Wall clock time and date at job start Sat Apr 11 2020 06:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 119.99951 * 2 1 4 4 C 1.53004 * 109.47419 * 124.99834 * 3 2 1 5 5 C 1.52999 * 109.47091 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.46823 * 179.97438 * 5 4 3 7 7 C 1.46902 * 111.00014 * 179.97438 * 6 5 4 8 8 H 1.09006 * 109.44719 * 34.96490 * 7 6 5 9 9 C 1.53039 * 109.45787 * 274.99838 * 7 6 5 10 10 C 1.53196 * 109.33748 * 178.59754 * 9 7 6 11 11 N 1.46992 * 108.73878 * 54.61838 * 10 9 7 12 12 C 1.34784 * 120.60795 * 126.38575 * 11 10 9 13 13 O 1.21283 * 119.99359 * 180.02562 * 12 11 10 14 14 C 1.50691 * 120.00259 * 0.02599 * 12 11 10 15 15 S 1.81005 * 109.47111 * 179.97438 * 14 12 11 16 16 C 1.76196 * 100.00250 * 180.02562 * 15 14 12 17 17 H 1.08003 * 120.00073 * 359.97438 * 16 15 14 18 18 C 1.38794 * 120.00267 * 180.02562 * 16 15 14 19 19 N 1.31629 * 119.99787 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00113 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47359 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47381 * 119.99928 * 20 18 16 23 23 H 1.48503 * 109.47180 * 239.99845 * 20 18 16 24 24 C 1.46922 * 118.75940 * 306.41163 * 11 10 9 25 25 C 1.53042 * 109.46126 * 154.92599 * 7 6 5 26 26 H 1.08992 * 109.50305 * 301.33901 * 25 7 6 27 27 C 1.53002 * 109.49506 * 61.43693 * 25 7 6 28 28 C 1.52995 * 109.47146 * 184.99697 * 27 25 7 29 29 H 1.07999 * 120.00260 * 180.02562 * 1 2 3 30 30 H 1.07999 * 119.99760 * 0.02562 * 1 2 3 31 31 H 1.07999 * 119.99760 * 179.97438 * 2 1 3 32 32 H 1.08993 * 109.47185 * 4.99217 * 3 2 1 33 33 H 1.09012 * 109.46803 * 244.99448 * 3 2 1 34 34 H 1.08997 * 109.46963 * 59.99608 * 4 3 2 35 35 H 1.09005 * 109.46528 * 299.99892 * 4 3 2 36 36 H 1.08993 * 109.47222 * 59.99562 * 5 4 3 37 37 H 1.08997 * 109.47155 * 299.99607 * 5 4 3 38 38 H 1.00908 * 110.99937 * 303.94967 * 6 5 4 39 39 H 1.09002 * 109.49756 * 298.56477 * 9 7 6 40 40 H 1.09000 * 109.49883 * 58.63220 * 9 7 6 41 41 H 1.09001 * 109.58261 * 174.43824 * 10 9 7 42 42 H 1.08996 * 109.58319 * 294.86146 * 10 9 7 43 43 H 1.09001 * 109.47360 * 299.99598 * 14 12 11 44 44 H 1.08998 * 109.47712 * 59.99943 * 14 12 11 45 45 H 0.97005 * 119.99678 * 180.02562 * 19 18 16 46 46 H 1.09004 * 109.58306 * 293.82373 * 24 11 10 47 47 H 1.08994 * 109.70589 * 173.46329 * 24 11 10 48 48 H 1.08997 * 109.46904 * 304.99754 * 27 25 7 49 49 H 1.08999 * 109.47232 * 64.99706 * 27 25 7 50 50 H 1.08998 * 109.47142 * 179.97438 * 28 27 25 51 51 H 1.08997 * 109.47266 * 299.99836 * 28 27 25 52 52 H 1.08999 * 109.47047 * 59.99896 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.8004 2.6579 1.1812 6 7 4.7328 2.6851 2.3161 7 6 5.4873 3.9451 2.3475 8 1 4.8493 4.7589 2.0026 9 6 6.7082 3.8312 1.4318 10 6 7.4737 5.1582 1.4394 11 7 7.7924 5.5115 2.8302 12 6 9.0608 5.7846 3.1954 13 8 9.3113 6.0745 4.3461 14 6 10.1674 5.7300 2.1740 15 16 11.7411 6.1439 2.9668 16 6 12.8252 6.0076 1.5845 17 1 12.4333 5.7354 0.6156 18 6 14.1830 6.2489 1.7410 19 7 14.6608 6.5801 2.9220 20 14 15.3325 6.1036 0.2758 21 1 14.5531 5.7206 -0.9288 22 1 16.0005 7.4086 0.0393 23 1 16.3579 5.0656 0.5520 24 6 6.7028 5.5607 3.8145 25 6 5.9463 4.2291 3.7796 26 1 5.0776 4.2869 4.4354 27 6 6.8698 3.1045 4.2523 28 6 7.2284 3.3234 5.7234 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1316 0.0894 33 1 2.6214 1.4025 -0.9315 34 1 3.7399 0.5066 1.0921 35 1 2.4771 1.2357 2.1130 36 1 3.0958 3.4847 1.2704 37 1 4.3583 2.7549 0.2499 38 1 4.2467 2.5325 3.1871 39 1 7.3590 3.0337 1.7906 40 1 6.3818 3.6053 0.4166 41 1 8.3958 5.0513 0.8681 42 1 6.8554 5.9391 0.9966 43 1 10.2249 4.7258 1.7540 44 1 9.9628 6.4457 1.3778 45 1 15.6097 6.7492 3.0313 46 1 6.0218 6.3745 3.5653 47 1 7.1146 5.7209 4.8109 48 1 6.3622 2.1464 4.1407 49 1 7.7799 3.1055 3.6525 50 1 7.8859 2.5221 6.0602 51 1 7.7360 4.2815 5.8350 52 1 6.3183 3.3225 6.3232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483613613.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:40 Heat of formation + Delta-G solvation = -35.468671 kcal Electronic energy + Delta-G solvation = -27571.390234 eV Core-core repulsion = 23889.642809 eV Total energy + Delta-G solvation = -3681.747425 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.39769 -38.24779 -36.79470 -35.03542 -34.08179 -32.41745 -32.02747 -30.26681 -30.04907 -28.36345 -25.83835 -25.42406 -24.09773 -23.77433 -22.15467 -21.67713 -20.22536 -20.10039 -18.30855 -17.65799 -16.80768 -16.28644 -15.96632 -15.69735 -15.49502 -15.17542 -14.89442 -14.79376 -14.56737 -14.12476 -13.93545 -13.80964 -13.52934 -13.31341 -13.01015 -12.91256 -12.64113 -12.40032 -12.24689 -12.20300 -11.98259 -11.80943 -11.75978 -11.47594 -11.37619 -11.17775 -11.06385 -11.01843 -10.97154 -10.74364 -10.66773 -10.54266 -10.24115 -9.77670 -9.75046 -9.29727 -9.06220 -8.71378 -8.45908 -8.19823 -6.48038 -6.20525 -3.90585 1.85465 2.97182 3.09557 3.22226 3.27410 3.32054 3.62580 3.76337 4.21365 4.37681 4.46534 4.54790 4.57128 4.78031 4.80804 4.94482 4.97000 4.99842 5.02430 5.08938 5.13645 5.14778 5.27982 5.31649 5.37411 5.39957 5.45292 5.50984 5.53042 5.54148 5.62298 5.67810 5.70307 5.75574 5.76605 5.87523 5.90885 5.93205 5.98000 6.12749 6.14591 6.17797 6.20597 6.34400 6.38573 6.48100 6.69953 6.76857 7.08377 7.60199 7.62025 8.36639 8.61213 9.25024 10.86940 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015806 B = 0.002106 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.083578 B =13291.577027 C =14447.640611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C -0.094 4.094 4 C -0.113 4.113 5 C 0.058 3.942 6 N -0.684 5.684 7 C 0.095 3.905 8 H 0.043 0.957 9 C -0.124 4.124 10 C 0.108 3.892 11 N -0.616 5.616 12 C 0.536 3.464 13 O -0.517 6.517 14 C -0.151 4.151 15 S -0.061 6.061 16 C -0.534 4.534 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.918 3.082 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.117 3.883 25 C -0.102 4.102 26 H 0.075 0.925 27 C -0.110 4.110 28 C -0.157 4.157 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.027 0.973 37 H 0.073 0.927 38 H 0.340 0.660 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.064 0.936 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.267 0.733 46 H 0.059 0.941 47 H 0.099 0.901 48 H 0.068 0.932 49 H 0.067 0.933 50 H 0.052 0.948 51 H 0.064 0.936 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.511 -9.771 -4.334 29.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.169 4.169 3 C -0.132 4.132 4 C -0.150 4.150 5 C -0.071 4.071 6 N -0.315 5.315 7 C -0.014 4.014 8 H 0.061 0.939 9 C -0.163 4.163 10 C -0.016 4.016 11 N -0.352 5.352 12 C 0.324 3.676 13 O -0.391 6.391 14 C -0.301 4.301 15 S 0.166 5.834 16 C -0.682 4.682 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.744 3.256 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.007 4.007 25 C -0.122 4.122 26 H 0.094 0.906 27 C -0.147 4.147 28 C -0.215 4.215 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.126 0.874 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.045 0.955 37 H 0.091 0.909 38 H 0.159 0.841 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.110 0.890 42 H 0.082 0.918 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.117 0.883 48 H 0.087 0.913 49 H 0.085 0.915 50 H 0.071 0.929 51 H 0.083 0.917 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -26.479 -9.625 -2.846 28.317 hybrid contribution -0.360 0.124 -2.103 2.138 sum -26.839 -9.500 -4.950 28.898 Atomic orbital electron populations 1.23859 0.96020 1.01794 1.01880 1.22982 0.96008 0.98626 0.99260 1.20739 0.98140 0.95305 0.99033 1.21502 0.97523 0.98056 0.97964 1.22025 0.93561 0.96292 0.95201 1.60474 1.29426 1.35302 1.06263 1.21486 0.94592 0.89903 0.95465 0.93862 1.21962 0.96755 0.97907 0.99639 1.21738 1.00898 0.96053 0.82918 1.48052 1.06954 1.70669 1.09535 1.20290 0.82407 0.75595 0.89294 1.90681 1.82076 1.46418 1.19925 1.23551 1.00384 1.04825 1.01352 1.85392 0.92983 1.90265 1.14787 1.22903 0.94548 1.54532 0.96253 0.90928 1.24984 0.97293 0.94577 0.96722 1.70031 1.14217 1.43897 1.22131 0.86130 0.80085 0.77946 0.81413 1.19619 1.20586 1.20579 1.21565 0.88603 0.95523 0.94965 1.21733 0.98690 0.96336 0.95415 0.90639 1.21460 0.99502 0.97505 0.96234 1.21862 1.00842 1.02696 0.96060 0.88591 0.88702 0.87350 0.91689 0.90817 0.90831 0.92098 0.95497 0.90903 0.84114 0.90143 0.91145 0.89042 0.91812 0.89326 0.89404 0.92267 0.92267 0.88284 0.91341 0.91468 0.92874 0.91744 0.93437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.11 14.32 29.01 0.42 -0.70 16 2 C -0.15 -0.89 9.52 -36.03 -0.34 -1.23 16 3 C -0.09 -0.53 5.66 -27.88 -0.16 -0.68 16 4 C -0.11 -0.67 5.46 -26.73 -0.15 -0.82 16 5 C 0.06 0.38 5.48 -3.83 -0.02 0.36 16 6 N -0.68 -5.20 5.54 -106.68 -0.59 -5.79 16 7 C 0.10 0.81 2.15 -67.67 -0.15 0.67 16 8 H 0.04 0.37 7.80 -51.93 -0.40 -0.04 16 9 C -0.12 -1.18 5.25 -26.61 -0.14 -1.32 16 10 C 0.11 1.18 6.34 -3.67 -0.02 1.16 16 11 N -0.62 -8.59 2.33 -172.72 -0.40 -8.99 16 12 C 0.54 10.11 7.72 -10.99 -0.08 10.03 16 13 O -0.52 -11.63 15.28 5.55 0.08 -11.54 16 14 C -0.15 -3.07 4.50 36.00 0.16 -2.91 16 15 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 16 C -0.53 -15.24 9.50 30.94 0.29 -14.94 16 17 H 0.07 1.96 7.80 -52.48 -0.41 1.56 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.22 13.22 55.49 0.73 -25.48 16 20 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 C 0.12 1.40 5.69 -3.71 -0.02 1.38 16 25 C -0.10 -0.97 2.05 -90.50 -0.19 -1.16 16 26 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 27 C -0.11 -1.21 4.73 -26.73 -0.13 -1.34 16 28 C -0.16 -1.86 9.68 37.15 0.36 -1.50 16 29 H 0.10 0.46 8.06 -52.49 -0.42 0.04 16 30 H 0.09 0.49 7.84 -52.49 -0.41 0.07 16 31 H 0.11 0.60 8.06 -52.49 -0.42 0.17 16 32 H 0.06 0.35 7.79 -51.93 -0.40 -0.05 16 33 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.03 0.18 8.05 -51.93 -0.42 -0.24 16 37 H 0.07 0.51 7.41 -51.93 -0.39 0.13 16 38 H 0.34 2.37 8.26 -39.29 -0.32 2.05 16 39 H 0.08 0.91 6.45 -51.93 -0.33 0.57 16 40 H 0.07 0.60 7.43 -51.93 -0.39 0.21 16 41 H 0.09 1.05 5.94 -51.93 -0.31 0.74 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 1.69 7.69 -51.92 -0.40 1.29 16 44 H 0.09 1.67 7.94 -51.92 -0.41 1.25 16 45 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.10 1.39 5.22 -51.93 -0.27 1.12 16 48 H 0.07 0.71 7.45 -51.93 -0.39 0.32 16 49 H 0.07 0.91 6.13 -51.93 -0.32 0.59 16 50 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 51 H 0.06 0.91 6.46 -51.93 -0.34 0.58 16 52 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 416.55 15.07 6.28 6.28 Total: -1.00 -32.77 416.55 -10.66 -43.43 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -9.27 Total: 0.52 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -0.26 Total: -10.99 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: -0.26 Total: -40.26 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.08 Total: -11.54 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.77 -10.66 -43.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483613613.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.965 kcal (2) G-P(sol) polarization free energy of solvation -32.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds