Wall clock time and date at job start Sat Apr 11 2020 06:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46791 * 2 1 4 4 N 1.46903 * 109.46845 * 299.99805 * 3 2 1 5 5 C 1.46897 * 110.99729 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.47009 * 180.02562 * 5 4 3 7 7 C 1.54960 * 110.92256 * 71.53807 * 6 5 4 8 8 C 1.54267 * 104.16076 * 156.29698 * 7 6 5 9 9 C 1.53877 * 106.63707 * 336.44304 * 8 7 6 10 10 C 1.54260 * 106.59967 * 359.97438 * 9 8 7 11 11 N 1.46495 * 109.47143 * 240.00018 * 2 1 3 12 12 C 1.34776 * 120.00035 * 174.51277 * 11 2 1 13 13 O 1.21286 * 119.99941 * 5.20213 * 12 11 2 14 14 C 1.50697 * 120.00296 * 185.19866 * 12 11 2 15 15 S 1.80996 * 109.47515 * 180.02562 * 14 12 11 16 16 C 1.76198 * 100.00417 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99566 * 359.97438 * 16 15 14 18 18 C 1.38794 * 120.00051 * 179.97438 * 16 15 14 19 19 N 1.31633 * 119.99964 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 120.00242 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47522 * 90.00061 * 20 18 16 22 22 H 1.48498 * 109.47196 * 209.99950 * 20 18 16 23 23 H 1.48505 * 109.47057 * 329.99767 * 20 18 16 24 24 C 1.53003 * 109.47156 * 119.99500 * 2 1 3 25 25 C 1.53003 * 117.49440 * 122.33120 * 24 2 1 26 26 C 1.53000 * 117.49663 * 53.67153 * 24 2 1 27 27 H 1.08994 * 109.46854 * 60.00614 * 1 2 3 28 28 H 1.09001 * 109.46542 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46865 * 299.99935 * 1 2 3 30 30 H 1.09000 * 109.46640 * 180.02562 * 3 2 1 31 31 H 1.08992 * 109.47293 * 59.99864 * 3 2 1 32 32 H 1.00895 * 111.00214 * 56.05042 * 4 3 2 33 33 H 1.08996 * 109.47751 * 60.00232 * 5 4 3 34 34 H 1.09003 * 109.47427 * 299.99576 * 5 4 3 35 35 H 1.09002 * 110.67149 * 308.23035 * 6 5 4 36 36 H 1.08997 * 110.48060 * 37.64049 * 7 6 5 37 37 H 1.08998 * 110.53259 * 274.97393 * 7 6 5 38 38 H 1.08999 * 110.03246 * 217.13880 * 8 7 6 39 39 H 1.09000 * 110.03581 * 95.75063 * 8 7 6 40 40 H 1.09008 * 110.02970 * 119.26168 * 9 8 7 41 41 H 1.09005 * 110.03586 * 240.63957 * 9 8 7 42 42 H 1.09004 * 110.48586 * 142.28883 * 10 9 8 43 43 H 1.08997 * 110.48356 * 264.79406 * 10 9 8 44 44 H 0.97001 * 120.00114 * 354.51055 * 11 2 1 45 45 H 1.09007 * 109.47249 * 300.00166 * 14 12 11 46 46 H 1.08997 * 109.47363 * 60.00059 * 14 12 11 47 47 H 0.97002 * 119.99831 * 179.97438 * 19 18 16 48 48 H 1.08995 * 115.54951 * 268.00122 * 24 2 1 49 49 H 1.08990 * 117.50144 * 359.97438 * 25 24 2 50 50 H 1.09004 * 117.49744 * 145.02476 * 25 24 2 51 51 H 1.08996 * 117.49831 * 214.97993 * 26 24 2 52 52 H 1.08999 * 117.50156 * 0.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 1.5503 2.1350 -1.1995 5 6 2.0217 3.5258 -1.2337 6 6 1.4921 4.2129 -2.4941 7 6 -0.0321 4.4706 -2.3849 8 6 -0.2873 5.6420 -3.3557 9 6 1.0505 6.3869 -3.5086 10 6 2.0727 5.6429 -2.6248 11 7 2.0184 -0.6906 -1.1961 12 6 3.3384 -0.7180 -1.4668 13 8 4.1298 -0.2537 -0.6735 14 6 3.8311 -1.3254 -2.7549 15 16 5.6362 -1.2122 -2.8238 16 6 5.9312 -1.9726 -4.3856 17 1 5.1020 -2.3367 -4.9741 18 6 7.2291 -2.1038 -4.8595 19 7 7.4495 -2.6724 -6.0261 20 14 8.6633 -1.4748 -3.8413 21 1 9.1460 -2.5560 -2.9451 22 1 9.7638 -1.0522 -4.7443 23 1 8.2202 -0.3160 -3.0250 24 6 2.0401 -0.7212 1.2493 25 6 2.9599 -1.9263 1.0432 26 6 1.5175 -2.1350 1.5116 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 0.8899 32 1 0.5438 2.0925 -1.2559 33 1 3.1115 3.5400 -1.2425 34 1 1.6585 4.0544 -0.3524 35 1 1.7206 3.6207 -3.3802 36 1 -0.2990 4.7538 -1.3668 37 1 -0.5921 3.5887 -2.6957 38 1 -1.0422 6.3112 -2.9431 39 1 -0.6150 5.2609 -4.3229 40 1 1.3723 6.3665 -4.5499 41 1 0.9445 7.4180 -3.1710 42 1 3.0483 5.6156 -3.1103 43 1 2.1478 6.1174 -1.6464 44 1 1.3917 -1.1282 -1.7934 45 1 3.5311 -2.3724 -2.8010 46 1 3.4005 -0.7866 -3.5988 47 1 8.3566 -2.7637 -6.3574 48 1 2.2291 -0.0859 2.1146 49 1 3.2013 -2.2057 0.0177 50 1 3.7538 -2.0842 1.7732 51 1 1.3632 -2.4300 2.5495 52 1 0.8108 -2.5516 0.7940 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318677679.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:06 Heat of formation + Delta-G solvation = -42.947037 kcal Electronic energy + Delta-G solvation = -28407.902445 eV Core-core repulsion = 24725.830735 eV Total energy + Delta-G solvation = -3682.071711 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.57033 -39.41931 -38.36180 -36.59167 -34.74581 -34.65192 -32.56055 -30.45055 -29.77101 -29.52006 -27.84367 -27.08337 -24.78073 -23.10174 -22.98529 -22.14313 -21.07011 -20.85967 -20.13526 -19.84215 -17.78662 -17.60253 -17.42539 -17.09189 -16.75449 -16.19613 -15.83369 -15.78609 -15.66786 -15.27220 -14.93270 -14.64645 -14.55889 -14.30903 -14.17013 -13.96861 -13.54315 -13.37886 -13.30003 -13.25874 -13.03103 -12.85590 -12.55741 -12.51660 -12.17436 -12.10521 -11.99273 -11.92997 -11.86365 -11.69394 -11.51275 -11.44192 -11.24854 -11.19710 -11.16043 -11.03122 -10.50446 -10.40053 -9.86565 -9.27868 -8.94887 -8.51198 -6.19895 1.02376 1.30201 1.47013 1.58723 1.81046 2.24571 2.37569 2.75789 2.87090 2.90386 3.22390 3.71290 3.73034 3.82774 3.86804 3.95537 3.95605 4.08130 4.23425 4.29416 4.31121 4.36120 4.45127 4.51338 4.56018 4.57156 4.59797 4.63204 4.76472 4.80651 4.82820 4.83393 4.87842 4.92628 4.96012 5.07256 5.11110 5.13393 5.14944 5.25216 5.27613 5.30349 5.33922 5.35444 5.51747 5.53083 5.71246 5.73976 6.08475 6.11601 6.61430 6.70367 6.94344 7.44864 8.61634 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008080 B = 0.003611 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3464.629327 B = 7752.595814 C =10350.135133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.214 3.786 3 C 0.053 3.947 4 N -0.686 5.686 5 C 0.075 3.925 6 C -0.089 4.089 7 C -0.114 4.114 8 C -0.124 4.124 9 C -0.124 4.124 10 C -0.121 4.121 11 N -0.697 5.697 12 C 0.549 3.451 13 O -0.544 6.544 14 C -0.112 4.112 15 S -0.168 6.168 16 C -0.529 4.529 17 H 0.058 0.942 18 C 0.045 3.955 19 N -0.919 5.919 20 Si 0.915 3.085 21 H -0.262 1.262 22 H -0.259 1.259 23 H -0.238 1.238 24 C -0.153 4.153 25 C -0.182 4.182 26 C -0.154 4.154 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.346 0.654 33 H 0.044 0.956 34 H 0.037 0.963 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.069 0.931 44 H 0.410 0.590 45 H 0.102 0.898 46 H 0.101 0.899 47 H 0.276 0.724 48 H 0.106 0.894 49 H 0.075 0.925 50 H 0.074 0.926 51 H 0.104 0.896 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.135 12.896 13.758 29.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.128 3.872 3 C -0.078 4.078 4 N -0.319 5.319 5 C -0.054 4.054 6 C -0.107 4.107 7 C -0.151 4.151 8 C -0.161 4.161 9 C -0.162 4.162 10 C -0.160 4.160 11 N -0.349 5.349 12 C 0.334 3.666 13 O -0.421 6.421 14 C -0.264 4.264 15 S 0.059 5.941 16 C -0.677 4.677 17 H 0.076 0.924 18 C -0.160 4.160 19 N -0.557 5.557 20 Si 0.737 3.263 21 H -0.187 1.187 22 H -0.183 1.183 23 H -0.162 1.162 24 C -0.173 4.173 25 C -0.220 4.220 26 C -0.191 4.191 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.167 0.833 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.246 0.754 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.086 0.914 48 H 0.124 0.876 49 H 0.094 0.906 50 H 0.093 0.907 51 H 0.122 0.878 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -20.233 13.404 14.518 28.281 hybrid contribution -0.292 -0.474 -0.858 1.023 sum -20.525 12.929 13.660 27.839 Atomic orbital electron populations 1.22047 0.90410 1.04247 1.03843 1.19840 0.95104 0.89670 0.82591 1.22248 1.01134 0.93207 0.91163 1.60287 1.16527 1.14679 1.40373 1.21823 0.99013 0.87854 0.96692 1.22100 0.96035 0.95384 0.97230 1.22402 0.94512 0.98428 0.99800 1.22123 0.97229 0.97132 0.99634 1.22124 0.94989 0.99452 0.99644 1.22380 0.98447 0.94890 1.00245 1.45677 1.05926 1.56478 1.26864 1.19437 0.83192 0.78149 0.85817 1.90655 1.55769 1.46924 1.48783 1.23295 0.98224 1.04886 0.99956 1.84600 1.04201 1.79591 1.25721 1.22505 0.96584 1.44092 1.04491 0.92370 1.25557 1.00844 0.93973 0.95594 1.70024 1.22898 1.43168 1.19614 0.85863 0.79659 0.81083 0.79727 1.18674 1.18346 1.16169 1.22560 1.04653 0.90998 0.99105 1.22856 0.94021 1.03599 1.01484 1.23064 0.95846 0.97423 1.02736 0.90629 0.90318 0.89613 0.92009 0.93710 0.83302 0.93743 0.94469 0.91704 0.91204 0.91113 0.90947 0.91956 0.92300 0.91104 0.92690 0.91215 0.75431 0.87945 0.88045 0.91422 0.87611 0.90639 0.90746 0.87756 0.87723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.03 71.98 0.58 -1.07 16 2 C 0.21 4.12 0.66 3.61 0.00 4.12 16 3 C 0.05 1.19 4.33 86.30 0.37 1.56 16 4 N -0.69 -14.14 6.31 -513.88 -3.24 -17.39 16 5 C 0.08 1.58 5.18 86.31 0.45 2.03 16 6 C -0.09 -1.67 3.10 -9.48 -0.03 -1.69 16 7 C -0.11 -1.59 5.72 31.69 0.18 -1.40 16 8 C -0.12 -1.65 6.80 31.32 0.21 -1.44 16 9 C -0.12 -1.87 6.80 31.32 0.21 -1.65 16 10 C -0.12 -2.15 6.27 31.67 0.20 -1.95 16 11 N -0.70 -16.15 4.34 -422.91 -1.84 -17.99 16 12 C 0.55 18.61 5.11 87.66 0.45 19.06 16 13 O -0.54 -22.10 11.80 -3.05 -0.04 -22.13 16 14 C -0.11 -4.41 6.16 71.23 0.44 -3.97 16 15 S -0.17 -8.65 18.55 -56.49 -1.05 -9.69 16 16 C -0.53 -31.59 10.04 67.95 0.68 -30.90 16 17 H 0.06 3.68 8.03 -2.91 -0.02 3.66 16 18 C 0.05 2.72 5.50 84.86 0.47 3.19 16 19 N -0.92 -57.04 13.97 21.65 0.30 -56.73 16 20 Si 0.91 46.04 27.74 68.60 1.90 47.94 16 21 H -0.26 -12.84 7.11 99.48 0.71 -12.13 16 22 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.24 -11.98 6.74 99.48 0.67 -11.31 16 24 C -0.15 -3.25 4.81 -10.79 -0.05 -3.30 16 25 C -0.18 -4.87 8.28 30.62 0.25 -4.62 16 26 C -0.15 -2.75 9.68 30.62 0.30 -2.45 16 27 H 0.07 0.73 6.57 -2.39 -0.02 0.71 16 28 H 0.08 0.73 6.92 -2.39 -0.02 0.72 16 29 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 1.99 5.96 -2.39 -0.01 1.97 16 31 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.35 5.42 6.17 -89.70 -0.55 4.87 16 33 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.04 0.68 8.00 -2.39 -0.02 0.66 16 35 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.07 0.87 7.95 -2.39 -0.02 0.85 16 37 H 0.07 0.92 8.08 -2.39 -0.02 0.90 16 38 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 40 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 41 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.07 1.14 8.05 -2.39 -0.02 1.12 16 44 H 0.41 7.41 8.48 -92.71 -0.79 6.63 16 45 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 46 H 0.10 3.85 8.14 -2.40 -0.02 3.83 16 47 H 0.28 15.85 8.31 -92.71 -0.77 15.08 16 48 H 0.11 2.19 8.06 -2.39 -0.02 2.17 16 49 H 0.08 2.39 5.12 -2.39 -0.01 2.37 16 50 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 51 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 52 H 0.10 1.59 7.21 -2.39 -0.02 1.57 16 Total: -1.00 -72.48 408.90 0.28 -72.20 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: -0.47 Total: 28.28 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: 4.71 Total: -24.49 kcal Atomic # 7 Polarization: -87.33 SS G_CDS: -4.78 Total: -92.11 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.04 Total: -22.13 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.90 Total: 47.94 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.05 Total: -9.69 kcal Total: -72.48 0.28 -72.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318677679.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.256 kcal (2) G-P(sol) polarization free energy of solvation -72.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds