Wall clock time and date at job start Sat Apr 11 2020 06:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47267 * 2 1 4 4 N 1.46898 * 109.47272 * 180.02562 * 3 2 1 5 5 C 1.47849 * 110.99958 * 69.15826 * 4 3 2 6 6 C 1.54900 * 104.79395 * 146.36618 * 5 4 3 7 7 C 1.55138 * 101.65433 * 322.92571 * 6 5 4 8 8 H 1.08994 * 110.85859 * 277.20410 * 7 6 5 9 9 C 1.53002 * 110.70559 * 154.03599 * 7 6 5 10 10 H 1.08997 * 109.50096 * 306.33978 * 9 7 6 11 11 C 1.53047 * 109.49524 * 66.40613 * 9 7 6 12 12 C 1.53038 * 109.53635 * 181.34844 * 11 9 7 13 13 C 1.53198 * 109.31483 * 298.63198 * 12 11 9 14 14 N 1.46933 * 108.77257 * 54.63593 * 13 12 11 15 15 C 1.34776 * 120.62933 * 126.37301 * 14 13 12 16 16 O 1.21282 * 119.99940 * 180.02562 * 15 14 13 17 17 C 1.50698 * 120.00035 * 359.97438 * 15 14 13 18 18 S 1.81000 * 109.47349 * 180.02562 * 17 15 14 19 19 C 1.76194 * 100.00068 * 180.02562 * 18 17 15 20 20 H 1.08006 * 120.00457 * 359.97438 * 19 18 17 21 21 C 1.38801 * 120.00163 * 180.02562 * 19 18 17 22 22 N 1.31640 * 119.99650 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 120.00461 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46966 * 89.99788 * 23 21 19 25 25 H 1.48500 * 109.47223 * 209.99878 * 23 21 19 26 26 H 1.48501 * 109.47335 * 329.99952 * 23 21 19 27 27 C 1.46928 * 118.73768 * 306.64474 * 14 13 12 28 28 C 1.47441 * 111.00254 * 190.00176 * 4 3 2 29 29 H 1.09004 * 109.46859 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46914 * 299.99677 * 1 2 3 31 31 H 1.08992 * 109.47421 * 59.99847 * 1 2 3 32 32 H 1.09001 * 109.46914 * 240.00323 * 2 1 3 33 33 H 1.09005 * 109.47166 * 120.00183 * 2 1 3 34 34 H 1.09001 * 109.46890 * 60.00309 * 3 2 1 35 35 H 1.08998 * 109.46782 * 300.00084 * 3 2 1 36 36 H 1.09002 * 110.37045 * 265.19239 * 5 4 3 37 37 H 1.08991 * 110.37169 * 27.41915 * 5 4 3 38 38 H 1.09002 * 110.99108 * 204.83808 * 6 5 4 39 39 H 1.09000 * 110.99360 * 81.02474 * 6 5 4 40 40 H 1.09000 * 109.45990 * 61.32619 * 11 9 7 41 41 H 1.09001 * 109.45695 * 301.36928 * 11 9 7 42 42 H 1.09003 * 109.49547 * 178.68376 * 12 11 9 43 43 H 1.09004 * 109.52665 * 58.60011 * 12 11 9 44 44 H 1.08999 * 109.58330 * 294.85063 * 13 12 11 45 45 H 1.08994 * 109.58705 * 174.42336 * 13 12 11 46 46 H 1.09001 * 109.47122 * 60.00223 * 17 15 14 47 47 H 1.09004 * 109.47371 * 300.00514 * 17 15 14 48 48 H 0.97001 * 119.99781 * 180.02562 * 22 21 19 49 49 H 1.08999 * 109.58344 * 173.14707 * 27 14 13 50 50 H 1.08994 * 109.58509 * 293.56920 * 27 14 13 51 51 H 1.08995 * 109.89289 * 117.33329 * 28 4 3 52 52 H 1.09010 * 109.88441 * 356.14677 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0383 0.9516 -1.2909 6 6 5.3441 1.7545 -1.5139 7 6 4.9554 3.1473 -0.9519 8 1 4.4146 3.7296 -1.6978 9 6 6.1968 3.9034 -0.4740 10 1 6.7520 3.2833 0.2297 11 6 7.0862 4.2355 -1.6744 12 6 8.3443 4.9621 -1.1937 13 6 7.9425 6.2740 -0.5121 14 7 6.9737 5.9767 0.5518 15 6 7.1848 6.4051 1.8121 16 8 6.3777 6.1528 2.6815 17 6 8.4243 7.1966 2.1412 18 16 8.4193 7.6217 3.9005 19 6 9.9335 8.5167 4.0034 20 1 10.5422 8.6515 3.1214 21 6 10.3447 9.0478 5.2180 22 7 9.6030 8.8832 6.2931 23 14 11.9503 9.9961 5.3273 24 1 11.6936 11.4356 5.0676 25 1 12.5297 9.8337 6.6849 26 1 12.9039 9.4731 4.3162 27 6 5.7733 5.1984 0.2168 28 6 4.0375 2.7980 0.2384 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 4.2543 -0.1151 -1.2312 37 1 3.3272 1.1498 -2.0928 38 1 5.5884 1.8158 -2.5745 39 1 6.1698 1.3219 -0.9490 40 1 6.5387 4.8759 -2.3659 41 1 7.3707 3.3135 -2.1816 42 1 8.9882 5.1776 -2.0464 43 1 8.8799 4.3323 -0.4833 44 1 7.4881 6.9417 -1.2441 45 1 8.8248 6.7470 -0.0811 46 1 8.4408 8.1099 1.5464 47 1 9.3076 6.5995 1.9145 48 1 9.8902 9.2547 7.1419 49 1 5.2249 4.9621 1.1287 50 1 5.1385 5.7767 -0.4544 51 1 4.6102 2.8146 1.1657 52 1 3.2156 3.5119 0.2948 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275176506.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:17 Heat of formation + Delta-G solvation = -53.520225 kcal Electronic energy + Delta-G solvation = -27652.401757 eV Core-core repulsion = 23969.871559 eV Total energy + Delta-G solvation = -3682.530199 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.37501 -39.22711 -37.23547 -35.06933 -33.13374 -32.41847 -31.87682 -30.57644 -29.33244 -28.04631 -25.73773 -25.50511 -25.02792 -23.14873 -22.20544 -21.21850 -20.70357 -20.18107 -18.98229 -17.66319 -16.74943 -16.40226 -15.81789 -15.62984 -15.48573 -15.09041 -14.79584 -14.62395 -14.30688 -13.97986 -13.90084 -13.81578 -13.41746 -13.36404 -13.21381 -12.91536 -12.76664 -12.57643 -12.50696 -12.15693 -11.88324 -11.79369 -11.57902 -11.42510 -11.41781 -11.14075 -11.07697 -11.05763 -11.01203 -10.97528 -10.80894 -10.75402 -10.64582 -10.39231 -9.78999 -9.31344 -9.05719 -8.56177 -8.46693 -8.20831 -6.48725 -6.20592 -3.91023 2.95459 3.08514 3.22757 3.26738 3.30894 3.61540 3.67605 4.18345 4.21123 4.35059 4.45071 4.62409 4.71386 4.72658 4.76828 4.85487 4.94336 5.01912 5.05829 5.11269 5.14413 5.16711 5.19756 5.25065 5.33598 5.35516 5.40770 5.42647 5.45586 5.49321 5.58388 5.62192 5.65284 5.69720 5.72029 5.72657 5.78629 5.85494 5.86844 5.89763 5.91194 5.96893 6.02238 6.09600 6.13417 6.24197 6.66858 6.73383 6.83431 7.59265 7.61133 8.36041 8.59577 9.24564 10.86799 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018640 B = 0.002105 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.810571 B =13295.700075 C =14432.482723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C 0.050 3.950 4 N -0.530 5.530 5 C 0.042 3.958 6 C -0.122 4.122 7 C -0.099 4.099 8 H 0.075 0.925 9 C -0.090 4.090 10 H 0.079 0.921 11 C -0.112 4.112 12 C -0.136 4.136 13 C 0.107 3.893 14 N -0.619 5.619 15 C 0.535 3.465 16 O -0.517 6.517 17 C -0.150 4.150 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.118 3.882 28 C 0.044 3.956 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.032 0.968 36 H 0.077 0.923 37 H 0.044 0.956 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.268 0.732 49 H 0.093 0.907 50 H 0.059 0.941 51 H 0.084 0.916 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.368 -15.218 -21.442 28.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.079 4.079 4 N -0.254 5.254 5 C -0.085 4.085 6 C -0.160 4.160 7 C -0.119 4.119 8 H 0.094 0.906 9 C -0.110 4.110 10 H 0.098 0.902 11 C -0.149 4.149 12 C -0.174 4.174 13 C -0.016 4.016 14 N -0.355 5.355 15 C 0.323 3.677 16 O -0.392 6.392 17 C -0.301 4.301 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.005 4.005 28 C -0.084 4.084 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.051 0.949 36 H 0.096 0.904 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.078 0.922 49 H 0.112 0.888 50 H 0.078 0.922 51 H 0.103 0.897 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.444 -15.871 -19.523 28.070 hybrid contribution 1.701 1.487 -1.684 2.818 sum -10.743 -14.384 -21.208 27.786 Atomic orbital electron populations 1.21746 0.95712 1.01735 1.01786 1.21496 0.95266 0.96398 1.02594 1.22379 0.87506 0.97232 1.00748 1.63583 1.07517 1.22597 1.31724 1.23054 0.95521 1.00017 0.89949 1.22759 0.97761 0.94495 1.00999 1.22361 0.95991 0.96123 0.97442 0.90611 1.21451 0.95554 0.96458 0.97527 0.90239 1.21555 0.95943 1.00323 0.97098 1.21931 0.97784 0.97068 1.00647 1.21720 0.93088 0.96768 0.90054 1.48081 1.23094 1.55627 1.08734 1.20327 0.87432 0.78873 0.81086 1.90688 1.46386 1.56069 1.46007 1.23551 0.97467 1.01618 1.07437 1.85406 1.30475 1.69972 0.97582 1.22860 1.07529 1.39947 0.97980 0.90971 1.24995 0.97938 0.95963 0.94712 1.70025 1.37347 1.43068 0.99809 0.86171 0.81915 0.79786 0.77641 1.20284 1.20750 1.19710 1.21471 0.87332 0.90919 1.00802 1.22960 0.97785 0.88640 0.99010 0.92569 0.92559 0.92983 0.92248 0.91104 0.90759 0.94937 0.90429 0.93792 0.90917 0.90382 0.91948 0.91654 0.90764 0.91248 0.91650 0.89259 0.89347 0.89310 0.92198 0.88832 0.92226 0.89739 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.12 -0.87 5.98 -26.73 -0.16 -1.03 16 3 C 0.05 0.41 4.56 -3.82 -0.02 0.39 16 4 N -0.53 -4.98 5.16 -231.25 -1.19 -6.17 16 5 C 0.04 0.33 5.78 -2.30 -0.01 0.31 16 6 C -0.12 -0.90 5.66 -24.60 -0.14 -1.04 16 7 C -0.10 -0.82 2.49 -88.80 -0.22 -1.04 16 8 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 9 C -0.09 -0.86 1.71 -90.72 -0.15 -1.02 16 10 H 0.08 0.90 8.11 -51.93 -0.42 0.48 16 11 C -0.11 -0.89 5.04 -26.69 -0.13 -1.03 16 12 C -0.14 -1.21 6.08 -26.61 -0.16 -1.37 16 13 C 0.11 1.18 6.34 -3.70 -0.02 1.15 16 14 N -0.62 -8.89 2.98 -173.02 -0.52 -9.41 16 15 C 0.53 10.34 7.72 -10.99 -0.08 10.25 16 16 O -0.52 -11.97 15.28 5.56 0.08 -11.88 16 17 C -0.15 -3.09 4.50 36.00 0.16 -2.93 16 18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 19 C -0.53 -15.30 9.50 30.94 0.29 -15.00 16 20 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 23 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 C 0.12 1.44 5.35 -3.93 -0.02 1.41 16 28 C 0.04 0.42 5.56 -2.84 -0.02 0.41 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.42 7.49 -51.93 -0.39 0.03 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.64 8.03 -51.93 -0.42 0.22 16 35 H 0.03 0.26 7.85 -51.93 -0.41 -0.15 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.04 0.32 7.62 -51.93 -0.40 -0.08 16 38 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 39 H 0.08 0.63 8.02 -51.93 -0.42 0.22 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.46 7.42 -51.93 -0.39 0.08 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.09 1.02 5.93 -51.93 -0.31 0.71 16 46 H 0.09 1.69 7.94 -51.92 -0.41 1.27 16 47 H 0.09 1.69 7.69 -51.91 -0.40 1.30 16 48 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 49 H 0.09 1.34 6.12 -51.93 -0.32 1.02 16 50 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.08 0.98 7.46 -51.93 -0.39 0.59 16 52 H 0.06 0.53 7.55 -51.92 -0.39 0.14 16 LS Contribution 410.78 15.07 6.19 6.19 Total: -1.00 -33.48 410.78 -12.02 -45.50 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -9.66 Total: -2.16 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -0.42 Total: -9.08 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: -0.98 Total: -41.12 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.08 Total: -11.88 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.48 -12.02 -45.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275176506.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.021 kcal (2) G-P(sol) polarization free energy of solvation -33.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds