Wall clock time and date at job start Sat Apr 11 2020 06:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47081 * 2 1 4 4 S 1.81403 * 109.46727 * 179.97438 * 3 2 1 5 5 C 1.81402 * 103.00010 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47316 * 180.02562 * 5 4 3 7 7 O 1.21280 * 119.99682 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99845 * 180.02562 * 6 5 4 9 9 C 1.46921 * 120.63456 * 359.72028 * 8 6 5 10 10 C 1.53623 * 108.54721 * 126.36744 * 9 8 6 11 11 C 1.53048 * 109.23973 * 54.85947 * 10 9 8 12 12 C 1.52992 * 109.46026 * 178.49448 * 11 10 9 13 13 H 1.08996 * 110.89054 * 60.76413 * 12 11 10 14 14 C 1.55162 * 111.00221 * 296.88745 * 12 11 10 15 15 C 1.54373 * 102.92062 * 206.45508 * 14 12 11 16 16 N 1.47021 * 107.28857 * 22.13742 * 15 14 12 17 17 C 1.36938 * 125.65201 * 181.06087 * 16 15 14 18 18 H 1.07999 * 120.00586 * 173.97729 * 17 16 15 19 19 C 1.38816 * 119.99704 * 353.97597 * 17 16 15 20 20 N 1.31622 * 119.99986 * 6.85116 * 19 17 16 21 21 Si 1.86794 * 120.00224 * 186.84817 * 19 17 16 22 22 H 1.48500 * 109.47106 * 94.98407 * 21 19 17 23 23 H 1.48497 * 109.47449 * 214.98448 * 21 19 17 24 24 H 1.48499 * 109.47102 * 334.98694 * 21 19 17 25 25 C 1.47430 * 108.70232 * 1.08946 * 16 15 14 26 26 C 1.53040 * 109.53527 * 298.51249 * 11 10 9 27 27 C 1.46931 * 120.62976 * 179.97438 * 8 6 5 28 28 H 1.09002 * 109.46623 * 300.00093 * 1 2 3 29 29 H 1.09004 * 109.46510 * 59.99510 * 1 2 3 30 30 H 1.09000 * 109.47330 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46623 * 239.99907 * 2 1 3 32 32 H 1.08995 * 109.46657 * 120.00214 * 2 1 3 33 33 H 1.09002 * 109.47469 * 60.00425 * 3 2 1 34 34 H 1.08995 * 109.47551 * 299.99667 * 3 2 1 35 35 H 1.09000 * 109.46808 * 300.00385 * 5 4 3 36 36 H 1.09002 * 109.46905 * 59.99852 * 5 4 3 37 37 H 1.09003 * 109.58620 * 246.20379 * 9 8 6 38 38 H 1.09003 * 109.58459 * 6.62500 * 9 8 6 39 39 H 1.08994 * 109.63283 * 294.87007 * 10 9 8 40 40 H 1.08999 * 109.46216 * 174.73982 * 10 9 8 41 41 H 1.08999 * 109.45682 * 58.52970 * 11 10 9 42 42 H 1.09003 * 110.72058 * 324.78426 * 14 12 11 43 43 H 1.08997 * 110.72256 * 88.06003 * 14 12 11 44 44 H 1.08996 * 109.84566 * 262.73002 * 15 14 12 45 45 H 1.08996 * 110.03304 * 141.64692 * 15 14 12 46 46 H 0.96995 * 120.00095 * 180.02562 * 20 19 17 47 47 H 1.09000 * 110.36439 * 217.02994 * 25 16 15 48 48 H 1.09003 * 110.45699 * 94.76273 * 25 16 15 49 49 H 1.09003 * 109.49565 * 301.41289 * 26 11 10 50 50 H 1.08997 * 109.52647 * 181.33621 * 26 11 10 51 51 H 1.08996 * 109.58635 * 353.37258 * 27 8 6 52 52 H 1.08999 * 109.58606 * 113.79821 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 3.8541 1.4424 0.0008 5 6 4.2623 3.2099 0.0015 6 6 5.7597 3.3797 0.0015 7 8 6.4805 2.4043 0.0016 8 7 6.2977 4.6154 0.0025 9 6 5.4375 5.8064 -0.0026 10 6 5.8464 6.7095 1.1710 11 6 7.3429 7.0151 1.0746 12 6 7.7481 7.9449 2.2201 13 1 7.5587 7.4769 3.1861 14 6 7.0200 9.3107 2.1117 15 6 7.9865 10.2752 2.8319 16 7 9.3194 9.6553 2.8098 17 6 10.4546 10.1834 3.3646 18 1 11.3670 9.6059 3.3804 19 6 10.4325 11.4611 3.9066 20 7 9.2934 12.1125 4.0101 21 14 12.0192 12.2562 4.4892 22 1 12.5725 13.1084 3.4064 23 1 11.7440 13.0921 5.6853 24 1 13.0026 11.2000 4.8392 25 6 9.2317 8.3711 2.0910 26 6 8.1387 5.7114 1.1705 27 6 7.7557 4.7970 0.0031 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6768 1.9564 0.8900 34 1 1.6768 1.9563 -0.8899 35 1 3.8437 3.6797 -0.8885 36 1 3.8429 3.6792 0.8914 37 1 5.5637 6.3442 -0.9423 38 1 4.3961 5.5055 0.1116 39 1 5.6386 6.2023 2.1131 40 1 5.2814 7.6406 1.1267 41 1 7.5538 7.5000 0.1215 42 1 6.8945 9.5991 1.0680 43 1 6.0574 9.2762 2.6218 44 1 7.6630 10.4222 3.8623 45 1 8.0145 11.2329 2.3121 46 1 9.2780 13.0055 4.3885 47 1 9.8813 7.6303 2.5571 48 1 9.4988 8.5025 1.0424 49 1 7.9092 5.2135 2.1127 50 1 9.2053 5.9314 1.1257 51 1 8.2444 3.8299 0.1212 52 1 8.0674 5.2540 -0.9361 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323628854.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:16 Heat of formation + Delta-G solvation = -48.212638 kcal Electronic energy + Delta-G solvation = -27380.369209 eV Core-core repulsion = 23698.069164 eV Total energy + Delta-G solvation = -3682.300044 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.30338 -39.73505 -37.94311 -35.54622 -35.24790 -33.64193 -32.54410 -30.94693 -30.73764 -29.04418 -28.10540 -26.86891 -25.10185 -24.20585 -22.68894 -22.10137 -21.71543 -20.86296 -20.05922 -18.84459 -18.33703 -17.56122 -16.88509 -16.82621 -16.50055 -16.26767 -16.10864 -15.74872 -15.25991 -15.06670 -14.79044 -14.65219 -14.47162 -14.26113 -14.12173 -13.90276 -13.78539 -13.76968 -13.44289 -13.23323 -13.20623 -12.90101 -12.75000 -12.37338 -12.31987 -12.21413 -12.16225 -12.03328 -11.98754 -11.81466 -11.70669 -11.60956 -11.32990 -11.20287 -11.04423 -10.93972 -10.76583 -10.68753 -9.68343 -8.86806 -8.68969 -7.86711 -5.20360 0.46996 1.44009 1.45773 1.50035 1.54671 1.61778 2.00923 2.48839 3.31233 3.39669 3.62694 3.72704 3.84142 3.91746 3.93936 3.98044 4.04619 4.13243 4.19730 4.23849 4.32051 4.41027 4.44040 4.45458 4.49328 4.58206 4.63772 4.70169 4.75129 4.81865 4.85956 4.86229 4.91709 4.99223 5.04526 5.05897 5.13906 5.17299 5.19595 5.21219 5.31281 5.39882 5.43540 5.45744 5.56597 5.61476 5.73947 5.80485 6.21532 6.32285 7.05414 7.11347 7.80021 8.44711 9.24106 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.030277 B = 0.001780 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.582902 B =15725.361427 C =16242.869059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.108 4.108 3 C -0.085 4.085 4 S -0.267 6.267 5 C -0.109 4.109 6 C 0.524 3.476 7 O -0.573 6.573 8 N -0.603 5.603 9 C 0.105 3.895 10 C -0.125 4.125 11 C -0.064 4.064 12 C -0.078 4.078 13 H 0.062 0.938 14 C -0.119 4.119 15 C 0.180 3.820 16 N -0.631 5.631 17 C -0.245 4.245 18 H 0.079 0.921 19 C -0.066 4.066 20 N -0.949 5.949 21 Si 0.976 3.024 22 H -0.286 1.286 23 H -0.294 1.294 24 H -0.269 1.269 25 C 0.136 3.864 26 C -0.123 4.123 27 C 0.117 3.883 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.138 0.862 36 H 0.133 0.867 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.062 0.938 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.000 1.000 45 H 0.006 0.994 46 H 0.246 0.754 47 H 0.032 0.968 48 H 0.024 0.976 49 H 0.054 0.946 50 H 0.073 0.927 51 H 0.073 0.927 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.028 -19.208 -11.947 30.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.147 4.147 3 C -0.233 4.233 4 S -0.041 6.041 5 C -0.259 4.259 6 C 0.312 3.688 7 O -0.452 6.452 8 N -0.336 5.336 9 C -0.016 4.016 10 C -0.163 4.163 11 C -0.083 4.083 12 C -0.098 4.098 13 H 0.081 0.919 14 C -0.157 4.157 15 C 0.055 3.945 16 N -0.357 5.357 17 C -0.374 4.374 18 H 0.097 0.903 19 C -0.259 4.259 20 N -0.598 5.598 21 Si 0.804 3.196 22 H -0.213 1.213 23 H -0.220 1.220 24 H -0.194 1.194 25 C 0.011 3.989 26 C -0.161 4.161 27 C -0.006 4.006 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.156 0.844 36 H 0.151 0.849 37 H 0.109 0.891 38 H 0.129 0.871 39 H 0.081 0.919 40 H 0.113 0.887 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.099 0.901 44 H 0.019 0.981 45 H 0.024 0.976 46 H 0.056 0.944 47 H 0.050 0.950 48 H 0.042 0.958 49 H 0.073 0.927 50 H 0.092 0.908 51 H 0.091 0.909 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -18.869 -20.387 -11.843 30.198 hybrid contribution 0.570 1.976 0.808 2.209 sum -18.299 -18.411 -11.036 28.207 Atomic orbital electron populations 1.21739 0.93180 1.02663 1.02633 1.21244 0.97092 0.93645 1.02736 1.23582 0.91387 1.02175 1.06185 1.87891 1.08956 1.08934 1.98286 1.23486 0.95428 0.97676 1.09320 1.20206 0.90134 0.82789 0.75718 1.90725 1.63359 1.39706 1.51448 1.48167 1.07587 1.05752 1.72127 1.22170 0.94928 0.84810 0.99736 1.22027 0.95110 1.00622 0.98575 1.21010 0.95630 0.93874 0.97776 1.22215 0.94118 0.94790 0.98651 0.91907 1.22756 0.97920 0.94435 1.00617 1.20967 0.83862 0.93552 0.96149 1.44839 1.05800 1.20859 1.64222 1.19470 0.89349 0.97599 1.30995 0.90348 1.25655 1.00214 0.97714 1.02323 1.70206 1.25096 1.13073 1.51454 0.85100 0.79164 0.78335 0.77022 1.21344 1.22043 1.19357 1.21771 0.96055 0.86586 0.94454 1.21889 1.00711 0.95434 0.98063 1.21567 0.79752 1.00173 0.99098 0.91980 0.91810 0.91755 0.91675 0.91881 0.88869 0.88575 0.84384 0.84892 0.89102 0.87062 0.91879 0.88749 0.90178 0.90639 0.90061 0.98123 0.97605 0.94443 0.94997 0.95780 0.92679 0.90798 0.90872 0.89911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.91 71.98 0.71 -0.22 16 2 C -0.11 -1.11 5.94 30.60 0.18 -0.93 16 3 C -0.09 -0.87 5.94 71.98 0.43 -0.44 16 4 S -0.27 -5.05 20.87 -56.49 -1.18 -6.22 16 5 C -0.11 -1.48 4.77 71.24 0.34 -1.14 16 6 C 0.52 11.30 7.72 87.66 0.68 11.97 16 7 O -0.57 -17.99 15.28 -3.03 -0.05 -18.03 16 8 N -0.60 -10.75 2.97 -818.16 -2.43 -13.18 16 9 C 0.11 1.16 6.37 86.51 0.55 1.71 16 10 C -0.13 -1.90 5.21 30.82 0.16 -1.74 16 11 C -0.06 -1.36 1.65 -10.77 -0.02 -1.37 16 12 C -0.08 -2.39 2.56 -9.40 -0.02 -2.42 16 13 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 14 C -0.12 -3.96 5.42 31.80 0.17 -3.79 16 15 C 0.18 8.85 5.38 86.75 0.47 9.31 16 16 N -0.63 -32.81 3.39 -691.90 -2.35 -35.16 16 17 C -0.24 -14.06 10.26 84.03 0.86 -13.20 16 18 H 0.08 4.33 7.84 -2.91 -0.02 4.31 16 19 C -0.07 -3.83 5.48 84.86 0.47 -3.37 16 20 N -0.95 -57.95 10.36 21.65 0.22 -57.73 16 21 Si 0.98 46.48 29.56 68.60 2.03 48.50 16 22 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 23 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 C 0.14 5.42 5.80 86.85 0.50 5.92 16 26 C -0.12 -2.68 5.21 30.66 0.16 -2.52 16 27 C 0.12 2.36 6.43 86.35 0.55 2.92 16 28 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.14 1.07 7.93 -2.39 -0.02 1.05 16 36 H 0.13 1.21 7.70 -2.39 -0.02 1.19 16 37 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.11 0.59 5.93 -2.39 -0.01 0.58 16 39 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.09 1.25 7.32 -2.39 -0.02 1.23 16 41 H 0.08 1.65 8.13 -2.39 -0.02 1.63 16 42 H 0.07 2.24 8.04 -2.39 -0.02 2.22 16 43 H 0.08 2.33 8.09 -2.39 -0.02 2.31 16 44 H 0.00 0.03 7.54 -2.39 -0.02 0.01 16 45 H 0.01 0.32 7.36 -2.39 -0.02 0.30 16 46 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 47 H 0.03 1.27 8.03 -2.39 -0.02 1.25 16 48 H 0.02 0.94 8.02 -2.39 -0.02 0.92 16 49 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 50 H 0.07 1.72 7.32 -2.39 -0.02 1.70 16 51 H 0.07 1.79 7.01 -2.39 -0.02 1.77 16 52 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -77.10 410.10 3.30 -73.80 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 0.86 Total: 7.33 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: 6.19 Total: 0.70 kcal Atomic # 7 Polarization: -101.52 SS G_CDS: -4.55 Total: -106.07 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.05 Total: -18.03 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.50 kcal Atomic # 16 Polarization: -5.05 SS G_CDS: -1.18 Total: -6.22 kcal Total: -77.10 3.30 -73.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323628854.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.584 kcal (2) G-P(sol) polarization free energy of solvation -77.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds