Wall clock time and date at job start Sat Apr 11 2020 06:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46920 * 2 1 4 4 H 1.08997 * 109.47541 * 304.99781 * 3 2 1 5 5 C 1.53003 * 109.47190 * 64.99876 * 3 2 1 6 6 C 1.52999 * 109.46996 * 184.99868 * 3 2 1 7 7 N 1.46901 * 109.47570 * 176.91073 * 6 3 2 8 8 C 1.46813 * 110.99766 * 294.08208 * 7 6 3 9 9 C 1.53266 * 109.44464 * 170.80049 * 8 7 6 10 10 C 1.53216 * 108.62075 * 55.58647 * 9 8 7 11 11 C 1.52762 * 117.79175 * 93.99557 * 10 9 8 12 12 C 1.52733 * 117.84244 * 162.99549 * 10 9 8 13 13 H 1.08997 * 117.50841 * 144.78589 * 12 10 9 14 14 N 1.46510 * 117.50375 * 359.73426 * 12 10 9 15 15 C 1.34774 * 119.99905 * 155.04916 * 14 12 10 16 16 O 1.21283 * 120.00234 * 359.97438 * 15 14 12 17 17 C 1.50702 * 119.99601 * 180.02562 * 15 14 12 18 18 S 1.81003 * 109.46675 * 179.97438 * 17 15 14 19 19 C 1.76207 * 100.00006 * 179.97438 * 18 17 15 20 20 H 1.07998 * 119.99553 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00135 * 180.02562 * 19 18 17 22 22 N 1.31629 * 120.00210 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99830 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47263 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47211 * 119.99976 * 23 21 19 26 26 H 1.48503 * 109.46621 * 239.99694 * 23 21 19 27 27 C 1.53221 * 114.74246 * 308.58252 * 10 9 8 28 28 C 1.46804 * 111.00394 * 169.37974 * 7 6 3 29 29 H 1.08999 * 109.46994 * 299.99902 * 1 2 3 30 30 H 1.08999 * 109.46573 * 59.99819 * 1 2 3 31 31 H 1.08993 * 109.47366 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46994 * 240.00097 * 2 1 3 33 33 H 1.09000 * 109.46461 * 119.99641 * 2 1 3 34 34 H 1.09000 * 109.47087 * 64.48986 * 5 3 2 35 35 H 1.09007 * 109.46933 * 184.47917 * 5 3 2 36 36 H 1.08995 * 109.47475 * 304.48455 * 5 3 2 37 37 H 1.08998 * 109.47097 * 56.90809 * 6 3 2 38 38 H 1.09008 * 109.47251 * 296.91320 * 6 3 2 39 39 H 1.08994 * 109.47685 * 50.80078 * 8 7 6 40 40 H 1.09004 * 109.47170 * 290.78417 * 8 7 6 41 41 H 1.09002 * 109.60521 * 295.84357 * 9 8 7 42 42 H 1.09003 * 109.60741 * 175.33114 * 9 8 7 43 43 H 1.08997 * 117.50419 * 0.35880 * 11 10 9 44 44 H 1.08994 * 117.50979 * 215.28885 * 11 10 9 45 45 H 0.96993 * 119.99729 * 335.04885 * 14 12 10 46 46 H 1.09000 * 109.46752 * 299.99074 * 17 15 14 47 47 H 1.08994 * 109.47562 * 59.99913 * 17 15 14 48 48 H 0.96994 * 120.00335 * 180.02562 * 22 21 19 49 49 H 1.09001 * 109.60601 * 171.15355 * 27 10 9 50 50 H 1.08993 * 109.61363 * 291.67778 * 27 10 9 51 51 H 1.09003 * 109.47461 * 309.19048 * 28 7 6 52 52 H 1.09001 * 109.47686 * 69.20891 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 3.5648 1.4443 -0.1257 7 7 4.0484 2.8295 -0.2001 8 6 3.5928 3.4801 -1.4348 9 6 3.9168 4.9769 -1.3723 10 6 5.4177 5.1421 -1.1126 11 6 6.3346 5.3184 -2.3218 12 6 6.0455 6.5047 -1.3991 13 1 6.8479 6.8377 -0.7409 14 7 5.1671 7.5604 -1.9094 15 6 5.4864 8.8553 -1.7147 16 8 6.5005 9.1465 -1.1166 17 6 4.5825 9.9412 -2.2391 18 16 5.2779 11.5591 -1.8209 19 6 4.0564 12.6105 -2.5331 20 1 3.2027 12.1821 -3.0371 21 6 4.1914 13.9892 -2.4464 22 7 5.2317 14.5113 -1.8316 23 14 2.8960 15.1038 -3.2008 24 1 1.8353 14.2757 -3.8287 25 1 2.2978 15.9552 -2.1414 26 1 3.5256 15.9666 -4.2325 27 6 5.9539 4.3437 0.0802 28 6 5.5095 2.8845 -0.0684 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 2.1337 1.6362 2.1435 35 1 1.9285 3.1759 1.2743 36 1 0.5552 2.0550 1.4356 37 1 3.8555 0.9089 -1.0295 38 1 4.0017 0.9532 0.7439 39 1 2.5164 3.3453 -1.5407 40 1 4.1010 3.0338 -2.2896 41 1 3.3523 5.4398 -0.5628 42 1 3.6553 5.4476 -2.3200 43 1 5.8712 5.3235 -3.3083 44 1 7.3271 4.8710 -2.2705 45 1 4.3559 7.3275 -2.3874 46 1 4.4969 9.8511 -3.3220 47 1 3.5957 9.8424 -1.7871 48 1 5.3258 15.4747 -1.7707 49 1 7.0426 4.3949 0.0949 50 1 5.5531 4.7558 1.0061 51 1 5.8165 2.3198 0.8120 52 1 5.9710 2.4526 -0.9564 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479976430.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:02 Heat of formation + Delta-G solvation = -31.732955 kcal Electronic energy + Delta-G solvation = -27106.322746 eV Core-core repulsion = 23424.737314 eV Total energy + Delta-G solvation = -3681.585432 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.31861 -38.97084 -37.65487 -35.69011 -33.04618 -32.42470 -31.30268 -30.94152 -29.33880 -28.57505 -26.29136 -25.48704 -23.92774 -23.56075 -22.39057 -21.64378 -20.29176 -20.02232 -18.78091 -17.85333 -16.64769 -16.44672 -15.89000 -15.49074 -15.42801 -15.06062 -14.86153 -14.80349 -14.52114 -14.26188 -14.01542 -13.81737 -13.46950 -13.31361 -12.92424 -12.86676 -12.62857 -12.51667 -12.32996 -12.30735 -12.19642 -12.04069 -11.73119 -11.66543 -11.42810 -11.09938 -11.06821 -11.01649 -10.96172 -10.88850 -10.76564 -10.66564 -10.47266 -9.98445 -9.77957 -9.40441 -9.07180 -8.66406 -8.45332 -8.22928 -6.49524 -6.21469 -3.91900 2.97228 2.99699 3.21841 3.27890 3.32391 3.49791 3.66539 3.78357 4.20496 4.31792 4.45266 4.51274 4.53970 4.61548 4.68382 4.76948 4.88196 4.94118 5.05254 5.09721 5.10341 5.13827 5.14785 5.22808 5.26444 5.31540 5.34712 5.40829 5.44986 5.52660 5.53755 5.58637 5.62908 5.63905 5.69431 5.72153 5.77689 5.79269 5.85883 5.88497 5.98257 6.04002 6.05452 6.06767 6.13629 6.17301 6.66717 6.80192 6.82015 7.60250 7.69723 8.35787 8.60468 9.24005 10.86034 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016637 B = 0.001885 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.617908 B =14851.115618 C =16038.088415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.090 4.090 4 H 0.070 0.930 5 C -0.138 4.138 6 C 0.061 3.939 7 N -0.535 5.535 8 C 0.059 3.941 9 C -0.077 4.077 10 C -0.131 4.131 11 C -0.189 4.189 12 C 0.101 3.899 13 H 0.136 0.864 14 N -0.709 5.709 15 C 0.536 3.464 16 O -0.516 6.516 17 C -0.153 4.153 18 S -0.059 6.059 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.076 4.076 28 C 0.062 3.938 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.030 0.970 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.032 0.968 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.398 0.602 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.268 0.732 49 H 0.070 0.930 50 H 0.077 0.923 51 H 0.073 0.927 52 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.612 -31.404 1.996 31.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.109 4.109 4 H 0.088 0.912 5 C -0.195 4.195 6 C -0.067 4.067 7 N -0.260 5.260 8 C -0.069 4.069 9 C -0.115 4.115 10 C -0.133 4.133 11 C -0.228 4.228 12 C -0.006 4.006 13 H 0.154 0.846 14 N -0.361 5.361 15 C 0.323 3.677 16 O -0.389 6.389 17 C -0.304 4.304 18 S 0.168 5.832 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.114 4.114 28 C -0.066 4.066 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.048 0.952 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.050 0.950 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.112 0.888 44 H 0.117 0.883 45 H 0.233 0.767 46 H 0.108 0.892 47 H 0.109 0.891 48 H 0.078 0.922 49 H 0.089 0.911 50 H 0.096 0.904 51 H 0.092 0.908 52 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.015 -30.453 3.441 30.909 hybrid contribution -1.996 -0.244 -2.224 2.998 sum -6.011 -30.697 1.217 31.303 Atomic orbital electron populations 1.21812 0.95724 1.01458 1.02067 1.21547 0.96103 0.96355 1.01763 1.21212 0.94402 0.95843 0.99414 0.91165 1.21745 1.00172 1.01568 0.96053 1.22153 0.95390 0.88753 1.00392 1.61697 1.11071 1.16253 1.36955 1.22102 1.00267 0.94419 0.90065 1.21126 0.93084 0.95552 1.01752 1.21978 0.94697 0.99224 0.97416 1.23615 1.00777 1.03136 0.95230 1.21619 0.96599 0.82186 1.00221 0.84621 1.45437 1.26303 1.04968 1.59378 1.20322 0.86233 0.82475 0.78717 1.90694 1.26126 1.82206 1.39906 1.23531 1.02102 1.00768 1.03988 1.85410 1.32949 0.90246 1.74643 1.22912 1.10142 0.93258 1.42023 0.90864 1.24994 0.96282 0.97198 0.95136 1.70025 1.27743 1.12315 1.40185 0.86114 0.80602 0.79945 0.78816 1.19621 1.20557 1.20575 1.21176 0.99706 0.93490 0.97006 1.22039 0.87122 0.97000 1.00389 0.92293 0.92823 0.92951 0.92339 0.92009 0.93202 0.91526 0.93223 0.95195 0.90891 0.90495 0.94985 0.90306 0.91652 0.88754 0.88329 0.76740 0.89205 0.89138 0.92231 0.91140 0.90412 0.90841 0.94928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.67 37.16 0.36 -0.45 16 2 C -0.12 -0.65 5.40 -26.73 -0.14 -0.79 16 3 C -0.09 -0.56 2.29 -90.62 -0.21 -0.77 16 4 H 0.07 0.48 6.25 -51.93 -0.32 0.15 16 5 C -0.14 -0.95 8.86 37.16 0.33 -0.62 16 6 C 0.06 0.40 4.37 -3.82 -0.02 0.39 16 7 N -0.54 -4.13 4.03 -234.44 -0.95 -5.08 16 8 C 0.06 0.46 5.35 -3.73 -0.02 0.44 16 9 C -0.08 -0.66 5.30 -26.48 -0.14 -0.80 16 10 C -0.13 -1.23 2.02 -154.54 -0.31 -1.54 16 11 C -0.19 -1.81 9.85 -26.83 -0.26 -2.07 16 12 C 0.10 1.23 6.14 -68.04 -0.42 0.81 16 13 H 0.14 1.92 7.40 -51.93 -0.38 1.53 16 14 N -0.71 -9.73 5.35 -53.91 -0.29 -10.01 16 15 C 0.54 10.10 7.85 -10.99 -0.09 10.01 16 16 O -0.52 -11.79 15.43 5.56 0.09 -11.71 16 17 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 18 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 19 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 20 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 23 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 C -0.08 -0.65 5.87 -26.48 -0.16 -0.80 16 28 C 0.06 0.47 5.49 -3.74 -0.02 0.45 16 29 H 0.06 0.32 6.47 -51.93 -0.34 -0.02 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.55 7.83 -51.93 -0.41 0.15 16 36 H 0.05 0.32 6.37 -51.93 -0.33 -0.01 16 37 H 0.03 0.20 8.12 -51.93 -0.42 -0.22 16 38 H 0.07 0.47 7.93 -51.92 -0.41 0.06 16 39 H 0.08 0.56 6.05 -51.93 -0.31 0.24 16 40 H 0.03 0.26 8.12 -51.93 -0.42 -0.16 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.51 6.95 -51.93 -0.36 0.15 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.40 4.38 7.24 -40.82 -0.30 4.09 16 46 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 47 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 48 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 49 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 50 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 51 H 0.07 0.50 7.94 -51.93 -0.41 0.09 16 52 H 0.03 0.25 8.12 -51.93 -0.42 -0.17 16 LS Contribution 417.63 15.07 6.29 6.29 Total: -1.00 -33.09 417.63 -11.49 -44.58 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -9.46 Total: 0.44 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -0.68 Total: -11.63 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: -0.50 Total: -40.58 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -33.09 -11.49 -44.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479976430.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.845 kcal (2) G-P(sol) polarization free energy of solvation -33.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds