Wall clock time and date at job start Sat Apr 11 2020 06:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46898 * 109.47006 * 179.97438 * 3 2 1 5 5 C 1.46813 * 111.00246 * 66.04550 * 4 3 2 6 6 C 1.52638 * 108.93295 * 189.19512 * 5 4 3 7 7 C 1.51831 * 110.79976 * 297.11458 * 6 5 4 8 8 C 1.50810 * 113.74042 * 44.72802 * 7 6 5 9 9 H 1.08999 * 111.42073 * 199.87831 * 8 7 6 10 10 C 1.46818 * 110.99919 * 189.96717 * 4 3 2 11 11 H 1.08999 * 113.08755 * 319.37497 * 10 4 3 12 12 C 1.54322 * 111.33634 * 90.38237 * 10 4 3 13 13 C 1.53003 * 113.65596 * 334.14790 * 12 10 4 14 14 C 1.52994 * 113.73993 * 203.11614 * 12 10 4 15 15 C 1.53292 * 115.36232 * 71.21821 * 8 7 6 16 16 H 1.08996 * 113.73497 * 99.33840 * 15 8 7 17 17 N 1.46502 * 113.72756 * 328.06781 * 15 8 7 18 18 C 1.34778 * 120.00215 * 104.50332 * 17 15 8 19 19 O 1.21281 * 119.99842 * 0.02562 * 18 17 15 20 20 C 1.50692 * 120.00087 * 179.97438 * 18 17 15 21 21 S 1.81002 * 109.47115 * 180.02562 * 20 18 17 22 22 C 1.76205 * 100.00130 * 180.02562 * 21 20 18 23 23 H 1.08001 * 119.99718 * 359.97438 * 22 21 20 24 24 C 1.38793 * 119.99808 * 180.02562 * 22 21 20 25 25 N 1.31626 * 120.00433 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99751 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47244 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47482 * 119.99515 * 26 24 22 29 29 H 1.48497 * 109.46996 * 239.99586 * 26 24 22 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 33 33 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 34 34 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 35 35 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 36 36 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 37 37 H 1.09000 * 109.55490 * 309.03068 * 5 4 3 38 38 H 1.08997 * 109.56157 * 69.24479 * 5 4 3 39 39 H 1.08998 * 109.21244 * 57.45688 * 6 5 4 40 40 H 1.09004 * 109.20986 * 176.78326 * 6 5 4 41 41 H 1.08994 * 108.63115 * 165.82821 * 7 6 5 42 42 H 1.09002 * 108.62882 * 283.76768 * 7 6 5 43 43 H 1.09000 * 109.46770 * 176.70987 * 13 12 10 44 44 H 1.08992 * 109.47291 * 296.71190 * 13 12 10 45 45 H 1.09000 * 109.46967 * 56.71821 * 13 12 10 46 46 H 1.08998 * 109.47582 * 303.24229 * 14 12 10 47 47 H 1.08999 * 109.47520 * 63.24949 * 14 12 10 48 48 H 1.09000 * 109.47020 * 183.24462 * 14 12 10 49 49 H 0.97003 * 119.99873 * 284.50355 * 17 15 8 50 50 H 1.08994 * 109.47506 * 300.00306 * 20 18 17 51 51 H 1.09007 * 109.47230 * 60.00335 * 20 18 17 52 52 H 0.97005 * 120.00600 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0357 0.8859 -1.2516 6 6 5.5437 0.6947 -1.1130 7 6 6.2389 2.0277 -0.9008 8 6 5.5499 2.9190 0.1018 9 1 5.8482 3.9603 -0.0201 10 6 4.0350 2.7925 0.2379 11 1 3.4780 3.5671 -0.2892 12 6 4.2446 3.0569 1.7438 13 6 3.3391 2.2164 2.6464 14 6 4.2421 4.5411 2.1148 15 6 5.6552 2.4677 1.5630 16 1 6.4252 2.9912 2.1294 17 7 5.7122 1.0131 1.7280 18 6 6.8826 0.4138 2.0239 19 8 7.8885 1.0788 2.1539 20 6 6.9412 -1.0823 2.1942 21 16 8.6374 -1.5792 2.5843 22 6 8.4209 -3.3222 2.7253 23 1 7.4442 -3.7587 2.5775 24 6 9.5054 -4.1339 3.0275 25 7 10.6957 -3.6019 3.2082 26 14 9.2760 -5.9818 3.1763 27 1 7.8527 -6.3255 2.9288 28 1 10.1326 -6.6691 2.1767 29 1 9.6602 -6.4199 4.5421 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 3.5627 -0.0757 -1.4508 38 1 3.8271 1.5721 -2.0723 39 1 5.7461 0.0450 -0.2615 40 1 5.9309 0.2285 -2.0190 41 1 7.2562 1.8392 -0.5579 42 1 6.2857 2.5518 -1.8554 43 1 3.5833 2.4132 3.6903 44 1 2.2975 2.4782 2.4612 45 1 3.4919 1.1589 2.4308 46 1 5.0073 5.0611 1.5386 47 1 3.2651 4.9699 1.8915 48 1 4.4519 4.6500 3.1789 49 1 4.9076 0.4813 1.6244 50 1 6.2793 -1.3817 3.0068 51 1 6.6239 -1.5659 1.2702 52 1 11.4537 -4.1693 3.4190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264587275.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:08 Heat of formation + Delta-G solvation = -33.418271 kcal Electronic energy + Delta-G solvation = -29606.215908 eV Core-core repulsion = 25924.557395 eV Total energy + Delta-G solvation = -3681.658513 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.60648 -39.90557 -37.51216 -35.60148 -34.58880 -34.43432 -32.89444 -31.16170 -30.55832 -28.34870 -27.69331 -27.38792 -26.15717 -24.23263 -23.56869 -21.91613 -21.33002 -20.21724 -19.96267 -19.17504 -17.88725 -17.07415 -16.89129 -16.87175 -16.49552 -16.40554 -15.81772 -15.57630 -15.44184 -15.32520 -14.85747 -14.65372 -14.47193 -14.30260 -14.13549 -13.77579 -13.63556 -13.51370 -13.29369 -13.14343 -13.03160 -12.91087 -12.71432 -12.60067 -12.43977 -12.31870 -12.11300 -11.97993 -11.87668 -11.76776 -11.67920 -11.55289 -11.32588 -11.14770 -10.86912 -10.84935 -10.75828 -10.25170 -9.70092 -9.16868 -8.64410 -8.33637 -6.11088 1.28545 1.41476 1.48106 1.59544 1.70288 2.27519 2.36797 2.85610 3.00380 3.34664 3.43595 3.47210 3.72235 3.90221 4.05467 4.06487 4.09963 4.19578 4.25565 4.30114 4.37458 4.43250 4.47269 4.51401 4.54185 4.60984 4.65382 4.71119 4.79449 4.82060 4.84644 4.87792 4.91943 5.00606 5.03773 5.10372 5.15773 5.20508 5.21066 5.25763 5.32599 5.37336 5.41340 5.42873 5.46033 5.55804 5.59368 5.73734 6.18740 6.21064 6.26710 6.71557 7.07697 7.39829 8.75797 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012972 B = 0.003234 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.018668 B = 8656.514951 C = 9631.017228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C 0.056 3.944 4 N -0.527 5.527 5 C 0.064 3.936 6 C -0.118 4.118 7 C -0.099 4.099 8 C -0.115 4.115 9 H 0.105 0.895 10 C 0.083 3.917 11 H 0.073 0.927 12 C -0.071 4.071 13 C -0.126 4.126 14 C -0.125 4.125 15 C 0.130 3.870 16 H 0.069 0.931 17 N -0.675 5.675 18 C 0.534 3.466 19 O -0.569 6.569 20 C -0.127 4.127 21 S -0.145 6.145 22 C -0.546 4.546 23 H 0.080 0.920 24 C 0.014 3.986 25 N -0.911 5.911 26 Si 0.998 3.002 27 H -0.257 1.257 28 H -0.273 1.273 29 H -0.273 1.273 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.036 0.964 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.039 0.961 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.032 0.968 42 H 0.064 0.936 43 H 0.045 0.955 44 H 0.072 0.928 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.079 0.921 48 H 0.060 0.940 49 H 0.417 0.583 50 H 0.102 0.898 51 H 0.102 0.898 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.525 13.866 -8.800 29.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.071 4.071 4 N -0.251 5.251 5 C -0.063 4.063 6 C -0.156 4.156 7 C -0.137 4.137 8 C -0.134 4.134 9 H 0.123 0.877 10 C -0.025 4.025 11 H 0.091 0.909 12 C -0.072 4.072 13 C -0.184 4.184 14 C -0.183 4.183 15 C 0.024 3.976 16 H 0.087 0.913 17 N -0.330 5.330 18 C 0.320 3.680 19 O -0.448 6.448 20 C -0.278 4.278 21 S 0.082 5.918 22 C -0.694 4.694 23 H 0.099 0.901 24 C -0.190 4.190 25 N -0.548 5.548 26 Si 0.820 3.180 27 H -0.181 1.181 28 H -0.199 1.199 29 H -0.199 1.199 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.054 0.946 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.050 0.950 42 H 0.083 0.917 43 H 0.064 0.936 44 H 0.091 0.909 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.098 0.902 48 H 0.079 0.921 49 H 0.259 0.741 50 H 0.120 0.880 51 H 0.120 0.880 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.563 14.636 -8.173 28.109 hybrid contribution -0.914 -1.535 -0.685 1.913 sum -23.477 13.101 -8.858 28.306 Atomic orbital electron populations 1.21698 0.94873 1.01933 1.02038 1.21531 0.95979 0.96085 1.02283 1.22300 0.85665 0.97536 1.01555 1.61833 1.08253 1.20350 1.34679 1.21914 0.94164 1.00131 0.90121 1.21319 0.95552 0.97106 1.01663 1.20460 0.98339 0.96184 0.98671 1.22349 0.95659 1.00422 0.95016 0.87737 1.22631 0.93981 0.90148 0.95769 0.90950 1.22320 0.93291 0.96647 0.94985 1.21622 0.99042 0.99935 0.97753 1.21579 1.03082 0.91809 1.01832 1.21892 0.98352 0.80768 0.96595 0.91301 1.45536 1.09950 1.07458 1.70024 1.19966 0.83643 0.88842 0.75578 1.90667 1.36071 1.66289 1.51792 1.23347 1.03189 0.95521 1.05747 1.85539 1.07052 1.07100 1.92124 1.23235 0.98446 0.92048 1.55624 0.90139 1.26106 0.93900 1.05173 0.93866 1.70190 1.00647 1.37947 1.45995 0.84919 0.79020 0.75968 0.78124 1.18084 1.19875 1.19880 0.92604 0.92560 0.92274 0.91886 0.92250 0.94562 0.89489 0.89602 0.94282 0.92710 0.91771 0.94951 0.91730 0.93571 0.90910 0.92109 0.92022 0.90232 0.92137 0.74101 0.87957 0.87967 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 71.98 0.71 -0.76 16 2 C -0.12 -1.46 5.88 30.60 0.18 -1.28 16 3 C 0.06 0.67 4.45 86.31 0.38 1.05 16 4 N -0.53 -8.03 1.80 -870.26 -1.56 -9.60 16 5 C 0.06 1.07 5.30 86.20 0.46 1.53 16 6 C -0.12 -2.67 5.54 30.09 0.17 -2.50 16 7 C -0.10 -2.37 5.33 29.50 0.16 -2.21 16 8 C -0.11 -2.36 3.47 -11.56 -0.04 -2.40 16 9 H 0.10 1.90 7.25 -2.39 -0.02 1.89 16 10 C 0.08 1.30 3.04 45.25 0.14 1.44 16 11 H 0.07 0.97 8.07 -2.39 -0.02 0.95 16 12 C -0.07 -1.18 1.35 -51.44 -0.07 -1.25 16 13 C -0.13 -2.01 7.59 71.98 0.55 -1.47 16 14 C -0.13 -1.66 9.10 71.98 0.66 -1.00 16 15 C 0.13 3.21 3.59 45.40 0.16 3.37 16 16 H 0.07 2.09 7.52 -2.39 -0.02 2.07 16 17 N -0.68 -19.01 2.39 -440.58 -1.05 -20.07 16 18 C 0.53 20.86 7.15 87.65 0.63 21.49 16 19 O -0.57 -27.42 15.51 -3.03 -0.05 -27.47 16 20 C -0.13 -5.32 6.16 71.23 0.44 -4.88 16 21 S -0.15 -8.28 20.57 -56.49 -1.16 -9.44 16 22 C -0.55 -31.79 9.50 67.95 0.65 -31.14 16 23 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 24 C 0.01 0.82 5.49 84.86 0.47 1.29 16 25 N -0.91 -56.68 13.22 21.65 0.29 -56.39 16 26 Si 1.00 44.22 29.55 68.60 2.03 46.25 16 27 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 28 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 29 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.06 0.76 6.38 -2.39 -0.02 0.75 16 35 H 0.04 0.41 8.12 -2.39 -0.02 0.39 16 36 H 0.09 0.94 5.54 -2.39 -0.01 0.93 16 37 H 0.09 1.33 6.12 -2.39 -0.01 1.32 16 38 H 0.04 0.61 8.13 -2.39 -0.02 0.59 16 39 H 0.05 1.48 5.52 -2.39 -0.01 1.46 16 40 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 41 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.07 0.89 6.34 -2.39 -0.02 0.87 16 45 H 0.06 1.10 5.40 -2.39 -0.01 1.08 16 46 H 0.06 0.81 7.05 -2.39 -0.02 0.79 16 47 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.42 10.23 5.11 -92.71 -0.47 9.75 16 50 H 0.10 3.95 8.14 -2.40 -0.02 3.93 16 51 H 0.10 3.95 8.10 -2.39 -0.02 3.93 16 52 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 Total: -1.00 -73.57 397.59 4.54 -69.03 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: 0.43 Total: 26.40 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: 5.63 Total: -18.72 kcal Atomic # 7 Polarization: -83.72 SS G_CDS: -2.33 Total: -86.06 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.05 Total: -27.47 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -1.16 Total: -9.44 kcal Total: -73.57 4.54 -69.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264587275.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.615 kcal (2) G-P(sol) polarization free energy of solvation -73.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds