 0.123 0.877 48 H 0.080 0.920 49 H 0.102 0.898 50 H 0.103 0.897 51 H 0.113 0.887 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.878 -13.248 -15.790 31.544 hybrid contribution 0.345 -1.132 0.020 1.184 sum -23.534 -14.381 -15.770 31.770 Atomic orbital electron populations 1.21723 0.95007 1.02108 1.01915 1.21541 0.96097 0.95769 1.02355 1.22339 0.87173 0.97630 1.00744 1.64674 1.07960 1.07963 1.43544 1.23195 0.94596 0.98460 0.92548 1.22483 0.96758 0.94840 1.02049 1.22561 0.97656 0.97151 0.99773 1.22326 0.95782 0.89903 0.95021 0.92695 1.20952 0.98420 0.92716 0.95873 1.21927 1.01993 0.96216 0.95792 1.21669 0.92016 0.94932 0.92543 1.48131 1.20094 1.11821 1.53802 1.20115 0.81892 0.87164 0.78892 1.90661 1.76050 1.18321 1.59817 1.23357 0.98840 1.02374 1.02756 1.85568 1.19237 1.17981 1.69695 1.23152 1.08754 0.97738 1.39707 0.89966 1.26149 0.97944 0.98336 0.96784 1.70184 1.21666 1.19228 1.43656 0.85000 0.77016 0.77560 0.78399 1.20364 1.18606 1.18608 1.21946 1.02540 0.78672 0.98989 1.21770 0.98578 1.00304 0.94388 0.92153 0.92556 0.92729 0.91902 0.91717 0.90768 0.94935 0.93634 0.89674 0.90479 0.91302 0.91396 0.91336 0.90362 0.89067 0.92538 0.89912 0.91421 0.87732 0.87669 0.91997 0.89839 0.89654 0.88701 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 71.98 0.71 -0.55 16 2 C -0.12 -1.19 5.59 30.59 0.17 -1.02 16 3 C 0.05 0.56 5.03 86.30 0.43 0.99 16 4 N -0.52 -6.77 4.44 -858.08 -3.81 -10.58 16 5 C 0.04 0.47 5.10 86.65 0.44 0.91 16 6 C -0.12 -1.61 7.06 31.80 0.22 -1.38 16 7 C -0.13 -1.94 5.53 31.47 0.17 -1.77 16 8 C 0.08 1.07 2.23 45.06 0.10 1.17 16 9 H 0.06 0.74 7.58 -2.38 -0.02 0.72 16 10 C -0.06 -0.92 2.13 -10.77 -0.02 -0.94 16 11 C -0.12 -2.14 5.16 30.67 0.16 -1.98 16 12 C 0.11 2.62 6.44 86.36 0.56 3.18 16 13 N -0.60 -17.15 2.98 -819.75 -2.44 -19.59 16 14 C 0.53 21.05 7.72 87.66 0.68 21.73 16 15 O -0.57 -27.71 15.27 -3.01 -0.05 -27.75 16 16 C -0.12 -5.10 4.50 71.24 0.32 -4.78 16 17 S -0.15 -8.67 20.57 -56.49 -1.16 -9.83 16 18 C -0.55 -31.64 9.50 67.96 0.65 -30.99 16 19 H 0.08 4.41 7.80 -2.92 -0.02 4.39 16 20 C 0.01 0.73 5.49 84.86 0.47 1.19 16 21 N -0.91 -56.61 13.22 21.65 0.29 -56.32 16 22 Si 1.00 43.97 29.55 68.60 2.03 45.99 16 23 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 25 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 26 C 0.10 2.12 6.31 86.22 0.54 2.67 16 27 C -0.11 -1.98 4.86 30.53 0.15 -1.83 16 28 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 31 H 0.06 0.61 6.80 -2.39 -0.02 0.59 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.03 0.37 7.82 -2.38 -0.02 0.35 16 35 H 0.05 0.51 8.00 -2.39 -0.02 0.49 16 36 H 0.08 0.96 7.66 -2.39 -0.02 0.94 16 37 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.07 1.21 5.01 -2.38 -0.01 1.20 16 41 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.06 1.18 6.98 -2.39 -0.02 1.16 16 44 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.07 1.98 7.00 -2.39 -0.02 1.96 16 46 H 0.10 4.00 7.68 -2.39 -0.02 3.98 16 47 H 0.11 4.01 7.95 -2.39 -0.02 3.99 16 48 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 49 H 0.08 1.85 5.93 -2.39 -0.01 1.84 16 50 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 51 H 0.09 1.57 7.71 -2.39 -0.02 1.55 16 52 H 0.06 1.14 6.12 -2.38 -0.01 1.13 16 Total: -1.00 -74.30 405.99 1.48 -72.82 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.87 Total: 18.67 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: 5.75 Total: -13.41 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -5.97 Total: -86.49 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.05 Total: -27.75 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.83 kcal Total: -74.30 1.48 -72.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230513224.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.397 kcal (2) G-P(sol) polarization free energy of solvation -74.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds