Wall clock time and date at job start Sat Apr 11 2020 06:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46791 * 2 1 4 4 N 1.46903 * 109.46845 * 299.99805 * 3 2 1 5 5 C 1.46897 * 110.99729 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.47009 * 180.02562 * 5 4 3 7 7 C 1.54960 * 110.92256 * 71.53807 * 6 5 4 8 8 C 1.54267 * 104.16076 * 156.29698 * 7 6 5 9 9 C 1.53877 * 106.63707 * 336.44304 * 8 7 6 10 10 C 1.54260 * 106.59967 * 359.97438 * 9 8 7 11 11 N 1.46495 * 109.47143 * 240.00018 * 2 1 3 12 12 C 1.34776 * 120.00035 * 174.51277 * 11 2 1 13 13 O 1.21286 * 119.99941 * 5.20213 * 12 11 2 14 14 C 1.50697 * 120.00296 * 185.19866 * 12 11 2 15 15 S 1.80996 * 109.47515 * 180.02562 * 14 12 11 16 16 C 1.76198 * 100.00417 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99566 * 359.97438 * 16 15 14 18 18 C 1.38794 * 120.00051 * 179.97438 * 16 15 14 19 19 N 1.31633 * 119.99964 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 120.00242 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47522 * 90.00061 * 20 18 16 22 22 H 1.48498 * 109.47196 * 209.99950 * 20 18 16 23 23 H 1.48505 * 109.47057 * 329.99767 * 20 18 16 24 24 C 1.53003 * 109.47156 * 119.99500 * 2 1 3 25 25 C 1.53003 * 117.49440 * 122.33120 * 24 2 1 26 26 C 1.53000 * 117.49663 * 53.67153 * 24 2 1 27 27 H 1.08994 * 109.46854 * 60.00614 * 1 2 3 28 28 H 1.09001 * 109.46542 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46865 * 299.99935 * 1 2 3 30 30 H 1.09000 * 109.46640 * 180.02562 * 3 2 1 31 31 H 1.08992 * 109.47293 * 59.99864 * 3 2 1 32 32 H 1.00895 * 111.00214 * 56.05042 * 4 3 2 33 33 H 1.08996 * 109.47751 * 60.00232 * 5 4 3 34 34 H 1.09003 * 109.47427 * 299.99576 * 5 4 3 35 35 H 1.09002 * 110.67149 * 308.23035 * 6 5 4 36 36 H 1.08997 * 110.48060 * 37.64049 * 7 6 5 37 37 H 1.08998 * 110.53259 * 274.97393 * 7 6 5 38 38 H 1.08999 * 110.03246 * 217.13880 * 8 7 6 39 39 H 1.09000 * 110.03581 * 95.75063 * 8 7 6 40 40 H 1.09008 * 110.02970 * 119.26168 * 9 8 7 41 41 H 1.09005 * 110.03586 * 240.63957 * 9 8 7 42 42 H 1.09004 * 110.48586 * 142.28883 * 10 9 8 43 43 H 1.08997 * 110.48356 * 264.79406 * 10 9 8 44 44 H 0.97001 * 120.00114 * 354.51055 * 11 2 1 45 45 H 1.09007 * 109.47249 * 300.00166 * 14 12 11 46 46 H 1.08997 * 109.47363 * 60.00059 * 14 12 11 47 47 H 0.97002 * 119.99831 * 179.97438 * 19 18 16 48 48 H 1.08995 * 115.54951 * 268.00122 * 24 2 1 49 49 H 1.08990 * 117.50144 * 359.97438 * 25 24 2 50 50 H 1.09004 * 117.49744 * 145.02476 * 25 24 2 51 51 H 1.08996 * 117.49831 * 214.97993 * 26 24 2 52 52 H 1.08999 * 117.50156 * 0.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 1.5503 2.1350 -1.1995 5 6 2.0217 3.5258 -1.2337 6 6 1.4921 4.2129 -2.4941 7 6 -0.0321 4.4706 -2.3849 8 6 -0.2873 5.6420 -3.3557 9 6 1.0505 6.3869 -3.5086 10 6 2.0727 5.6429 -2.6248 11 7 2.0184 -0.6906 -1.1961 12 6 3.3384 -0.7180 -1.4668 13 8 4.1298 -0.2537 -0.6735 14 6 3.8311 -1.3254 -2.7549 15 16 5.6362 -1.2122 -2.8238 16 6 5.9312 -1.9726 -4.3856 17 1 5.1020 -2.3367 -4.9741 18 6 7.2291 -2.1038 -4.8595 19 7 7.4495 -2.6724 -6.0261 20 14 8.6633 -1.4748 -3.8413 21 1 9.1460 -2.5560 -2.9451 22 1 9.7638 -1.0522 -4.7443 23 1 8.2202 -0.3160 -3.0250 24 6 2.0401 -0.7212 1.2493 25 6 2.9599 -1.9263 1.0432 26 6 1.5175 -2.1350 1.5116 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 0.8899 32 1 0.5438 2.0925 -1.2559 33 1 3.1115 3.5400 -1.2425 34 1 1.6585 4.0544 -0.3524 35 1 1.7206 3.6207 -3.3802 36 1 -0.2990 4.7538 -1.3668 37 1 -0.5921 3.5887 -2.6957 38 1 -1.0422 6.3112 -2.9431 39 1 -0.6150 5.2609 -4.3229 40 1 1.3723 6.3665 -4.5499 41 1 0.9445 7.4180 -3.1710 42 1 3.0483 5.6156 -3.1103 43 1 2.1478 6.1174 -1.6464 44 1 1.3917 -1.1282 -1.7934 45 1 3.5311 -2.3724 -2.8010 46 1 3.4005 -0.7866 -3.5988 47 1 8.3566 -2.7637 -6.3574 48 1 2.2291 -0.0859 2.1146 49 1 3.2013 -2.2057 0.0177 50 1 3.7538 -2.0842 1.7732 51 1 1.3632 -2.4300 2.5495 52 1 0.8108 -2.5516 0.7940 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318677679.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:09 Heat of formation + Delta-G solvation = -22.725291 kcal Electronic energy + Delta-G solvation = -28407.025565 eV Core-core repulsion = 24725.830735 eV Total energy + Delta-G solvation = -3681.194830 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.45309 -38.65075 -37.19220 -35.71708 -33.67306 -32.38874 -31.49034 -29.46667 -28.86399 -28.57517 -26.28479 -25.54798 -23.95469 -22.16988 -22.05496 -20.89191 -20.38949 -20.10469 -19.08285 -17.78587 -16.80473 -16.36326 -16.23762 -15.98057 -15.07796 -15.04149 -14.92019 -14.64819 -14.46305 -13.77491 -13.69662 -13.55796 -13.49700 -13.23522 -13.02357 -12.76157 -12.57162 -12.50086 -12.29214 -11.88659 -11.66338 -11.45674 -11.29142 -11.21522 -11.17463 -11.07443 -10.97087 -10.88568 -10.73607 -10.67878 -10.62682 -10.51595 -10.23754 -10.05477 -9.80301 -9.11326 -8.95738 -8.72374 -8.42195 -8.39266 -6.83455 -6.24258 -3.94234 2.86298 3.17708 3.35371 3.39955 3.53904 3.73659 3.80499 4.10289 4.37360 4.42267 4.44159 4.58507 4.72198 4.76219 4.81057 4.87175 5.09251 5.11162 5.15034 5.17016 5.24142 5.26136 5.30301 5.35762 5.38590 5.44117 5.46340 5.52902 5.58041 5.61023 5.65750 5.67512 5.73374 5.76026 5.84326 5.87525 5.89958 5.93724 6.02640 6.06293 6.14364 6.15934 6.17661 6.20753 6.29782 6.34093 6.78993 6.99526 7.38558 7.84301 7.99121 8.46952 8.72619 9.22397 10.85211 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008080 B = 0.003611 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3464.629327 B = 7752.595814 C =10350.135133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 C 0.047 3.953 4 N -0.679 5.679 5 C 0.070 3.930 6 C -0.091 4.091 7 C -0.121 4.121 8 C -0.124 4.124 9 C -0.124 4.124 10 C -0.120 4.120 11 N -0.718 5.718 12 C 0.542 3.458 13 O -0.513 6.513 14 C -0.124 4.124 15 S -0.140 6.140 16 C -0.519 4.519 17 H 0.087 0.913 18 C 0.095 3.905 19 N -0.882 5.882 20 Si 0.856 3.144 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.235 1.235 24 C -0.155 4.155 25 C -0.149 4.149 26 C -0.185 4.185 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.029 0.971 32 H 0.332 0.668 33 H 0.074 0.926 34 H 0.024 0.976 35 H 0.087 0.913 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.396 0.604 45 H 0.090 0.910 46 H 0.096 0.904 47 H 0.270 0.730 48 H 0.103 0.897 49 H 0.099 0.901 50 H 0.089 0.911 51 H 0.088 0.912 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.377 12.029 12.120 25.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.128 3.872 3 C -0.082 4.082 4 N -0.310 5.310 5 C -0.059 4.059 6 C -0.109 4.109 7 C -0.159 4.159 8 C -0.162 4.162 9 C -0.162 4.162 10 C -0.158 4.158 11 N -0.371 5.371 12 C 0.329 3.671 13 O -0.387 6.387 14 C -0.275 4.275 15 S 0.087 5.913 16 C -0.667 4.667 17 H 0.105 0.895 18 C -0.113 4.113 19 N -0.519 5.519 20 Si 0.681 3.319 21 H -0.193 1.193 22 H -0.201 1.201 23 H -0.159 1.159 24 C -0.174 4.174 25 C -0.186 4.186 26 C -0.222 4.222 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.122 0.878 31 H 0.047 0.953 32 H 0.151 0.849 33 H 0.092 0.908 34 H 0.042 0.958 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.230 0.770 45 H 0.108 0.892 46 H 0.114 0.886 47 H 0.080 0.920 48 H 0.121 0.879 49 H 0.118 0.882 50 H 0.107 0.893 51 H 0.106 0.894 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.419 12.544 12.890 25.039 hybrid contribution -1.044 -0.196 -0.358 1.121 sum -18.463 12.348 12.532 25.503 Atomic orbital electron populations 1.22063 0.93812 1.02927 1.02477 1.19632 0.92810 0.90855 0.83950 1.22412 1.03617 0.92066 0.90140 1.60366 1.15489 1.14563 1.40614 1.21914 1.00742 0.87603 0.95629 1.22180 0.94367 0.95573 0.98813 1.22445 0.96297 0.98007 0.99116 1.22113 0.97322 0.97120 0.99618 1.22116 0.95036 0.98910 1.00154 1.22370 0.98698 0.94957 0.99766 1.45880 1.07588 1.57442 1.26231 1.19912 0.81741 0.78364 0.87116 1.90650 1.54543 1.45397 1.48155 1.23294 1.02822 1.03542 0.97821 1.84712 0.98438 1.80023 1.28176 1.22347 0.97128 1.44130 1.03107 0.89529 1.24708 0.98310 0.93778 0.94540 1.69946 1.21834 1.41991 1.18160 0.86737 0.82491 0.81635 0.80993 1.19302 1.20061 1.15906 1.22487 1.05523 0.90646 0.98779 1.22983 0.92188 1.00446 1.03007 1.22991 0.98563 0.99082 1.01578 0.91654 0.91596 0.91302 0.87784 0.95325 0.84921 0.90770 0.95764 0.89458 0.92154 0.91671 0.92247 0.91899 0.91824 0.92150 0.91383 0.91835 0.77035 0.89186 0.88616 0.92036 0.87878 0.88242 0.89289 0.89389 0.89179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 8.03 37.16 0.30 -0.89 16 2 C 0.21 2.31 0.66 -131.82 -0.09 2.22 16 3 C 0.05 0.57 4.33 -3.82 -0.02 0.55 16 4 N -0.68 -7.47 6.31 -113.78 -0.72 -8.19 16 5 C 0.07 0.75 5.18 -3.82 -0.02 0.73 16 6 C -0.09 -0.88 3.10 -88.58 -0.28 -1.16 16 7 C -0.12 -0.98 5.72 -25.03 -0.14 -1.12 16 8 C -0.12 -0.96 6.80 -25.61 -0.17 -1.14 16 9 C -0.12 -1.01 6.80 -25.62 -0.17 -1.19 16 10 C -0.12 -1.09 6.27 -25.07 -0.16 -1.24 16 11 N -0.72 -8.87 4.34 -47.61 -0.21 -9.08 16 12 C 0.54 9.21 5.11 -10.99 -0.06 9.16 16 13 O -0.51 -10.20 11.80 5.55 0.07 -10.13 16 14 C -0.12 -2.41 6.16 36.00 0.22 -2.19 16 15 S -0.14 -3.54 18.55 -107.50 -1.99 -5.53 16 16 C -0.52 -15.10 10.04 30.94 0.31 -14.79 16 17 H 0.09 2.64 8.03 -52.49 -0.42 2.21 16 18 C 0.09 2.80 5.50 -17.43 -0.10 2.71 16 19 N -0.88 -26.91 13.97 55.49 0.78 -26.13 16 20 Si 0.86 22.01 27.74 -169.99 -4.71 17.30 16 21 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 24 C -0.15 -1.78 4.81 -90.62 -0.44 -2.22 16 25 C -0.15 -2.03 8.28 -26.69 -0.22 -2.25 16 26 C -0.19 -1.92 9.68 -26.69 -0.26 -2.18 16 27 H 0.06 0.46 6.57 -51.93 -0.34 0.12 16 28 H 0.07 0.47 6.92 -51.93 -0.36 0.11 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.10 1.65 5.96 -51.93 -0.31 1.34 16 31 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.33 3.07 6.17 -39.29 -0.24 2.83 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.02 0.24 8.00 -51.93 -0.42 -0.17 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.47 7.95 -51.93 -0.41 0.06 16 37 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.55 8.05 -51.93 -0.42 0.13 16 44 H 0.40 4.08 8.48 -40.82 -0.35 3.73 16 45 H 0.09 1.65 8.14 -51.91 -0.42 1.22 16 46 H 0.10 1.81 8.14 -51.92 -0.42 1.39 16 47 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 48 H 0.10 1.16 8.06 -51.93 -0.42 0.74 16 49 H 0.10 1.57 5.12 -51.93 -0.27 1.30 16 50 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 51 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 52 H 0.09 0.86 7.21 -51.93 -0.37 0.49 16 LS Contribution 408.90 15.07 6.16 6.16 Total: -1.00 -32.18 408.90 -11.31 -43.49 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -9.40 Total: 7.10 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -1.28 Total: -14.99 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: -0.15 Total: -43.40 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.07 Total: -10.13 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.30 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.18 -11.31 -43.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318677679.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.769 kcal (2) G-P(sol) polarization free energy of solvation -32.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds