Wall clock time and date at job start Sat Apr 11 2020 06:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47081 * 2 1 4 4 S 1.81403 * 109.46727 * 179.97438 * 3 2 1 5 5 C 1.81402 * 103.00010 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47316 * 180.02562 * 5 4 3 7 7 O 1.21280 * 119.99682 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99845 * 180.02562 * 6 5 4 9 9 C 1.46921 * 120.63456 * 359.72028 * 8 6 5 10 10 C 1.53623 * 108.54721 * 126.36744 * 9 8 6 11 11 C 1.53048 * 109.23973 * 54.85947 * 10 9 8 12 12 C 1.52992 * 109.46026 * 178.49448 * 11 10 9 13 13 H 1.08996 * 110.89054 * 60.76413 * 12 11 10 14 14 C 1.55162 * 111.00221 * 296.88745 * 12 11 10 15 15 C 1.54373 * 102.92062 * 206.45508 * 14 12 11 16 16 N 1.47021 * 107.28857 * 22.13742 * 15 14 12 17 17 C 1.36938 * 125.65201 * 181.06087 * 16 15 14 18 18 H 1.07999 * 120.00586 * 173.97729 * 17 16 15 19 19 C 1.38816 * 119.99704 * 353.97597 * 17 16 15 20 20 N 1.31622 * 119.99986 * 6.85116 * 19 17 16 21 21 Si 1.86794 * 120.00224 * 186.84817 * 19 17 16 22 22 H 1.48500 * 109.47106 * 94.98407 * 21 19 17 23 23 H 1.48497 * 109.47449 * 214.98448 * 21 19 17 24 24 H 1.48499 * 109.47102 * 334.98694 * 21 19 17 25 25 C 1.47430 * 108.70232 * 1.08946 * 16 15 14 26 26 C 1.53040 * 109.53527 * 298.51249 * 11 10 9 27 27 C 1.46931 * 120.62976 * 179.97438 * 8 6 5 28 28 H 1.09002 * 109.46623 * 300.00093 * 1 2 3 29 29 H 1.09004 * 109.46510 * 59.99510 * 1 2 3 30 30 H 1.09000 * 109.47330 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46623 * 239.99907 * 2 1 3 32 32 H 1.08995 * 109.46657 * 120.00214 * 2 1 3 33 33 H 1.09002 * 109.47469 * 60.00425 * 3 2 1 34 34 H 1.08995 * 109.47551 * 299.99667 * 3 2 1 35 35 H 1.09000 * 109.46808 * 300.00385 * 5 4 3 36 36 H 1.09002 * 109.46905 * 59.99852 * 5 4 3 37 37 H 1.09003 * 109.58620 * 246.20379 * 9 8 6 38 38 H 1.09003 * 109.58459 * 6.62500 * 9 8 6 39 39 H 1.08994 * 109.63283 * 294.87007 * 10 9 8 40 40 H 1.08999 * 109.46216 * 174.73982 * 10 9 8 41 41 H 1.08999 * 109.45682 * 58.52970 * 11 10 9 42 42 H 1.09003 * 110.72058 * 324.78426 * 14 12 11 43 43 H 1.08997 * 110.72256 * 88.06003 * 14 12 11 44 44 H 1.08996 * 109.84566 * 262.73002 * 15 14 12 45 45 H 1.08996 * 110.03304 * 141.64692 * 15 14 12 46 46 H 0.96995 * 120.00095 * 180.02562 * 20 19 17 47 47 H 1.09000 * 110.36439 * 217.02994 * 25 16 15 48 48 H 1.09003 * 110.45699 * 94.76273 * 25 16 15 49 49 H 1.09003 * 109.49565 * 301.41289 * 26 11 10 50 50 H 1.08997 * 109.52647 * 181.33621 * 26 11 10 51 51 H 1.08996 * 109.58635 * 353.37258 * 27 8 6 52 52 H 1.08999 * 109.58606 * 113.79821 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 3.8541 1.4424 0.0008 5 6 4.2623 3.2099 0.0015 6 6 5.7597 3.3797 0.0015 7 8 6.4805 2.4043 0.0016 8 7 6.2977 4.6154 0.0025 9 6 5.4375 5.8064 -0.0026 10 6 5.8464 6.7095 1.1710 11 6 7.3429 7.0151 1.0746 12 6 7.7481 7.9449 2.2201 13 1 7.5587 7.4769 3.1861 14 6 7.0200 9.3107 2.1117 15 6 7.9865 10.2752 2.8319 16 7 9.3194 9.6553 2.8098 17 6 10.4546 10.1834 3.3646 18 1 11.3670 9.6059 3.3804 19 6 10.4325 11.4611 3.9066 20 7 9.2934 12.1125 4.0101 21 14 12.0192 12.2562 4.4892 22 1 12.5725 13.1084 3.4064 23 1 11.7440 13.0921 5.6853 24 1 13.0026 11.2000 4.8392 25 6 9.2317 8.3711 2.0910 26 6 8.1387 5.7114 1.1705 27 6 7.7557 4.7970 0.0031 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6768 1.9564 0.8900 34 1 1.6768 1.9563 -0.8899 35 1 3.8437 3.6797 -0.8885 36 1 3.8429 3.6792 0.8914 37 1 5.5637 6.3442 -0.9423 38 1 4.3961 5.5055 0.1116 39 1 5.6386 6.2023 2.1131 40 1 5.2814 7.6406 1.1267 41 1 7.5538 7.5000 0.1215 42 1 6.8945 9.5991 1.0680 43 1 6.0574 9.2762 2.6218 44 1 7.6630 10.4222 3.8623 45 1 8.0145 11.2329 2.3121 46 1 9.2780 13.0055 4.3885 47 1 9.8813 7.6303 2.5571 48 1 9.4988 8.5025 1.0424 49 1 7.9092 5.2135 2.1127 50 1 9.2053 5.9314 1.1257 51 1 8.2444 3.8299 0.1212 52 1 8.0674 5.2540 -0.9361 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323628854.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:18 Heat of formation + Delta-G solvation = -30.042048 kcal Electronic energy + Delta-G solvation = -27379.581273 eV Core-core repulsion = 23698.069164 eV Total energy + Delta-G solvation = -3681.512109 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.42601 -38.46031 -36.65766 -35.12051 -33.83127 -32.15900 -31.50282 -30.01987 -29.14285 -27.79658 -27.50920 -25.25480 -23.73059 -23.29479 -22.17182 -21.13223 -19.89909 -19.55834 -19.23470 -17.53670 -16.84825 -16.79105 -16.16011 -15.76214 -15.67490 -15.03167 -14.51908 -14.44021 -14.22080 -14.16806 -14.02702 -13.95855 -13.62077 -13.46577 -13.10112 -12.86389 -12.64869 -12.47518 -12.24012 -12.03334 -11.91187 -11.76766 -11.62758 -11.36634 -11.30016 -11.09557 -11.05018 -10.88865 -10.72893 -10.57312 -10.24532 -10.14720 -10.08284 -9.85564 -9.79710 -9.72750 -9.58117 -8.83401 -8.56339 -7.97142 -6.79459 -5.70984 -3.02811 1.08495 2.18283 2.32631 2.77301 3.40603 3.45953 3.47764 4.10195 4.34537 4.39781 4.49666 4.54320 4.57693 4.75293 4.76329 4.79672 4.81454 4.94077 4.97690 5.12766 5.13603 5.19403 5.22784 5.37714 5.47774 5.52835 5.56012 5.57228 5.59970 5.63379 5.67532 5.75226 5.79882 5.87556 5.96185 5.99428 6.11477 6.16380 6.31960 6.38418 6.44915 6.56571 6.61036 6.77444 7.00792 7.10508 7.58197 7.66081 7.84395 7.87374 8.28602 9.24178 9.85129 10.52209 11.41214 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.030277 B = 0.001780 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.582902 B =15725.361427 C =16242.869059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.106 4.106 4 S -0.188 6.188 5 C -0.126 4.126 6 C 0.531 3.469 7 O -0.523 6.523 8 N -0.606 5.606 9 C 0.105 3.895 10 C -0.129 4.129 11 C -0.073 4.073 12 C -0.096 4.096 13 H 0.071 0.929 14 C -0.138 4.138 15 C 0.176 3.824 16 N -0.607 5.607 17 C -0.228 4.228 18 H 0.077 0.923 19 C -0.008 4.008 20 N -0.921 5.921 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.142 3.858 26 C -0.129 4.129 27 C 0.113 3.887 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.039 0.961 45 H 0.043 0.957 46 H 0.251 0.749 47 H 0.035 0.965 48 H 0.017 0.983 49 H 0.066 0.934 50 H 0.081 0.919 51 H 0.092 0.908 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.941 -18.923 -10.643 28.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.146 4.146 3 C -0.255 4.255 4 S 0.039 5.961 5 C -0.277 4.277 6 C 0.317 3.683 7 O -0.399 6.399 8 N -0.340 5.340 9 C -0.018 4.018 10 C -0.167 4.167 11 C -0.092 4.092 12 C -0.116 4.116 13 H 0.089 0.911 14 C -0.176 4.176 15 C 0.051 3.949 16 N -0.333 5.333 17 C -0.357 4.357 18 H 0.095 0.905 19 C -0.205 4.205 20 N -0.568 5.568 21 Si 0.740 3.260 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.206 1.206 25 C 0.016 3.984 26 C -0.167 4.167 27 C -0.009 4.009 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.053 0.947 48 H 0.034 0.966 49 H 0.085 0.915 50 H 0.100 0.900 51 H 0.110 0.890 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.770 -20.093 -10.521 28.207 hybrid contribution -0.111 1.907 0.389 1.949 sum -16.881 -18.186 -10.132 26.802 Atomic orbital electron populations 1.21768 0.94622 1.02198 1.02064 1.21227 0.96035 0.93840 1.03514 1.23581 0.95178 1.01791 1.04909 1.87555 1.04529 1.05992 1.98048 1.23532 0.97981 0.99285 1.06906 1.19609 0.88802 0.83164 0.76691 1.90742 1.61927 1.38047 1.49187 1.48063 1.07708 1.05185 1.73037 1.21953 0.93858 0.86143 0.99838 1.22057 0.97336 0.99526 0.97790 1.21094 0.93559 0.95029 0.99567 1.22349 0.97410 0.94689 0.97126 0.91077 1.22901 0.98638 0.95896 1.00157 1.21145 0.82657 0.93083 0.97995 1.44483 1.05925 1.18916 1.63969 1.19077 0.88187 0.97156 1.31231 0.90512 1.24816 0.97100 0.97043 1.01495 1.69986 1.23231 1.13175 1.50442 0.86134 0.82724 0.79341 0.77828 1.21651 1.21798 1.20640 1.21548 0.93044 0.88824 0.94960 1.21987 1.01126 0.95442 0.98177 1.21689 0.78898 1.01333 0.98974 0.92473 0.92526 0.92071 0.90943 0.90896 0.90075 0.90134 0.87336 0.87193 0.90844 0.90197 0.91474 0.90131 0.90955 0.92643 0.92554 0.94237 0.93878 0.93841 0.94723 0.96564 0.91546 0.90003 0.89012 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.91 37.16 0.37 -0.27 16 2 C -0.11 -0.62 5.94 -26.73 -0.16 -0.78 16 3 C -0.11 -0.67 5.94 37.16 0.22 -0.45 16 4 S -0.19 -1.87 20.87 -107.50 -2.24 -4.12 16 5 C -0.13 -1.05 4.77 36.00 0.17 -0.88 16 6 C 0.53 6.21 7.72 -10.99 -0.08 6.12 16 7 O -0.52 -8.18 15.28 5.56 0.08 -8.10 16 8 N -0.61 -6.22 2.97 -172.53 -0.51 -6.73 16 9 C 0.11 0.83 6.37 -3.49 -0.02 0.80 16 10 C -0.13 -1.24 5.21 -26.38 -0.14 -1.38 16 11 C -0.07 -0.88 1.65 -90.58 -0.15 -1.03 16 12 C -0.10 -1.55 2.56 -88.48 -0.23 -1.78 16 13 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 14 C -0.14 -2.41 5.42 -24.87 -0.13 -2.55 16 15 C 0.18 4.24 5.38 -3.04 -0.02 4.22 16 16 N -0.61 -15.50 3.39 -170.04 -0.58 -16.08 16 17 C -0.23 -6.42 10.26 -15.06 -0.15 -6.58 16 18 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 19 C -0.01 -0.24 5.48 -17.43 -0.10 -0.33 16 20 N -0.92 -27.21 10.36 55.49 0.57 -26.64 16 21 Si 0.91 22.24 29.56 -169.99 -5.02 17.21 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 25 C 0.14 2.86 5.80 -2.53 -0.01 2.85 16 26 C -0.13 -1.50 5.21 -26.64 -0.14 -1.64 16 27 C 0.11 1.23 6.43 -3.73 -0.02 1.21 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.11 0.67 7.93 -51.92 -0.41 0.26 16 36 H 0.11 0.73 7.70 -51.92 -0.40 0.33 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.45 5.93 -51.93 -0.31 0.14 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.74 7.32 -51.93 -0.38 0.36 16 41 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 42 H 0.05 0.91 8.04 -51.93 -0.42 0.49 16 43 H 0.06 0.89 8.09 -51.93 -0.42 0.47 16 44 H 0.04 1.06 7.54 -51.93 -0.39 0.67 16 45 H 0.04 1.16 7.36 -51.93 -0.38 0.77 16 46 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 47 H 0.03 0.69 8.03 -51.93 -0.42 0.27 16 48 H 0.02 0.33 8.02 -51.93 -0.42 -0.09 16 49 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 50 H 0.08 0.98 7.32 -51.93 -0.38 0.60 16 51 H 0.09 1.12 7.01 -51.93 -0.36 0.75 16 52 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 410.10 15.07 6.18 6.18 Total: -1.00 -33.25 410.10 -11.85 -45.10 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -9.73 Total: -4.36 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -0.60 Total: -2.47 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: -0.51 Total: -49.45 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.08 Total: -8.10 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Atomic # 16 Polarization: -1.87 SS G_CDS: -2.24 Total: -4.12 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.25 -11.85 -45.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323628854.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.056 kcal (2) G-P(sol) polarization free energy of solvation -33.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds