Wall clock time and date at job start Sat Apr 11 2020 06:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46758 * 2 1 4 4 N 1.46906 * 109.46972 * 179.97438 * 3 2 1 5 5 C 1.47897 * 110.99555 * 69.87474 * 4 3 2 6 6 C 1.54000 * 107.05672 * 145.84575 * 5 4 3 7 7 C 1.54598 * 105.22213 * 358.72428 * 6 5 4 8 8 H 1.09003 * 110.72246 * 96.45403 * 7 6 5 9 9 C 1.53005 * 110.72373 * 219.73164 * 7 6 5 10 10 H 1.09001 * 109.49400 * 58.48392 * 9 7 6 11 11 C 1.53035 * 109.49901 * 178.54990 * 9 7 6 12 12 C 1.53040 * 109.54123 * 181.31969 * 11 9 7 13 13 C 1.53194 * 109.30894 * 298.63662 * 12 11 9 14 14 N 1.46921 * 108.77913 * 54.63309 * 13 12 11 15 15 C 1.34774 * 120.63335 * 126.41050 * 14 13 12 16 16 O 1.21282 * 120.00297 * 179.97438 * 15 14 13 17 17 C 1.50701 * 120.00031 * 0.02562 * 15 14 13 18 18 S 1.80999 * 109.47485 * 179.97438 * 17 15 14 19 19 C 1.76198 * 99.99929 * 179.97438 * 18 17 15 20 20 H 1.07993 * 120.00273 * 0.02562 * 19 18 17 21 21 C 1.38808 * 119.99666 * 179.97438 * 19 18 17 22 22 N 1.31627 * 119.99564 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00030 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47222 * 89.99806 * 23 21 19 25 25 H 1.48494 * 109.46929 * 209.99853 * 23 21 19 26 26 H 1.48496 * 109.47018 * 329.99551 * 23 21 19 27 27 C 1.46933 * 118.73741 * 306.39309 * 14 13 12 28 28 C 1.48533 * 111.00245 * 187.27424 * 4 3 2 29 29 H 1.09000 * 109.47167 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47037 * 299.99420 * 1 2 3 31 31 H 1.08996 * 109.47468 * 59.99467 * 1 2 3 32 32 H 1.09004 * 109.47037 * 240.00580 * 2 1 3 33 33 H 1.08991 * 109.47132 * 120.00222 * 2 1 3 34 34 H 1.09004 * 109.46873 * 60.00480 * 3 2 1 35 35 H 1.08991 * 109.47481 * 300.00009 * 3 2 1 36 36 H 1.09000 * 109.91881 * 26.49521 * 5 4 3 37 37 H 1.08997 * 109.91908 * 265.19336 * 5 4 3 38 38 H 1.09002 * 110.31026 * 117.69182 * 6 5 4 39 39 H 1.09000 * 110.30915 * 239.76211 * 6 5 4 40 40 H 1.08998 * 109.45707 * 301.34008 * 11 9 7 41 41 H 1.08995 * 109.45965 * 61.29680 * 11 9 7 42 42 H 1.09004 * 109.49552 * 58.57897 * 12 11 9 43 43 H 1.08998 * 109.50200 * 178.64885 * 12 11 9 44 44 H 1.09007 * 109.58376 * 174.42156 * 13 12 11 45 45 H 1.08998 * 109.58602 * 294.84038 * 13 12 11 46 46 H 1.08999 * 109.46949 * 300.00075 * 17 15 14 47 47 H 1.09004 * 109.47364 * 59.99419 * 17 15 14 48 48 H 0.97003 * 119.99195 * 179.97438 * 22 21 19 49 49 H 1.09003 * 109.58367 * 293.81550 * 27 14 13 50 50 H 1.08998 * 109.58236 * 173.39616 * 27 14 13 51 51 H 1.09003 * 110.66452 * 318.71648 * 28 4 3 52 52 H 1.08995 * 110.66642 * 81.67547 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0394 0.9673 -1.2956 6 6 5.3388 1.7485 -1.5656 7 6 5.4905 2.7113 -0.3656 8 1 6.1535 2.2867 0.3882 9 6 5.9997 4.0778 -0.8288 10 1 5.3063 4.4962 -1.5583 11 6 6.1050 5.0182 0.3739 12 6 6.5829 6.3950 -0.0931 13 6 7.9718 6.2614 -0.7255 14 7 7.9117 5.2505 -1.7899 15 6 8.3346 5.5397 -3.0364 16 8 8.2802 4.6963 -3.9063 17 6 8.8762 6.9108 -3.3492 18 16 9.3580 6.9861 -5.0923 19 6 9.9369 8.6481 -5.1781 20 1 9.9161 9.2733 -4.2979 21 6 10.4207 9.1533 -6.3771 22 7 10.8527 10.3950 -6.4413 23 14 10.4574 8.0716 -7.8995 24 1 9.1789 8.2167 -8.6408 25 1 11.5854 8.4841 -8.7727 26 1 10.6371 6.6541 -7.4953 27 6 7.3820 3.9179 -1.4694 28 6 4.0412 2.8181 0.1762 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 1.6766 1.9563 0.8901 35 1 1.6766 1.9563 -0.8899 36 1 3.3165 1.1641 -2.0873 37 1 4.2527 -0.1002 -1.2406 38 1 6.1876 1.0662 -1.6129 39 1 5.2551 2.3123 -2.4947 40 1 5.1274 5.1142 0.8464 41 1 6.8167 4.6111 1.0920 42 1 5.8845 6.7919 -0.8299 43 1 6.6347 7.0710 0.7603 44 1 8.2746 7.2195 -1.1482 45 1 8.6904 5.9511 0.0331 46 1 8.1082 7.6586 -3.1515 47 1 9.7462 7.1093 -2.7232 48 1 11.1911 10.7480 -7.2791 49 1 8.0525 3.4164 -0.7715 50 1 7.2956 3.3297 -2.3830 51 1 3.4638 3.5319 -0.4114 52 1 4.0408 3.0992 1.2293 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275176511.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:22 Heat of formation + Delta-G solvation = -53.954873 kcal Electronic energy + Delta-G solvation = -27630.129511 eV Core-core repulsion = 23947.580464 eV Total energy + Delta-G solvation = -3682.549046 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.41106 -39.28878 -37.31930 -35.17020 -33.21637 -32.44292 -32.03202 -30.34425 -29.64924 -28.11012 -25.86379 -25.65366 -24.98195 -23.25918 -22.19310 -21.49323 -20.74122 -19.92577 -19.09294 -17.67727 -16.87594 -16.55116 -16.04444 -15.72790 -15.39107 -15.05804 -14.97357 -14.84820 -14.32952 -14.00955 -13.91394 -13.81955 -13.59013 -13.29949 -13.20684 -13.14192 -12.81755 -12.74597 -12.63317 -12.16641 -12.03392 -11.76387 -11.73036 -11.52370 -11.41821 -11.26889 -11.22410 -11.10906 -11.01364 -10.98323 -10.78561 -10.67877 -10.57119 -10.42969 -9.85955 -9.44824 -9.00780 -8.78399 -8.55649 -8.49055 -6.92222 -6.29412 -4.00984 2.71559 2.94143 3.19746 3.32778 3.50303 3.56816 3.62901 4.16716 4.32682 4.34419 4.42307 4.53959 4.62946 4.65991 4.70097 4.79309 4.85074 4.87507 4.97115 5.02696 5.09705 5.09950 5.14884 5.18945 5.21931 5.26814 5.33297 5.36943 5.38696 5.41669 5.51223 5.56777 5.62698 5.64275 5.66333 5.68992 5.73714 5.74707 5.77618 5.83063 5.85403 5.88628 5.97990 5.99329 6.03172 6.19974 6.54118 6.59343 6.71100 7.48828 7.93656 8.40918 8.45240 9.16906 10.79778 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019784 B = 0.002087 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.949724 B =13411.175480 C =14169.570801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C 0.046 3.954 4 N -0.520 5.520 5 C 0.037 3.963 6 C -0.131 4.131 7 C -0.080 4.080 8 H 0.085 0.915 9 C -0.093 4.093 10 H 0.075 0.925 11 C -0.113 4.113 12 C -0.136 4.136 13 C 0.106 3.894 14 N -0.618 5.618 15 C 0.533 3.467 16 O -0.521 6.521 17 C -0.121 4.121 18 S -0.143 6.143 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.119 3.881 28 C 0.042 3.958 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.035 0.965 36 H 0.044 0.956 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.068 0.932 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.271 0.729 49 H 0.063 0.937 50 H 0.093 0.907 51 H 0.045 0.955 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.643 -17.052 18.585 30.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.083 4.083 4 N -0.243 5.243 5 C -0.091 4.091 6 C -0.169 4.169 7 C -0.100 4.100 8 H 0.104 0.896 9 C -0.112 4.112 10 H 0.093 0.907 11 C -0.151 4.151 12 C -0.174 4.174 13 C -0.018 4.018 14 N -0.353 5.353 15 C 0.321 3.679 16 O -0.395 6.395 17 C -0.272 4.272 18 S 0.083 5.917 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.004 4.004 28 C -0.086 4.086 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.053 0.947 36 H 0.062 0.938 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.108 0.892 45 H 0.086 0.914 46 H 0.114 0.886 47 H 0.115 0.885 48 H 0.080 0.920 49 H 0.082 0.918 50 H 0.111 0.889 51 H 0.063 0.937 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.481 -18.492 17.597 30.384 hybrid contribution -0.182 1.447 -0.333 1.496 sum -16.663 -17.044 17.264 29.432 Atomic orbital electron populations 1.21747 0.95661 1.01805 1.01776 1.21485 0.95324 0.96266 1.02661 1.22330 0.87705 0.97387 1.00832 1.64756 1.07658 1.20605 1.31313 1.22878 0.95930 1.00269 0.90054 1.22531 0.97636 0.98181 0.98579 1.22061 0.96073 0.94451 0.97422 0.89628 1.21565 0.97286 0.94682 0.97694 0.90694 1.21573 1.01509 0.94823 0.97150 1.21930 0.97073 0.97483 1.00944 1.21758 0.97164 0.92654 0.90185 1.48060 1.64357 1.13240 1.09683 1.20293 0.76793 0.89576 0.81209 1.90681 1.54176 1.49174 1.45500 1.23309 1.03811 0.96115 1.03931 1.84789 1.82146 1.19451 1.05313 1.22310 1.48326 0.95269 1.00946 0.89414 1.24711 0.93379 0.94730 0.98468 1.69940 1.40390 1.13983 1.27352 0.86735 0.78790 0.83182 0.83158 1.19231 1.19936 1.15922 1.21554 0.93178 0.84489 1.01132 1.23273 0.94606 0.89553 1.01129 0.92509 0.92674 0.92866 0.92082 0.91188 0.90898 0.94695 0.93798 0.90450 0.90718 0.90934 0.91671 0.91613 0.91350 0.90587 0.89190 0.91381 0.88615 0.88541 0.91954 0.91824 0.88883 0.93667 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.46 16 2 C -0.12 -0.78 5.99 -26.73 -0.16 -0.94 16 3 C 0.05 0.33 4.76 -3.82 -0.02 0.31 16 4 N -0.52 -4.30 5.27 -230.35 -1.21 -5.51 16 5 C 0.04 0.30 5.79 -2.75 -0.02 0.28 16 6 C -0.13 -1.12 5.62 -25.37 -0.14 -1.26 16 7 C -0.08 -0.64 2.61 -88.67 -0.23 -0.87 16 8 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 9 C -0.09 -0.83 1.73 -90.50 -0.16 -0.99 16 10 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 11 C -0.11 -0.86 5.02 -26.69 -0.13 -0.99 16 12 C -0.14 -1.15 6.08 -26.61 -0.16 -1.31 16 13 C 0.11 1.10 6.34 -3.71 -0.02 1.08 16 14 N -0.62 -8.38 2.97 -172.77 -0.51 -8.89 16 15 C 0.53 9.73 7.72 -10.99 -0.08 9.65 16 16 O -0.52 -11.34 15.28 5.56 0.08 -11.26 16 17 C -0.12 -2.38 4.50 36.01 0.16 -2.21 16 18 S -0.14 -3.66 18.55 -107.50 -1.99 -5.66 16 19 C -0.52 -15.02 10.04 30.94 0.31 -14.71 16 20 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 21 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 22 N -0.88 -26.53 13.97 55.49 0.78 -25.75 16 23 Si 0.86 21.85 27.74 -169.99 -4.72 17.13 16 24 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 27 C 0.12 1.37 5.40 -3.71 -0.02 1.35 16 28 C 0.04 0.33 5.10 -1.81 -0.01 0.32 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.42 7.52 -51.93 -0.39 0.03 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.50 8.11 -51.93 -0.42 0.08 16 35 H 0.03 0.27 7.82 -51.93 -0.41 -0.14 16 36 H 0.04 0.37 7.57 -51.93 -0.39 -0.02 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.70 7.61 -51.93 -0.40 0.31 16 40 H 0.06 0.44 7.32 -51.93 -0.38 0.06 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 0.98 5.93 -51.93 -0.31 0.67 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.10 1.75 7.69 -51.92 -0.40 1.35 16 47 H 0.10 1.77 7.94 -51.91 -0.41 1.36 16 48 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 49 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.09 1.25 6.24 -51.93 -0.32 0.93 16 51 H 0.05 0.37 7.92 -51.93 -0.41 -0.04 16 52 H 0.08 0.58 8.02 -51.93 -0.42 0.17 16 LS Contribution 408.70 15.07 6.16 6.16 Total: -1.00 -32.90 408.70 -11.56 -44.46 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -9.73 Total: -2.63 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -0.41 Total: -8.05 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: -0.95 Total: -40.16 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.08 Total: -11.26 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.72 Total: 17.13 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.90 -11.56 -44.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275176511.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.498 kcal (2) G-P(sol) polarization free energy of solvation -32.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds