Wall clock time and date at job start Sat Apr 11 2020 06:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46942 * 2 1 4 4 N 1.46901 * 109.47145 * 180.02562 * 3 2 1 5 5 C 1.46345 * 110.99790 * 43.01613 * 4 3 2 6 6 C 1.53148 * 108.98684 * 184.84098 * 5 4 3 7 7 C 1.52731 * 108.68280 * 292.75025 * 6 5 4 8 8 C 1.51667 * 111.06548 * 54.59340 * 7 6 5 9 9 H 1.09006 * 111.28616 * 192.95974 * 8 7 6 10 10 C 1.53505 * 114.25227 * 64.47761 * 8 7 6 11 11 H 1.08997 * 113.69890 * 329.91970 * 10 8 7 12 12 N 1.46502 * 113.69734 * 100.98751 * 10 8 7 13 13 C 1.34776 * 119.99975 * 255.49169 * 12 10 8 14 14 O 1.21278 * 119.99992 * 0.02562 * 13 12 10 15 15 C 1.50703 * 119.99821 * 180.02562 * 13 12 10 16 16 S 1.80998 * 109.46970 * 180.02562 * 15 13 12 17 17 C 1.76199 * 100.00052 * 179.97438 * 16 15 13 18 18 H 1.07990 * 119.99886 * 359.97438 * 17 16 15 19 19 C 1.38798 * 119.99752 * 180.02562 * 17 16 15 20 20 N 1.31633 * 120.00370 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99801 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46845 * 269.99984 * 21 19 17 23 23 H 1.48503 * 109.47399 * 29.99474 * 21 19 17 24 24 H 1.48498 * 109.47295 * 150.00081 * 21 19 17 25 25 C 1.53875 * 86.57089 * 215.40471 * 10 8 7 26 26 C 1.52997 * 113.65062 * 139.97699 * 25 10 8 27 27 C 1.53001 * 113.65218 * 270.99771 * 25 10 8 28 28 C 1.45791 * 110.99960 * 169.99990 * 4 3 2 29 29 H 1.09001 * 112.38204 * 327.91079 * 28 4 3 30 30 H 1.08997 * 109.47340 * 300.00175 * 1 2 3 31 31 H 1.08997 * 109.47227 * 60.00200 * 1 2 3 32 32 H 1.09000 * 109.46942 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.46995 * 240.00181 * 2 1 3 34 34 H 1.08997 * 109.46891 * 120.00228 * 2 1 3 35 35 H 1.08997 * 109.47246 * 59.99767 * 3 2 1 36 36 H 1.08997 * 109.46996 * 299.99941 * 3 2 1 37 37 H 1.08998 * 109.55911 * 304.69280 * 5 4 3 38 38 H 1.09000 * 109.55147 * 64.89071 * 5 4 3 39 39 H 1.09009 * 109.59886 * 52.50408 * 6 5 4 40 40 H 1.09002 * 109.60646 * 172.82540 * 6 5 4 41 41 H 1.08993 * 109.15568 * 294.18258 * 7 6 5 42 42 H 1.09002 * 109.15421 * 174.99932 * 7 6 5 43 43 H 0.97006 * 119.99942 * 75.49267 * 12 10 8 44 44 H 1.08993 * 109.47027 * 60.00415 * 15 13 12 45 45 H 1.09001 * 109.47164 * 300.00041 * 15 13 12 46 46 H 0.97000 * 119.99520 * 359.97438 * 20 19 17 47 47 H 1.09001 * 109.47093 * 79.50851 * 26 25 10 48 48 H 1.08999 * 109.47231 * 199.50179 * 26 25 10 49 49 H 1.08993 * 109.47386 * 319.50576 * 26 25 10 50 50 H 1.08997 * 109.47335 * 40.49031 * 27 25 10 51 51 H 1.08997 * 109.47241 * 160.49720 * 27 25 10 52 52 H 1.09005 * 109.47094 * 280.49590 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0330 0.4438 -0.9331 6 6 5.5588 0.3984 -0.8090 7 6 6.1308 1.7186 -1.3212 8 6 5.5033 2.8991 -0.6049 9 1 5.7312 3.8365 -1.1122 10 6 5.8101 2.9604 0.8980 11 1 5.9596 1.9821 1.3548 12 7 6.8620 3.9190 1.2455 13 6 8.0963 3.4797 1.5616 14 8 8.3364 2.2910 1.5578 15 6 9.1783 4.4658 1.9197 16 16 10.7089 3.5738 2.2903 17 6 11.7704 4.9297 2.6639 18 1 11.3920 5.9401 2.6185 19 6 13.0932 4.6990 3.0155 20 7 13.5545 3.4674 3.0704 21 14 14.2183 6.1364 3.4123 22 1 14.8886 6.5978 2.1701 23 1 13.4178 7.2483 3.9850 24 1 15.2430 5.7058 4.3970 25 6 4.3855 3.5154 1.0721 26 6 3.6579 2.9641 2.2999 27 6 4.3031 5.0394 0.9644 28 6 4.0313 2.7830 -0.2370 29 1 3.3826 3.3731 -0.8844 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8899 35 1 1.6766 1.9563 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 3.6182 -0.5346 -0.6909 38 1 3.7564 0.7152 -1.9518 39 1 5.8367 0.2604 0.2360 40 1 5.9497 -0.4274 -1.4034 41 1 5.9342 1.8029 -2.3899 42 1 7.2080 1.7304 -1.1544 43 1 6.6701 4.8699 1.2482 44 1 8.8714 5.0403 2.7936 45 1 9.3459 5.1417 1.0811 46 1 12.9699 2.7210 2.8654 47 1 3.9995 3.4902 3.1913 48 1 2.5841 3.1094 2.1816 49 1 3.8716 1.9002 2.4017 50 1 4.9543 5.3826 0.1606 51 1 3.2756 5.3334 0.7503 52 1 4.6207 5.4879 1.9058 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264587273.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:03 Heat of formation + Delta-G solvation = -52.366588 kcal Electronic energy + Delta-G solvation = -28709.234273 eV Core-core repulsion = 25026.754100 eV Total energy + Delta-G solvation = -3682.480173 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.46684 -40.21914 -37.83875 -35.54866 -34.76204 -34.59241 -32.84307 -31.13318 -30.76273 -28.41274 -27.51569 -27.13112 -26.20202 -24.23052 -23.87844 -21.75863 -21.57734 -20.50216 -20.33225 -19.19766 -17.95397 -17.77893 -16.87962 -16.54853 -16.41169 -16.23523 -15.74826 -15.67777 -15.64694 -15.20692 -14.93886 -14.81396 -14.53030 -14.47766 -14.04915 -13.94501 -13.85725 -13.70604 -13.48819 -13.26288 -13.06153 -12.85494 -12.75264 -12.60732 -12.40572 -12.13819 -12.06825 -11.97804 -11.94624 -11.74515 -11.68219 -11.58283 -11.33913 -11.15326 -11.10903 -10.93829 -10.84635 -10.32288 -9.88478 -9.08055 -8.93123 -8.86790 -6.27804 1.21268 1.51349 1.54300 1.60932 1.79247 2.25033 2.35365 2.78784 3.01846 3.14197 3.35315 3.41272 3.63678 3.82072 3.87921 4.02436 4.04851 4.11434 4.16479 4.18229 4.28623 4.35783 4.36807 4.41574 4.50014 4.54439 4.58944 4.64847 4.76304 4.78823 4.80096 4.85703 4.89672 4.94406 5.01045 5.04929 5.07489 5.12885 5.14826 5.21612 5.26980 5.31342 5.35078 5.41879 5.43069 5.53978 5.62711 5.64005 6.14376 6.23261 6.29803 6.48667 7.05932 7.21183 8.50321 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.025339 B = 0.002315 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.735658 B =12092.752557 C =12575.008034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 C 0.063 3.937 4 N -0.537 5.537 5 C 0.066 3.934 6 C -0.116 4.116 7 C -0.108 4.108 8 C -0.114 4.114 9 H 0.101 0.899 10 C 0.136 3.864 11 H 0.086 0.914 12 N -0.701 5.701 13 C 0.532 3.468 14 O -0.562 6.562 15 C -0.110 4.110 16 S -0.194 6.194 17 C -0.613 4.613 18 H 0.074 0.926 19 C -0.021 4.021 20 N -0.913 5.913 21 Si 1.139 2.861 22 H -0.267 1.267 23 H -0.262 1.262 24 H -0.279 1.279 25 C -0.073 4.073 26 C -0.119 4.119 27 C -0.135 4.135 28 C 0.094 3.906 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.037 0.963 37 H 0.091 0.909 38 H 0.038 0.962 39 H 0.048 0.952 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.036 0.964 43 H 0.413 0.587 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.260 0.740 47 H 0.043 0.957 48 H 0.068 0.932 49 H 0.053 0.947 50 H 0.064 0.936 51 H 0.079 0.921 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.326 1.185 -9.413 31.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.165 4.165 3 C -0.064 4.064 4 N -0.261 5.261 5 C -0.061 4.061 6 C -0.154 4.154 7 C -0.146 4.146 8 C -0.134 4.134 9 H 0.119 0.881 10 C 0.031 3.969 11 H 0.104 0.896 12 N -0.354 5.354 13 C 0.318 3.682 14 O -0.441 6.441 15 C -0.262 4.262 16 S 0.032 5.968 17 C -0.761 4.761 18 H 0.093 0.907 19 C -0.224 4.224 20 N -0.549 5.549 21 Si 0.957 3.043 22 H -0.193 1.193 23 H -0.187 1.187 24 H -0.204 1.204 25 C -0.075 4.075 26 C -0.176 4.176 27 C -0.193 4.193 28 C -0.016 4.016 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.055 0.945 37 H 0.109 0.891 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.055 0.945 43 H 0.251 0.749 44 H 0.127 0.873 45 H 0.128 0.872 46 H 0.071 0.929 47 H 0.062 0.938 48 H 0.087 0.913 49 H 0.072 0.928 50 H 0.083 0.917 51 H 0.098 0.902 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -28.285 -0.541 -8.538 29.551 hybrid contribution -1.520 1.189 -1.093 2.218 sum -29.805 0.648 -9.632 31.329 Atomic orbital electron populations 1.21703 0.94637 1.02126 1.02071 1.21686 0.96445 0.95997 1.02356 1.22257 0.85346 0.97612 1.01191 1.60618 1.08052 1.04938 1.52520 1.21993 0.93914 0.96377 0.93835 1.21522 0.95797 0.97098 1.01011 1.21001 0.98900 0.94810 0.99867 1.22561 0.95357 0.99637 0.95883 0.88117 1.22722 0.85847 0.92996 0.95298 0.89604 1.45831 1.08824 1.11277 1.69506 1.20027 0.83776 0.88546 0.75864 1.90684 1.81836 1.18576 1.52954 1.23239 0.95837 1.01246 1.05839 1.85058 1.05740 1.15731 1.90222 1.24058 1.00421 0.93979 1.57600 0.90732 1.27858 0.98038 1.03891 0.92576 1.70890 1.39155 0.99677 1.45137 0.82683 0.73529 0.70475 0.77606 1.19258 1.18661 1.20422 1.22390 0.92653 0.96274 0.96166 1.21521 1.00042 1.00737 0.95287 1.21653 1.03548 0.91452 1.02618 1.21949 0.94003 0.89694 0.95930 0.91037 0.92424 0.92472 0.92239 0.91553 0.91929 0.90211 0.94483 0.89118 0.94384 0.93328 0.90873 0.91099 0.94487 0.74877 0.87302 0.87249 0.92875 0.93772 0.91265 0.92831 0.91675 0.90180 0.91456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 71.98 0.71 -0.60 16 2 C -0.13 -1.43 5.05 30.60 0.15 -1.27 16 3 C 0.06 0.78 5.02 86.30 0.43 1.21 16 4 N -0.54 -8.77 3.31 -874.29 -2.89 -11.66 16 5 C 0.07 1.10 4.71 86.46 0.41 1.51 16 6 C -0.12 -2.56 5.89 30.55 0.18 -2.38 16 7 C -0.11 -2.53 5.67 30.07 0.17 -2.36 16 8 C -0.11 -2.35 3.38 -11.34 -0.04 -2.39 16 9 H 0.10 1.88 7.46 -2.38 -0.02 1.86 16 10 C 0.14 3.32 3.03 45.46 0.14 3.46 16 11 H 0.09 2.77 6.18 -2.39 -0.01 2.75 16 12 N -0.70 -18.63 5.27 -440.33 -2.32 -20.95 16 13 C 0.53 20.20 7.85 87.66 0.69 20.89 16 14 O -0.56 -26.59 15.51 -3.02 -0.05 -26.64 16 15 C -0.11 -4.48 6.16 71.24 0.44 -4.04 16 16 S -0.19 -10.90 19.60 -56.49 -1.11 -12.00 16 17 C -0.61 -35.84 9.50 67.95 0.65 -35.19 16 18 H 0.07 4.09 7.80 -2.92 -0.02 4.06 16 19 C -0.02 -1.21 5.49 84.86 0.47 -0.75 16 20 N -0.91 -58.75 13.67 21.65 0.30 -58.46 16 21 Si 1.14 49.89 29.92 68.60 2.05 51.94 16 22 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 23 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 24 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 25 C -0.07 -1.24 1.36 -51.51 -0.07 -1.31 16 26 C -0.12 -2.07 8.06 71.98 0.58 -1.49 16 27 C -0.14 -1.66 7.76 71.98 0.56 -1.10 16 28 C 0.09 1.54 3.02 45.23 0.14 1.67 16 29 H 0.07 1.00 7.68 -2.39 -0.02 0.98 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.07 0.73 6.26 -2.39 -0.01 0.72 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.08 0.96 6.33 -2.39 -0.02 0.95 16 36 H 0.04 0.43 7.86 -2.39 -0.02 0.41 16 37 H 0.09 1.36 5.90 -2.39 -0.01 1.34 16 38 H 0.04 0.59 8.13 -2.39 -0.02 0.57 16 39 H 0.05 1.35 7.02 -2.38 -0.02 1.33 16 40 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 41 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.41 8.24 6.83 -92.70 -0.63 7.60 16 44 H 0.11 4.03 8.14 -2.40 -0.02 4.01 16 45 H 0.11 4.03 8.14 -2.40 -0.02 4.01 16 46 H 0.26 17.45 7.12 -92.71 -0.66 16.79 16 47 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.07 0.96 6.73 -2.39 -0.02 0.94 16 49 H 0.05 1.14 7.48 -2.39 -0.02 1.12 16 50 H 0.06 0.74 6.72 -2.39 -0.02 0.72 16 51 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 52 H 0.07 0.82 8.04 -2.38 -0.02 0.80 16 Total: -1.00 -76.41 403.55 1.96 -74.45 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: 0.37 Total: 27.46 kcal Atomic # 6 Polarization: -29.74 SS G_CDS: 5.60 Total: -24.13 kcal Atomic # 7 Polarization: -86.16 SS G_CDS: -4.92 Total: -91.07 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.05 Total: -26.64 kcal Atomic # 14 Polarization: 49.89 SS G_CDS: 2.05 Total: 51.94 kcal Atomic # 16 Polarization: -10.90 SS G_CDS: -1.11 Total: -12.00 kcal Total: -76.41 1.96 -74.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264587273.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.082 kcal (2) G-P(sol) polarization free energy of solvation -76.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds