Wall clock time and date at job start Sat Apr 11 2020 06:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46898 * 109.47006 * 179.97438 * 3 2 1 5 5 C 1.46813 * 111.00246 * 66.04550 * 4 3 2 6 6 C 1.52638 * 108.93295 * 189.19512 * 5 4 3 7 7 C 1.51831 * 110.79976 * 297.11458 * 6 5 4 8 8 C 1.50810 * 113.74042 * 44.72802 * 7 6 5 9 9 H 1.08999 * 111.42073 * 199.87831 * 8 7 6 10 10 C 1.46818 * 110.99919 * 189.96717 * 4 3 2 11 11 H 1.08999 * 113.08755 * 319.37497 * 10 4 3 12 12 C 1.54322 * 111.33634 * 90.38237 * 10 4 3 13 13 C 1.53003 * 113.65596 * 334.14790 * 12 10 4 14 14 C 1.52994 * 113.73993 * 203.11614 * 12 10 4 15 15 C 1.53292 * 115.36232 * 71.21821 * 8 7 6 16 16 H 1.08996 * 113.73497 * 99.33840 * 15 8 7 17 17 N 1.46502 * 113.72756 * 328.06781 * 15 8 7 18 18 C 1.34778 * 120.00215 * 104.50332 * 17 15 8 19 19 O 1.21281 * 119.99842 * 0.02562 * 18 17 15 20 20 C 1.50692 * 120.00087 * 179.97438 * 18 17 15 21 21 S 1.81002 * 109.47115 * 180.02562 * 20 18 17 22 22 C 1.76205 * 100.00130 * 180.02562 * 21 20 18 23 23 H 1.08001 * 119.99718 * 359.97438 * 22 21 20 24 24 C 1.38793 * 119.99808 * 180.02562 * 22 21 20 25 25 N 1.31626 * 120.00433 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99751 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47244 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47482 * 119.99515 * 26 24 22 29 29 H 1.48497 * 109.46996 * 239.99586 * 26 24 22 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 33 33 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 34 34 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 35 35 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 36 36 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 37 37 H 1.09000 * 109.55490 * 309.03068 * 5 4 3 38 38 H 1.08997 * 109.56157 * 69.24479 * 5 4 3 39 39 H 1.08998 * 109.21244 * 57.45688 * 6 5 4 40 40 H 1.09004 * 109.20986 * 176.78326 * 6 5 4 41 41 H 1.08994 * 108.63115 * 165.82821 * 7 6 5 42 42 H 1.09002 * 108.62882 * 283.76768 * 7 6 5 43 43 H 1.09000 * 109.46770 * 176.70987 * 13 12 10 44 44 H 1.08992 * 109.47291 * 296.71190 * 13 12 10 45 45 H 1.09000 * 109.46967 * 56.71821 * 13 12 10 46 46 H 1.08998 * 109.47582 * 303.24229 * 14 12 10 47 47 H 1.08999 * 109.47520 * 63.24949 * 14 12 10 48 48 H 1.09000 * 109.47020 * 183.24462 * 14 12 10 49 49 H 0.97003 * 119.99873 * 284.50355 * 17 15 8 50 50 H 1.08994 * 109.47506 * 300.00306 * 20 18 17 51 51 H 1.09007 * 109.47230 * 60.00335 * 20 18 17 52 52 H 0.97005 * 120.00600 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0357 0.8859 -1.2516 6 6 5.5437 0.6947 -1.1130 7 6 6.2389 2.0277 -0.9008 8 6 5.5499 2.9190 0.1018 9 1 5.8482 3.9603 -0.0201 10 6 4.0350 2.7925 0.2379 11 1 3.4780 3.5671 -0.2892 12 6 4.2446 3.0569 1.7438 13 6 3.3391 2.2164 2.6464 14 6 4.2421 4.5411 2.1148 15 6 5.6552 2.4677 1.5630 16 1 6.4252 2.9912 2.1294 17 7 5.7122 1.0131 1.7280 18 6 6.8826 0.4138 2.0239 19 8 7.8885 1.0788 2.1539 20 6 6.9412 -1.0823 2.1942 21 16 8.6374 -1.5792 2.5843 22 6 8.4209 -3.3222 2.7253 23 1 7.4442 -3.7587 2.5775 24 6 9.5054 -4.1339 3.0275 25 7 10.6957 -3.6019 3.2082 26 14 9.2760 -5.9818 3.1763 27 1 7.8527 -6.3255 2.9288 28 1 10.1326 -6.6691 2.1767 29 1 9.6602 -6.4199 4.5421 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 3.5627 -0.0757 -1.4508 38 1 3.8271 1.5721 -2.0723 39 1 5.7461 0.0450 -0.2615 40 1 5.9309 0.2285 -2.0190 41 1 7.2562 1.8392 -0.5579 42 1 6.2857 2.5518 -1.8554 43 1 3.5833 2.4132 3.6903 44 1 2.2975 2.4782 2.4612 45 1 3.4919 1.1589 2.4308 46 1 5.0073 5.0611 1.5386 47 1 3.2651 4.9699 1.8915 48 1 4.4519 4.6500 3.1789 49 1 4.9076 0.4813 1.6244 50 1 6.2793 -1.3817 3.0068 51 1 6.6239 -1.5659 1.2702 52 1 11.4537 -4.1693 3.4190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264587275.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:09 Heat of formation + Delta-G solvation = -15.945181 kcal Electronic energy + Delta-G solvation = -29605.458218 eV Core-core repulsion = 25924.557395 eV Total energy + Delta-G solvation = -3680.900823 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.67770 -38.45136 -36.73199 -34.79520 -33.15956 -32.38438 -32.13495 -30.27203 -29.04629 -27.60995 -26.70981 -25.55432 -25.17167 -23.43141 -22.68714 -21.16348 -20.01969 -19.35310 -18.52567 -17.61001 -16.58666 -15.98170 -15.86113 -15.73843 -15.09901 -14.76757 -14.76304 -14.62952 -14.23461 -14.02693 -13.85467 -13.62884 -13.40608 -13.28338 -12.91602 -12.83515 -12.64594 -12.43880 -12.32263 -12.09950 -11.93996 -11.83518 -11.48355 -11.34300 -11.28996 -11.06315 -11.04355 -10.97136 -10.92044 -10.74011 -10.61890 -10.53125 -10.05761 -9.91034 -9.73840 -9.24264 -9.03249 -8.59137 -8.34296 -8.15898 -6.43588 -6.17505 -3.86861 3.12907 3.23187 3.24696 3.31424 3.36831 3.55092 3.87203 4.24081 4.24881 4.34937 4.61179 4.65933 4.77751 4.85781 4.95448 5.00457 5.07437 5.11202 5.17683 5.18835 5.22088 5.28807 5.30476 5.41646 5.43848 5.47225 5.50532 5.56809 5.62453 5.66967 5.70855 5.74163 5.79060 5.85940 5.88102 5.93359 5.94816 5.98623 6.02915 6.04424 6.10066 6.17962 6.23649 6.33899 6.37827 6.44637 6.89281 6.93186 7.02537 7.64261 8.03958 8.39911 8.83076 9.28101 10.89912 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012972 B = 0.003234 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.018668 B = 8656.514951 C = 9631.017228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.052 3.948 4 N -0.518 5.518 5 C 0.056 3.944 6 C -0.118 4.118 7 C -0.101 4.101 8 C -0.115 4.115 9 H 0.092 0.908 10 C 0.071 3.929 11 H 0.055 0.945 12 C -0.086 4.086 13 C -0.127 4.127 14 C -0.126 4.126 15 C 0.150 3.850 16 H 0.095 0.905 17 N -0.703 5.703 18 C 0.531 3.469 19 O -0.523 6.523 20 C -0.151 4.151 21 S -0.060 6.060 22 C -0.533 4.533 23 H 0.072 0.928 24 C 0.073 3.927 25 N -0.868 5.868 26 Si 0.917 3.083 27 H -0.272 1.272 28 H -0.280 1.280 29 H -0.280 1.280 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.029 0.971 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.030 0.970 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.051 0.949 44 H 0.051 0.949 45 H 0.070 0.930 46 H 0.059 0.941 47 H 0.058 0.942 48 H 0.063 0.937 49 H 0.408 0.592 50 H 0.087 0.913 51 H 0.087 0.913 52 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.011 13.866 -8.003 26.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.076 4.076 4 N -0.242 5.242 5 C -0.071 4.071 6 C -0.156 4.156 7 C -0.139 4.139 8 C -0.135 4.135 9 H 0.110 0.890 10 C -0.038 4.038 11 H 0.072 0.928 12 C -0.088 4.088 13 C -0.185 4.185 14 C -0.184 4.184 15 C 0.043 3.957 16 H 0.113 0.887 17 N -0.359 5.359 18 C 0.317 3.683 19 O -0.398 6.398 20 C -0.302 4.302 21 S 0.167 5.833 22 C -0.682 4.682 23 H 0.090 0.910 24 C -0.136 4.136 25 N -0.503 5.503 26 Si 0.743 3.257 27 H -0.196 1.196 28 H -0.206 1.206 29 H -0.206 1.206 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.048 0.952 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.049 0.951 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.089 0.911 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.082 0.918 49 H 0.247 0.753 50 H 0.105 0.895 51 H 0.105 0.895 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.985 14.616 -7.363 25.065 hybrid contribution -1.962 -1.630 -0.897 2.704 sum -20.947 12.986 -8.260 25.993 Atomic orbital electron populations 1.21727 0.95741 1.01795 1.01567 1.21563 0.95269 0.96340 1.02931 1.22299 0.86997 0.97317 1.00957 1.61860 1.07091 1.20457 1.34826 1.22015 0.96085 0.99388 0.89654 1.21340 0.93625 0.97994 1.02660 1.20497 1.00301 0.95322 0.97742 1.22324 0.94051 1.00151 0.97022 0.88998 1.22721 0.95463 0.89483 0.96088 0.92756 1.22352 0.96134 0.95776 0.94521 1.21629 0.97942 1.00693 0.98219 1.21559 1.01791 0.93145 1.01930 1.21627 0.96525 0.82410 0.95118 0.88676 1.45802 1.11400 1.06404 1.72275 1.20253 0.82908 0.89680 0.75439 1.90682 1.34235 1.65739 1.49158 1.23523 1.08003 0.94034 1.04652 1.85376 1.00441 1.05968 1.91534 1.22921 0.97836 0.91969 1.55446 0.90959 1.24976 0.94472 0.99427 0.94697 1.70030 0.99545 1.35739 1.45033 0.86143 0.78343 0.83256 0.77911 1.19631 1.20616 1.20612 0.92512 0.93075 0.92721 0.90931 0.91885 0.95235 0.90170 0.90386 0.95135 0.90396 0.91792 0.91011 0.93153 0.92989 0.92975 0.91098 0.92207 0.92337 0.91839 0.75281 0.89514 0.89511 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16 2 C -0.12 -0.90 5.88 -26.73 -0.16 -1.06 16 3 C 0.05 0.39 4.45 -3.82 -0.02 0.38 16 4 N -0.52 -4.62 1.80 -226.42 -0.41 -5.03 16 5 C 0.06 0.53 5.30 -4.06 -0.02 0.51 16 6 C -0.12 -1.36 5.54 -27.51 -0.15 -1.52 16 7 C -0.10 -1.21 5.33 -28.42 -0.15 -1.36 16 8 C -0.12 -1.25 3.47 -91.80 -0.32 -1.57 16 9 H 0.09 0.91 7.25 -51.93 -0.38 0.53 16 10 C 0.07 0.66 3.04 -67.26 -0.20 0.45 16 11 H 0.05 0.49 8.07 -51.93 -0.42 0.07 16 12 C -0.09 -0.81 1.35 -153.37 -0.21 -1.01 16 13 C -0.13 -1.17 7.59 37.16 0.28 -0.89 16 14 C -0.13 -1.00 9.10 37.15 0.34 -0.66 16 15 C 0.15 1.86 3.59 -67.29 -0.24 1.62 16 16 H 0.10 1.38 7.52 -51.93 -0.39 0.99 16 17 N -0.70 -9.86 2.39 -53.19 -0.13 -9.99 16 18 C 0.53 10.02 7.15 -10.99 -0.08 9.95 16 19 O -0.52 -11.91 15.51 5.56 0.09 -11.82 16 20 C -0.15 -3.12 6.16 36.00 0.22 -2.89 16 21 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 22 C -0.53 -15.31 9.50 30.94 0.29 -15.02 16 23 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 24 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 25 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 26 Si 0.92 21.57 29.55 -169.99 -5.02 16.54 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 29 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.48 6.38 -51.93 -0.33 0.15 16 35 H 0.03 0.23 8.12 -51.93 -0.42 -0.19 16 36 H 0.08 0.60 5.54 -51.93 -0.29 0.31 16 37 H 0.08 0.70 6.12 -51.93 -0.32 0.38 16 38 H 0.03 0.29 8.13 -51.93 -0.42 -0.14 16 39 H 0.08 1.05 5.52 -51.93 -0.29 0.76 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.05 0.41 6.34 -51.93 -0.33 0.08 16 45 H 0.07 0.72 5.40 -51.93 -0.28 0.44 16 46 H 0.06 0.46 7.05 -51.93 -0.37 0.09 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.41 5.16 5.11 -40.82 -0.21 4.95 16 50 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 51 H 0.09 1.67 8.10 -51.91 -0.42 1.24 16 52 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 397.59 15.07 5.99 5.99 Total: -1.00 -32.46 397.59 -10.15 -42.61 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -9.05 Total: 2.80 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -0.14 Total: -11.65 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.20 Total: -40.62 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.09 Total: -11.82 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.46 -10.15 -42.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264587275.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.664 kcal (2) G-P(sol) polarization free energy of solvation -32.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds