Wall clock time and date at job start Sat Apr 11 2020 06:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46944 * 109.47469 * 180.02562 * 3 2 1 5 5 C 1.48413 * 111.07511 * 69.87115 * 4 3 2 6 6 C 1.54543 * 105.60261 * 154.58662 * 5 4 3 7 7 C 1.53762 * 105.52585 * 346.64987 * 6 5 4 8 8 C 1.48582 * 111.05025 * 185.51356 * 4 3 2 9 9 C 1.49906 * 113.00689 * 228.64104 * 7 6 5 10 10 C 1.52327 * 112.08972 * 321.31586 * 9 7 6 11 11 C 1.47077 * 114.61624 * 276.30235 * 10 9 7 12 12 C 1.54671 * 110.27147 * 65.10674 * 11 10 9 13 13 N 1.44264 * 109.62373 * 287.59740 * 12 11 10 14 14 C 1.35174 * 117.89941 * 268.10410 * 13 12 11 15 15 O 1.21288 * 119.99457 * 180.21171 * 14 13 12 16 16 C 1.50697 * 120.00382 * 0.21453 * 14 13 12 17 17 S 1.81001 * 109.47255 * 179.97438 * 16 14 13 18 18 C 1.76200 * 99.99849 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99877 * 359.97438 * 18 17 16 20 20 C 1.38803 * 119.99952 * 180.02562 * 18 17 16 21 21 N 1.31631 * 119.99983 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99950 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47009 * 90.00182 * 22 20 18 24 24 H 1.48499 * 109.47241 * 210.00020 * 22 20 18 25 25 H 1.48503 * 109.46987 * 330.00503 * 22 20 18 26 26 C 1.47368 * 124.10677 * 88.33475 * 13 12 11 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 32 32 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 33 33 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 34 34 H 1.08991 * 110.50841 * 273.97673 * 5 4 3 35 35 H 1.09156 * 110.39843 * 35.74094 * 5 4 3 36 36 H 1.08904 * 110.13165 * 106.04282 * 6 5 4 37 37 H 1.09028 * 109.16619 * 227.52578 * 6 5 4 38 38 H 1.08686 * 110.78588 * 315.71871 * 8 4 3 39 39 H 1.08684 * 110.94696 * 79.92887 * 8 4 3 40 40 H 1.09603 * 109.08624 * 82.11802 * 9 7 6 41 41 H 1.09393 * 109.46330 * 199.98457 * 9 7 6 42 42 H 1.09741 * 107.83828 * 156.57614 * 10 9 7 43 43 H 1.08438 * 110.54277 * 39.31119 * 10 9 7 44 44 H 1.09037 * 109.22609 * 304.76391 * 11 10 9 45 45 H 1.08913 * 109.44305 * 185.34602 * 11 10 9 46 46 H 1.09233 * 109.31214 * 167.74276 * 12 11 10 47 47 H 1.08805 * 109.69295 * 48.20626 * 12 11 10 48 48 H 1.09001 * 109.47118 * 300.00374 * 16 14 13 49 49 H 1.09004 * 109.46846 * 59.99573 * 16 14 13 50 50 H 0.96999 * 119.99873 * 180.02562 * 21 20 18 51 51 H 1.09211 * 108.95423 * 196.64696 * 26 13 12 52 52 H 1.09413 * 108.50623 * 79.15343 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5094 1.4426 -0.0006 5 6 4.0426 0.9662 -1.3012 6 6 5.4465 1.5990 -1.4318 7 6 5.5113 2.6847 -0.3448 8 6 4.0431 2.8228 0.1326 9 6 6.0097 4.0010 -0.8605 10 6 7.1330 3.8306 -1.8752 11 6 8.4702 3.6625 -1.2863 12 6 8.5414 2.3402 -0.4870 13 7 7.7814 2.4698 0.7324 14 6 8.4323 2.8838 1.8424 15 8 7.8312 3.0022 2.8892 16 6 9.9048 3.1983 1.7793 17 16 10.4803 3.7229 3.4133 18 6 12.1806 4.0186 3.0583 19 1 12.5590 3.8613 2.0591 20 6 13.0340 4.4528 4.0632 21 7 14.3044 4.6732 3.7982 22 14 12.3797 4.7242 5.7917 23 1 12.5042 3.4664 6.5713 24 1 13.1634 5.7972 6.4548 25 1 10.9514 5.1247 5.7230 26 6 6.3420 2.1744 0.8444 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 4.1139 -0.1213 -1.3094 35 1 3.4042 1.3025 -2.1202 36 1 6.2144 0.8448 -1.2663 37 1 5.5503 2.0382 -2.4243 38 1 3.5024 3.5095 -0.5135 39 1 4.0174 3.1511 1.1684 40 1 5.1797 4.5379 -1.3340 41 1 6.3692 4.6077 -0.0242 42 1 7.1585 4.7305 -2.5028 43 1 6.9340 2.9854 -2.5248 44 1 8.6775 4.5010 -0.6210 45 1 9.2160 3.6435 -2.0798 46 1 9.5833 2.1214 -0.2427 47 1 8.1387 1.5269 -1.0871 48 1 10.4533 2.3091 1.4687 49 1 10.0746 3.9996 1.0601 50 1 14.9009 4.9763 4.5005 51 1 5.9575 2.6257 1.7616 52 1 6.2147 1.0903 0.9193 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484020729.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:50 Heat of formation + Delta-G solvation = -39.535437 kcal Electronic energy + Delta-G solvation = -28597.138150 eV Core-core repulsion = 24915.214377 eV Total energy + Delta-G solvation = -3681.923773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.91046 -39.10724 -37.12373 -34.99955 -33.67465 -32.41458 -32.30793 -30.14911 -29.44865 -27.66522 -26.00109 -25.61969 -25.44795 -23.71199 -22.65403 -21.29692 -20.83193 -19.11044 -18.61069 -17.61134 -16.94662 -16.66693 -16.27759 -15.60455 -15.47287 -15.08719 -14.91168 -14.63338 -14.19097 -14.13466 -13.90125 -13.73931 -13.72290 -13.22029 -13.16963 -12.88334 -12.73698 -12.61909 -12.51047 -12.08296 -12.06841 -11.85772 -11.69189 -11.50601 -11.26763 -11.23884 -11.15462 -10.99577 -10.89566 -10.86353 -10.71961 -10.57950 -10.50475 -10.39853 -9.82808 -9.35708 -8.97969 -8.78730 -8.46678 -8.41915 -6.88691 -6.26789 -3.97926 2.77494 2.99845 3.25895 3.35359 3.52794 3.62263 3.65516 4.14713 4.26221 4.35422 4.50166 4.60043 4.66862 4.68636 4.72867 4.80553 4.86498 4.96913 4.99820 5.10814 5.11169 5.12477 5.14732 5.20172 5.30615 5.35938 5.38919 5.39976 5.44075 5.47310 5.54911 5.61644 5.65971 5.70154 5.72727 5.78846 5.82238 5.88594 5.91956 5.92449 5.98686 6.00280 6.01963 6.07817 6.15373 6.29242 6.53673 6.72516 6.80356 7.53829 7.96301 8.43620 8.52204 9.19683 10.82376 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019994 B = 0.002488 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.093800 B =11250.180282 C =12172.552315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C 0.045 3.955 4 N -0.510 5.510 5 C 0.032 3.968 6 C -0.120 4.120 7 C -0.063 4.063 8 C 0.041 3.959 9 C -0.100 4.100 10 C -0.117 4.117 11 C -0.141 4.141 12 C 0.110 3.890 13 N -0.610 5.610 14 C 0.526 3.474 15 O -0.519 6.519 16 C -0.120 4.120 17 S -0.145 6.145 18 C -0.519 4.519 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.881 5.881 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.235 1.235 26 C 0.134 3.866 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.033 0.967 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.041 0.959 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.048 0.952 39 H 0.087 0.913 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.054 0.946 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.083 0.917 47 H 0.074 0.926 48 H 0.095 0.905 49 H 0.096 0.904 50 H 0.270 0.730 51 H 0.090 0.910 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.036 -6.826 -15.861 29.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.084 4.084 4 N -0.234 5.234 5 C -0.096 4.096 6 C -0.157 4.157 7 C -0.064 4.064 8 C -0.087 4.087 9 C -0.138 4.138 10 C -0.154 4.154 11 C -0.180 4.180 12 C -0.015 4.015 13 N -0.344 5.344 14 C 0.313 3.687 15 O -0.394 6.394 16 C -0.271 4.271 17 S 0.081 5.919 18 C -0.667 4.667 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.518 5.518 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 C 0.012 3.988 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.059 0.941 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.101 0.899 47 H 0.093 0.907 48 H 0.114 0.886 49 H 0.115 0.885 50 H 0.080 0.920 51 H 0.108 0.892 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -24.616 -6.956 -13.821 29.075 hybrid contribution 0.456 0.568 -1.290 1.481 sum -24.159 -6.388 -15.111 29.203 Atomic orbital electron populations 1.21743 0.95699 1.01783 1.01719 1.21479 0.95286 0.96249 1.02718 1.22327 0.87749 0.97431 1.00853 1.65291 1.07739 1.19372 1.30959 1.23164 0.95399 1.00701 0.90290 1.22584 0.96830 0.97535 0.98796 1.21064 0.94605 0.95376 0.95385 1.23431 0.93542 0.89872 1.01841 1.20850 0.97890 0.95635 0.99385 1.20370 0.94703 1.02149 0.98173 1.21292 0.97456 0.98855 1.00391 1.21514 0.96833 0.97251 0.85878 1.47595 1.08853 1.68404 1.09593 1.20513 0.89065 0.75774 0.83308 1.90675 1.68334 1.51021 1.29353 1.23349 0.94176 1.04760 1.04785 1.84792 1.10656 1.87127 1.09318 1.22311 0.91309 1.52293 1.00778 0.89433 1.24714 0.94085 0.93539 0.99005 1.69940 1.03525 1.44186 1.34099 0.86734 0.81687 0.79178 0.84251 1.19230 1.20009 1.15921 1.21812 0.78824 1.00288 0.97908 0.92613 0.92991 0.92527 0.91014 0.92179 0.94845 0.90710 0.90317 0.94114 0.90630 0.90727 0.93381 0.89456 0.92211 0.91277 0.92682 0.91571 0.91305 0.90771 0.89875 0.90729 0.88639 0.88537 0.91992 0.89207 0.91752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.49 16 2 C -0.12 -0.82 5.99 -26.73 -0.16 -0.98 16 3 C 0.04 0.34 4.84 -3.80 -0.02 0.32 16 4 N -0.51 -4.49 5.29 -229.74 -1.22 -5.70 16 5 C 0.03 0.25 5.73 -2.18 -0.01 0.23 16 6 C -0.12 -0.92 4.69 -25.52 -0.12 -1.04 16 7 C -0.06 -0.58 0.54 -154.18 -0.08 -0.66 16 8 C 0.04 0.37 5.28 -1.83 -0.01 0.36 16 9 C -0.10 -0.93 4.52 -28.61 -0.13 -1.05 16 10 C -0.12 -0.99 4.82 -29.92 -0.14 -1.13 16 11 C -0.14 -1.39 5.62 -28.69 -0.16 -1.55 16 12 C 0.11 1.18 5.14 -4.35 -0.02 1.16 16 13 N -0.61 -8.32 2.46 -172.80 -0.43 -8.75 16 14 C 0.53 9.63 7.64 -10.81 -0.08 9.55 16 15 O -0.52 -11.42 15.08 5.55 0.08 -11.34 16 16 C -0.12 -2.37 4.59 36.00 0.17 -2.20 16 17 S -0.15 -3.73 18.55 -107.50 -1.99 -5.72 16 18 C -0.52 -15.01 10.04 30.94 0.31 -14.70 16 19 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 20 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 21 N -0.88 -26.64 13.97 55.49 0.78 -25.86 16 22 Si 0.86 21.97 27.74 -169.99 -4.71 17.25 16 23 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 26 C 0.13 1.65 4.87 -3.17 -0.02 1.64 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.41 7.37 -51.93 -0.38 0.02 16 32 H 0.03 0.24 7.85 -51.93 -0.41 -0.17 16 33 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 34 H 0.08 0.59 7.94 -51.93 -0.41 0.17 16 35 H 0.04 0.29 7.76 -51.84 -0.40 -0.11 16 36 H 0.08 0.61 6.43 -51.98 -0.33 0.27 16 37 H 0.07 0.51 6.11 -51.91 -0.32 0.19 16 38 H 0.05 0.40 7.48 -52.11 -0.39 0.01 16 39 H 0.09 0.87 7.45 -52.11 -0.39 0.48 16 40 H 0.06 0.49 7.56 -51.59 -0.39 0.10 16 41 H 0.07 0.81 7.87 -51.71 -0.41 0.40 16 42 H 0.05 0.44 8.19 -51.51 -0.42 0.02 16 43 H 0.07 0.48 5.48 -52.24 -0.29 0.20 16 44 H 0.07 0.82 7.57 -51.91 -0.39 0.43 16 45 H 0.07 0.63 8.13 -51.98 -0.42 0.21 16 46 H 0.08 0.94 6.06 -51.80 -0.31 0.62 16 47 H 0.07 0.66 6.56 -52.04 -0.34 0.32 16 48 H 0.10 1.76 7.26 -51.92 -0.38 1.39 16 49 H 0.10 1.78 7.38 -51.91 -0.38 1.40 16 50 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 51 H 0.09 1.33 6.20 -51.81 -0.32 1.00 16 52 H 0.06 0.81 7.71 -51.70 -0.40 0.41 16 LS Contribution 395.16 15.07 5.96 5.96 Total: -1.00 -32.75 395.16 -10.93 -43.68 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -9.18 Total: -1.66 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -0.21 Total: -7.86 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: -0.87 Total: -40.31 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.08 Total: -11.34 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.71 Total: 17.25 kcal Atomic # 16 Polarization: -3.73 SS G_CDS: -1.99 Total: -5.72 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.75 -10.93 -43.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484020729.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.141 kcal (2) G-P(sol) polarization free energy of solvation -32.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds