Wall clock time and date at job start Sat Apr 11 2020 06:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47328 * 2 1 4 4 N 1.46897 * 109.47064 * 179.97438 * 3 2 1 5 5 C 1.47909 * 111.00038 * 69.87563 * 4 3 2 6 6 C 1.53990 * 107.05761 * 145.84387 * 5 4 3 7 7 C 1.54593 * 105.14421 * 358.77477 * 6 5 4 8 8 H 1.08994 * 110.72783 * 96.57639 * 7 6 5 9 9 C 1.53004 * 110.72535 * 219.68897 * 7 6 5 10 10 H 1.09001 * 109.69823 * 306.30282 * 9 7 6 11 11 C 1.53190 * 109.58724 * 66.65701 * 9 7 6 12 12 C 1.53042 * 109.30886 * 174.42187 * 11 9 7 13 13 C 1.53039 * 109.53981 * 298.63622 * 12 11 9 14 14 C 1.52761 * 109.38365 * 61.24019 * 13 12 11 15 15 N 1.46924 * 109.58467 * 185.94995 * 9 7 6 16 16 C 1.34775 * 120.63221 * 6.57760 * 15 9 7 17 17 O 1.21278 * 119.99961 * 355.35774 * 16 15 9 18 18 C 1.50700 * 119.99978 * 175.08123 * 16 15 9 19 19 S 1.81000 * 109.47187 * 180.27485 * 18 16 15 20 20 C 1.76203 * 100.00165 * 180.02562 * 19 18 16 21 21 H 1.07994 * 119.99901 * 0.02562 * 20 19 18 22 22 C 1.38799 * 119.99781 * 179.97438 * 20 19 18 23 23 N 1.31626 * 120.00319 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99647 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46984 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46938 * 119.99916 * 24 22 20 27 27 H 1.48495 * 109.47128 * 239.99922 * 24 22 20 28 28 C 1.48536 * 111.00177 * 187.26955 * 4 3 2 29 29 H 1.09007 * 109.46743 * 59.99779 * 1 2 3 30 30 H 1.08998 * 109.47383 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47393 * 300.00198 * 1 2 3 32 32 H 1.09008 * 109.47154 * 240.00042 * 2 1 3 33 33 H 1.08995 * 109.47069 * 120.00113 * 2 1 3 34 34 H 1.08995 * 109.47141 * 60.00030 * 3 2 1 35 35 H 1.09003 * 109.46916 * 299.99863 * 3 2 1 36 36 H 1.09001 * 109.91630 * 26.49146 * 5 4 3 37 37 H 1.09002 * 110.07927 * 265.28730 * 5 4 3 38 38 H 1.09004 * 110.30571 * 239.85632 * 6 5 4 39 39 H 1.09000 * 110.31050 * 117.69413 * 6 5 4 40 40 H 1.09002 * 109.49754 * 294.37504 * 11 9 7 41 41 H 1.09001 * 109.49392 * 54.47268 * 11 9 7 42 42 H 1.08994 * 109.46033 * 58.66116 * 12 11 9 43 43 H 1.09002 * 109.45832 * 178.61715 * 12 11 9 44 44 H 1.09003 * 109.49685 * 181.31955 * 13 12 11 45 45 H 1.09001 * 109.49737 * 301.41255 * 13 12 11 46 46 H 1.09002 * 109.51202 * 185.70316 * 14 13 12 47 47 H 1.09003 * 109.43143 * 65.42642 * 14 13 12 48 48 H 1.08997 * 109.47405 * 300.27432 * 18 16 15 49 49 H 1.09005 * 109.47019 * 60.27861 * 18 16 15 50 50 H 0.97001 * 120.00255 * 180.02562 * 23 22 20 51 51 H 1.09000 * 110.66807 * 81.84660 * 28 4 3 52 52 H 1.09003 * 110.66459 * 318.71271 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 0.0006 5 6 4.0396 0.9671 -1.2956 6 6 5.3389 1.7482 -1.5656 7 6 5.4894 2.7093 -0.3641 8 1 6.1539 2.2850 0.3884 9 6 5.9993 4.0764 -0.8249 10 1 6.9147 3.9512 -1.4033 11 6 4.9340 4.7569 -1.6902 12 6 5.3910 6.1769 -2.0319 13 6 5.5555 6.9857 -0.7432 14 6 6.6224 6.3318 0.1331 15 7 6.2684 4.9219 0.3461 16 6 6.1866 4.4152 1.5924 17 8 5.8071 3.2756 1.7599 18 6 6.5725 5.2628 2.7772 19 16 6.3628 4.3046 4.2983 20 6 6.8690 5.5028 5.4870 21 1 7.1812 6.4850 5.1644 22 6 6.8656 5.1845 6.8380 23 7 6.4846 3.9875 7.2312 24 14 7.4016 6.4550 8.0982 25 1 7.7790 7.7123 7.4038 26 1 6.2822 6.7249 9.0360 27 1 8.5690 5.9381 8.8565 28 6 4.0413 2.8180 0.1761 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 1.6767 1.9563 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 3.3167 1.1639 -2.0874 37 1 4.2522 -0.1007 -1.2441 38 1 5.2547 2.3133 -2.4939 39 1 6.1877 1.0659 -1.6129 40 1 4.7945 4.1883 -2.6097 41 1 3.9929 4.7995 -1.1419 42 1 6.3444 6.1347 -2.5584 43 1 4.6460 6.6549 -2.6680 44 1 5.8583 8.0037 -0.9887 45 1 4.6085 7.0075 -0.2039 46 1 6.6701 6.8458 1.0932 47 1 7.5896 6.3945 -0.3656 48 1 7.6143 5.5687 2.6812 49 1 5.9361 6.1470 2.8141 50 1 6.4818 3.7652 8.1754 51 1 4.0438 3.0981 1.2295 52 1 3.4640 3.5317 -0.4116 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277284512.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:39 Heat of formation + Delta-G solvation = -33.793806 kcal Electronic energy + Delta-G solvation = -29066.758191 eV Core-core repulsion = 25385.083394 eV Total energy + Delta-G solvation = -3681.674797 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.96931 -39.56279 -38.28154 -35.77690 -34.58254 -33.91691 -33.17769 -31.03887 -30.38684 -29.02983 -27.67212 -26.69368 -25.48944 -24.33623 -22.92139 -22.14952 -21.70889 -20.86535 -20.06550 -19.23022 -17.88726 -17.10242 -16.89898 -16.86610 -16.74668 -16.36566 -15.88951 -15.84769 -15.32295 -15.22434 -14.95483 -14.58951 -14.38410 -14.34414 -14.27186 -14.08233 -13.74755 -13.59407 -13.23646 -13.16215 -13.08258 -12.91829 -12.66660 -12.58294 -12.54363 -12.24756 -12.12860 -11.87378 -11.73862 -11.70313 -11.62840 -11.60870 -11.43962 -11.36245 -11.26744 -11.14784 -10.21802 -9.92203 -9.40720 -9.17409 -8.63457 -8.34085 -6.10881 1.27831 1.40325 1.47065 1.57780 1.67905 2.15917 2.28753 2.99832 3.05794 3.29579 3.64813 3.71524 3.77040 3.89424 4.00903 4.02515 4.08160 4.12741 4.18178 4.23604 4.25858 4.30607 4.44807 4.47333 4.47788 4.49181 4.56314 4.62754 4.70073 4.73850 4.79000 4.85073 4.89602 4.92424 4.99718 5.06703 5.11433 5.12069 5.14688 5.19812 5.22909 5.27703 5.37849 5.40131 5.41857 5.48497 5.52339 5.82873 6.10282 6.20059 6.25735 6.42457 7.07278 7.33006 8.75101 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010031 B = 0.003447 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.557957 B = 8119.914885 C =10136.734540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C 0.050 3.950 4 N -0.541 5.541 5 C 0.041 3.959 6 C -0.127 4.127 7 C -0.088 4.088 8 H 0.086 0.914 9 C 0.158 3.842 10 H 0.088 0.912 11 C -0.133 4.133 12 C -0.113 4.113 13 C -0.132 4.132 14 C 0.100 3.900 15 N -0.604 5.604 16 C 0.521 3.479 17 O -0.524 6.524 18 C -0.125 4.125 19 S -0.144 6.144 20 C -0.545 4.545 21 H 0.079 0.921 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.997 3.003 25 H -0.257 1.257 26 H -0.274 1.274 27 H -0.274 1.274 28 C 0.053 3.947 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.041 0.959 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.057 0.943 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.098 0.902 45 H 0.051 0.949 46 H 0.081 0.919 47 H 0.088 0.912 48 H 0.098 0.902 49 H 0.097 0.903 50 H 0.270 0.730 51 H 0.060 0.940 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.856 3.029 -24.996 25.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C -0.078 4.078 4 N -0.265 5.265 5 C -0.086 4.086 6 C -0.166 4.166 7 C -0.107 4.107 8 H 0.104 0.896 9 C 0.056 3.944 10 H 0.106 0.894 11 C -0.171 4.171 12 C -0.150 4.150 13 C -0.170 4.170 14 C -0.022 4.022 15 N -0.339 5.339 16 C 0.309 3.691 17 O -0.402 6.402 18 C -0.276 4.276 19 S 0.083 5.917 20 C -0.693 4.693 21 H 0.097 0.903 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.819 3.181 25 H -0.181 1.181 26 H -0.199 1.199 27 H -0.199 1.199 28 C -0.074 4.074 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.116 0.884 45 H 0.070 0.930 46 H 0.100 0.900 47 H 0.106 0.894 48 H 0.117 0.883 49 H 0.115 0.885 50 H 0.079 0.921 51 H 0.078 0.922 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.287 0.898 -24.203 24.790 hybrid contribution 0.345 2.162 0.664 2.288 sum -4.942 3.061 -23.539 24.246 Atomic orbital electron populations 1.21712 0.94348 1.02400 1.01949 1.21439 0.96368 0.95345 1.02025 1.22288 0.87498 0.97966 1.00059 1.64664 1.08045 1.21746 1.32047 1.22830 0.96091 0.99997 0.89707 1.22599 0.97527 0.98142 0.98288 1.22523 0.97136 0.94439 0.96583 0.89621 1.21327 0.98669 0.88928 0.85519 0.89401 1.22142 0.97936 0.97346 0.99660 1.21502 1.02655 0.93977 0.96911 1.21839 0.98490 1.00305 0.96334 1.21906 0.99356 0.79420 1.01557 1.48058 1.69510 1.12062 1.04263 1.19998 0.77747 0.87302 0.84073 1.90713 1.45242 1.19176 1.85055 1.23416 1.04933 1.02521 0.96729 1.85542 1.87674 1.21960 0.96510 1.23223 1.51369 1.00899 0.93846 0.90270 1.26099 0.94664 0.98252 1.00069 1.70191 1.45880 1.21678 1.16988 0.84938 0.77992 0.77939 0.77279 1.18064 1.19941 1.19911 1.23553 0.94577 0.88758 1.00522 0.91964 0.91556 0.93152 0.91456 0.92967 0.92862 0.94067 0.92839 0.91043 0.89271 0.91023 0.89179 0.92492 0.90328 0.90388 0.88380 0.93009 0.90039 0.89369 0.88324 0.88487 0.92062 0.92197 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.91 71.98 0.71 -1.86 16 2 C -0.11 -2.51 5.99 30.59 0.18 -2.33 16 3 C 0.05 1.29 4.76 86.30 0.41 1.70 16 4 N -0.54 -16.10 5.27 -882.99 -4.65 -20.75 16 5 C 0.04 0.95 5.79 86.44 0.50 1.45 16 6 C -0.13 -2.68 6.35 31.47 0.20 -2.48 16 7 C -0.09 -2.46 2.16 -9.59 -0.02 -2.48 16 8 H 0.09 3.22 5.70 -23.67 -0.14 3.08 16 9 C 0.16 3.52 2.69 44.98 0.12 3.65 16 10 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 11 C -0.13 -2.23 4.71 30.67 0.14 -2.08 16 12 C -0.11 -1.42 5.89 30.62 0.18 -1.24 16 13 C -0.13 -1.96 6.06 30.53 0.19 -1.77 16 14 C 0.10 1.92 6.30 86.22 0.54 2.46 16 15 N -0.60 -15.99 2.97 -795.85 -2.37 -18.35 16 16 C 0.52 19.32 7.32 87.66 0.64 19.96 16 17 O -0.52 -23.05 9.03 -3.02 -0.03 -23.08 16 18 C -0.12 -5.09 4.55 71.24 0.32 -4.76 16 19 S -0.14 -8.09 20.57 -56.49 -1.16 -9.26 16 20 C -0.55 -31.58 9.50 67.95 0.65 -30.94 16 21 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 22 C 0.01 0.80 5.49 84.86 0.47 1.26 16 23 N -0.91 -56.67 13.22 21.65 0.29 -56.39 16 24 Si 1.00 44.18 29.55 68.60 2.03 46.20 16 25 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 27 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 28 C 0.05 1.66 4.97 86.65 0.43 2.09 16 29 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.07 1.34 7.52 -2.38 -0.02 1.32 16 33 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.05 1.54 8.11 -2.39 -0.02 1.52 16 35 H 0.04 0.93 7.82 -2.39 -0.02 0.91 16 36 H 0.05 1.03 7.57 -2.39 -0.02 1.01 16 37 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.09 1.39 6.35 -2.38 -0.02 1.37 16 39 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.09 1.19 6.72 -2.39 -0.02 1.17 16 41 H 0.06 1.19 5.62 -2.39 -0.01 1.18 16 42 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.08 0.80 8.14 -2.39 -0.02 0.79 16 44 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.08 1.70 5.97 -2.39 -0.01 1.68 16 47 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.10 3.73 8.11 -2.40 -0.02 3.71 16 49 H 0.10 3.68 7.49 -2.39 -0.02 3.66 16 50 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 51 H 0.06 2.49 5.71 -2.39 -0.01 2.48 16 52 H 0.05 1.29 5.15 -2.39 -0.01 1.28 16 Total: -1.00 -74.41 396.02 0.54 -73.87 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 0.76 Total: 25.13 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: 5.67 Total: -17.38 kcal Atomic # 7 Polarization: -88.76 SS G_CDS: -6.73 Total: -95.48 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.03 Total: -23.08 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: -8.09 SS G_CDS: -1.16 Total: -9.26 kcal Total: -74.41 0.54 -73.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277284512.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.078 kcal (2) G-P(sol) polarization free energy of solvation -74.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds