Wall clock time and date at job start Sat Apr 11 2020 06:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.47162 * 2 1 4 4 N 1.46494 * 109.47000 * 179.97438 * 3 2 1 5 5 C 1.34776 * 120.00170 * 270.00133 * 4 3 2 6 6 O 1.21289 * 119.99733 * 180.02562 * 5 4 3 7 7 C 1.50699 * 120.00304 * 0.02562 * 5 4 3 8 8 S 1.80994 * 109.47381 * 179.97438 * 7 5 4 9 9 C 1.76198 * 99.99901 * 179.97438 * 8 7 5 10 10 H 1.08002 * 120.00409 * 359.97438 * 9 8 7 11 11 C 1.38804 * 119.99967 * 179.97438 * 9 8 7 12 12 N 1.31632 * 119.99995 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99895 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.46849 * 90.00732 * 13 11 9 15 15 H 1.48498 * 109.47292 * 210.00094 * 13 11 9 16 16 H 1.48496 * 109.47503 * 330.00533 * 13 11 9 17 17 C 1.46506 * 120.00046 * 90.00583 * 4 3 2 18 18 H 1.09000 * 110.89873 * 2.40890 * 17 4 3 19 19 C 1.55135 * 110.98868 * 238.54516 * 17 4 3 20 20 C 1.54316 * 103.01731 * 206.25158 * 19 17 4 21 21 N 1.47438 * 107.23472 * 22.28602 * 20 19 17 22 22 C 1.46901 * 111.00197 * 123.25992 * 21 20 19 23 23 C 1.52990 * 109.47276 * 69.86965 * 22 21 20 24 24 C 1.53786 * 113.61464 * 175.00079 * 23 22 21 25 25 C 1.53781 * 87.17350 * 140.02626 * 24 23 22 26 26 C 1.53781 * 87.08070 * 334.52830 * 25 24 23 27 27 C 1.47845 * 108.56703 * 0.98570 * 21 20 19 28 28 H 1.09002 * 109.47168 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46860 * 299.99952 * 1 2 3 30 30 H 1.09000 * 109.46877 * 59.99377 * 1 2 3 31 31 H 1.09006 * 109.46600 * 240.00271 * 2 1 3 32 32 H 1.09000 * 109.46877 * 120.00623 * 2 1 3 33 33 H 1.09006 * 109.47141 * 60.00603 * 3 2 1 34 34 H 1.09003 * 109.47664 * 300.00622 * 3 2 1 35 35 H 1.09005 * 109.46862 * 299.99971 * 7 5 4 36 36 H 1.08994 * 109.47114 * 59.99071 * 7 5 4 37 37 H 0.96997 * 119.99796 * 179.97438 * 12 11 9 38 38 H 1.09011 * 110.70522 * 87.87095 * 19 17 4 39 39 H 1.08997 * 110.71273 * 324.63593 * 19 17 4 40 40 H 1.09008 * 109.89042 * 262.87684 * 20 19 17 41 41 H 1.09002 * 109.88657 * 141.69326 * 20 19 17 42 42 H 1.09007 * 109.46470 * 309.87376 * 22 21 20 43 43 H 1.08994 * 109.47025 * 189.87750 * 22 21 20 44 44 H 1.09000 * 112.90908 * 43.75450 * 23 22 21 45 45 H 1.09002 * 113.61357 * 25.43543 * 24 23 22 46 46 H 1.09002 * 113.61608 * 254.61705 * 24 23 22 47 47 H 1.08999 * 113.61567 * 89.07405 * 25 24 23 48 48 H 1.08998 * 113.61196 * 219.97759 * 25 24 23 49 49 H 1.09005 * 113.61471 * 139.98321 * 26 25 24 50 50 H 1.08996 * 113.61178 * 270.79663 * 26 25 24 51 51 H 1.09004 * 110.36895 * 94.73358 * 27 21 20 52 52 H 1.08999 * 110.37798 * 217.07405 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1784 1.4425 1.1681 6 8 5.3913 1.4429 1.1685 7 6 3.4245 1.4421 2.4729 8 16 4.6001 1.4416 3.8491 9 6 3.4795 1.4420 5.2088 10 1 2.4143 1.4428 5.0307 11 6 3.9657 1.4413 6.5089 12 7 5.2640 1.4408 6.7260 13 14 2.7777 1.4424 7.9503 14 1 2.4614 0.0425 8.3322 15 1 3.3993 2.1415 9.1036 16 1 1.5279 2.1437 7.5613 17 6 4.2381 1.4423 -1.2678 18 1 3.5518 1.4851 -2.1136 19 6 5.1705 0.2067 -1.3707 20 6 6.2823 0.6888 -2.3261 21 7 6.2919 2.1623 -2.2769 22 6 7.6167 2.6677 -1.8925 23 6 8.6077 2.4184 -3.0311 24 6 10.0001 3.0205 -2.7787 25 6 10.5826 1.7399 -3.3996 26 6 9.2843 1.0358 -2.9715 27 6 5.2566 2.6082 -1.3202 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9563 0.8901 34 1 1.6767 1.9564 -0.8899 35 1 2.7975 2.3319 2.5305 36 1 2.7980 0.5520 2.5303 37 1 5.6038 1.4406 7.6345 38 1 4.6379 -0.6436 -1.7970 39 1 5.5841 -0.0464 -0.3946 40 1 6.0704 0.3530 -3.3412 41 1 7.2467 0.3005 -1.9985 42 1 7.9565 2.1503 -0.9952 43 1 7.5536 3.7374 -1.6932 44 1 8.1978 2.6620 -4.0113 45 1 10.2387 3.1411 -1.7220 46 1 10.1997 3.9189 -3.3628 47 1 10.7117 1.7983 -4.4804 48 1 11.4699 1.3701 -2.8857 49 1 8.9049 0.3315 -3.7119 50 1 9.3278 0.6124 -1.9680 51 1 5.6953 2.7733 -0.3361 52 1 4.7745 3.5175 -1.6792 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481390913.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:29 Heat of formation + Delta-G solvation = -17.307630 kcal Electronic energy + Delta-G solvation = -28306.435308 eV Core-core repulsion = 24625.475406 eV Total energy + Delta-G solvation = -3680.959903 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.41624 -39.18750 -37.40089 -36.02649 -33.05732 -32.44371 -31.40169 -29.51117 -28.35766 -27.01097 -25.89542 -25.59881 -25.33817 -22.99995 -22.11513 -21.52990 -20.47278 -19.51966 -18.81561 -17.63214 -16.76749 -16.62058 -15.88217 -15.26398 -15.11250 -14.94366 -14.82024 -14.77182 -14.50718 -13.87068 -13.71059 -13.46155 -13.31590 -13.20652 -12.83034 -12.57921 -12.55745 -12.49376 -12.27130 -12.08316 -11.99548 -11.81109 -11.48931 -11.45243 -11.23410 -11.08381 -11.07131 -10.98826 -10.89879 -10.77682 -10.66316 -10.62579 -10.24824 -10.15624 -9.82445 -9.18739 -9.08103 -8.48965 -8.24899 -8.23070 -6.51652 -6.23411 -3.93793 2.86559 3.00572 3.20673 3.23604 3.28475 3.55061 4.05604 4.18781 4.48894 4.57841 4.60667 4.65410 4.70927 4.77989 4.82454 4.92796 4.96754 5.11914 5.12056 5.22133 5.29455 5.33639 5.36491 5.47525 5.49615 5.50309 5.59689 5.61249 5.63531 5.67366 5.68240 5.76588 5.77221 5.85067 5.86545 5.88961 5.91346 5.94153 5.99850 6.06488 6.08770 6.10910 6.14528 6.23567 6.28680 6.41552 6.74947 7.02563 7.12616 7.55007 7.58203 8.33496 8.54684 9.22083 10.83981 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010707 B = 0.002978 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.377645 B = 9400.173388 C =11547.619096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 C 0.111 3.889 4 N -0.613 5.613 5 C 0.535 3.465 6 O -0.511 6.511 7 C -0.151 4.151 8 S -0.062 6.062 9 C -0.534 4.534 10 H 0.072 0.928 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.918 3.082 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.272 1.272 17 C 0.145 3.855 18 H 0.096 0.904 19 C -0.157 4.157 20 C 0.047 3.953 21 N -0.524 5.524 22 C 0.060 3.940 23 C -0.101 4.101 24 C -0.137 4.137 25 C -0.143 4.143 26 C -0.139 4.139 27 C 0.022 3.978 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.268 0.732 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.044 0.956 43 H 0.071 0.929 44 H 0.095 0.905 45 H 0.081 0.919 46 H 0.065 0.935 47 H 0.077 0.923 48 H 0.065 0.935 49 H 0.064 0.936 50 H 0.079 0.921 51 H 0.080 0.920 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.405 -0.289 -21.736 21.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.183 4.183 3 C -0.012 4.012 4 N -0.347 5.347 5 C 0.324 3.676 6 O -0.386 6.386 7 C -0.301 4.301 8 S 0.165 5.835 9 C -0.682 4.682 10 H 0.090 0.910 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.744 3.256 14 H -0.203 1.203 15 H -0.207 1.207 16 H -0.197 1.197 17 C 0.041 3.959 18 H 0.114 0.886 19 C -0.196 4.196 20 C -0.081 4.081 21 N -0.248 5.248 22 C -0.068 4.068 23 C -0.120 4.120 24 C -0.175 4.175 25 C -0.181 4.181 26 C -0.176 4.176 27 C -0.106 4.106 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.062 0.938 43 H 0.090 0.910 44 H 0.113 0.887 45 H 0.099 0.901 46 H 0.084 0.916 47 H 0.096 0.904 48 H 0.083 0.917 49 H 0.083 0.917 50 H 0.098 0.902 51 H 0.099 0.901 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.437 -0.067 -22.087 22.091 hybrid contribution -2.117 -0.380 1.746 2.770 sum -1.680 -0.448 -20.341 20.415 Atomic orbital electron populations 1.21700 0.95168 1.01951 1.01914 1.21982 0.96089 0.97307 1.02892 1.21669 0.79287 0.96987 1.03301 1.47917 1.06375 1.75167 1.05229 1.20293 0.87902 0.74992 0.84439 1.90634 1.13684 1.47428 1.86814 1.23599 1.04544 1.04643 0.97363 1.85354 1.08089 1.96695 0.93349 1.22848 0.94276 1.58902 0.92201 0.91000 1.24987 0.95658 0.94550 0.98364 1.70017 1.11743 1.46894 1.21629 0.86182 0.80298 0.78358 0.80757 1.20271 1.20747 1.19692 1.22042 0.93290 0.95110 0.85505 0.88600 1.23185 0.97055 0.97621 1.01730 1.22782 0.98525 0.87925 0.98907 1.63589 1.04770 1.08844 1.47557 1.22256 0.88382 1.00250 0.95937 1.22583 0.93476 0.96328 0.99630 1.22926 0.95993 0.97299 1.01314 1.22797 0.97516 0.97218 1.00519 1.23088 0.96334 0.96607 1.01611 1.23450 0.92847 0.97344 0.96971 0.92520 0.92329 0.92757 0.91808 0.91285 0.89905 0.90568 0.89425 0.89347 0.92203 0.91341 0.89246 0.91117 0.92048 0.93813 0.91049 0.88703 0.90077 0.91638 0.90442 0.91660 0.91687 0.90199 0.90149 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.90 16 2 C -0.14 -1.46 6.26 -26.73 -0.17 -1.63 16 3 C 0.11 1.19 5.21 -4.05 -0.02 1.17 16 4 N -0.61 -8.43 2.56 -163.69 -0.42 -8.85 16 5 C 0.54 9.78 6.97 -10.99 -0.08 9.71 16 6 O -0.51 -10.90 11.90 5.55 0.07 -10.84 16 7 C -0.15 -3.02 4.71 36.01 0.17 -2.85 16 8 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 9 C -0.53 -15.08 9.50 30.94 0.29 -14.78 16 10 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 11 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 12 N -0.87 -26.02 13.22 55.49 0.73 -25.29 16 13 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 17 C 0.15 1.82 3.55 -65.79 -0.23 1.58 16 18 H 0.10 1.00 7.87 -51.93 -0.41 0.59 16 19 C -0.16 -2.02 6.31 -24.91 -0.16 -2.18 16 20 C 0.05 0.55 6.19 -2.84 -0.02 0.54 16 21 N -0.52 -6.55 5.16 -231.26 -1.19 -7.74 16 22 C 0.06 0.74 4.54 -3.83 -0.02 0.72 16 23 C -0.10 -1.02 3.67 -89.67 -0.33 -1.35 16 24 C -0.14 -1.26 7.63 -25.92 -0.20 -1.46 16 25 C -0.14 -1.22 8.08 -25.92 -0.21 -1.43 16 26 C -0.14 -1.33 5.78 -25.78 -0.15 -1.48 16 27 C 0.02 0.30 6.04 -2.30 -0.01 0.29 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.84 7.22 -51.93 -0.37 0.46 16 33 H 0.08 0.93 6.44 -51.93 -0.33 0.59 16 34 H 0.08 0.65 7.94 -51.93 -0.41 0.24 16 35 H 0.09 1.65 7.40 -51.91 -0.38 1.26 16 36 H 0.09 1.67 7.18 -51.92 -0.37 1.29 16 37 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.07 0.77 8.14 -51.92 -0.42 0.34 16 39 H 0.09 1.47 6.12 -51.93 -0.32 1.15 16 40 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 41 H 0.06 0.75 5.42 -51.93 -0.28 0.47 16 42 H 0.04 0.63 7.67 -51.93 -0.40 0.23 16 43 H 0.07 0.88 8.07 -51.93 -0.42 0.46 16 44 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.08 0.85 7.49 -51.93 -0.39 0.46 16 51 H 0.08 1.38 5.33 -51.93 -0.28 1.10 16 52 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 410.21 15.07 6.18 6.18 Total: -1.00 -31.79 410.21 -12.13 -43.92 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -9.41 Total: 2.25 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -0.85 Total: -12.06 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: -0.88 Total: -41.88 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.07 Total: -10.84 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.79 -12.13 -43.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481390913.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.613 kcal (2) G-P(sol) polarization free energy of solvation -31.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds