Wall clock time and date at job start Sat Apr 11 2020 06:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47197 * 2 1 4 4 S 1.81396 * 109.47056 * 180.02562 * 3 2 1 5 5 C 1.81402 * 103.00110 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47376 * 179.97438 * 5 4 3 7 7 O 1.21286 * 120.00161 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00357 * 179.97438 * 6 5 4 9 9 C 1.46931 * 120.62714 * 0.02763 * 8 6 5 10 10 C 1.53194 * 108.77629 * 126.36558 * 9 8 6 11 11 C 1.53039 * 109.31026 * 54.63121 * 10 9 8 12 12 C 1.53037 * 109.54101 * 298.63204 * 11 10 9 13 13 H 1.08999 * 109.50017 * 301.41283 * 12 11 10 14 14 C 1.53001 * 109.49926 * 181.31935 * 12 11 10 15 15 H 1.09001 * 110.64179 * 300.86405 * 14 12 11 16 16 C 1.55152 * 110.72029 * 177.72405 * 14 12 11 17 17 C 1.54912 * 101.57984 * 206.13264 * 16 14 12 18 18 N 1.47421 * 104.83366 * 37.01007 * 17 16 14 19 19 C 1.36938 * 125.65294 * 155.90738 * 18 17 16 20 20 H 1.07998 * 119.99955 * 179.97438 * 19 18 17 21 21 C 1.38813 * 119.99582 * 359.97438 * 19 18 17 22 22 N 1.31618 * 120.00286 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99709 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47020 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46798 * 120.00240 * 23 21 19 26 26 H 1.48501 * 109.47230 * 239.99932 * 23 21 19 27 27 C 1.47324 * 108.73582 * 335.71550 * 18 17 16 28 28 C 1.46922 * 120.63238 * 179.97438 * 8 6 5 29 29 H 1.09004 * 109.47164 * 59.99709 * 1 2 3 30 30 H 1.09006 * 109.47351 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47175 * 300.00199 * 1 2 3 32 32 H 1.09008 * 109.46582 * 240.00151 * 2 1 3 33 33 H 1.08995 * 109.46963 * 120.00055 * 2 1 3 34 34 H 1.08997 * 109.47661 * 59.99947 * 3 2 1 35 35 H 1.09008 * 109.46862 * 300.00006 * 3 2 1 36 36 H 1.08999 * 109.47356 * 59.99724 * 5 4 3 37 37 H 1.09004 * 109.46783 * 299.99838 * 5 4 3 38 38 H 1.09000 * 109.57916 * 246.14924 * 9 8 6 39 39 H 1.08997 * 109.58813 * 6.57526 * 9 8 6 40 40 H 1.09000 * 109.49137 * 174.58300 * 10 9 8 41 41 H 1.08993 * 109.49811 * 294.64709 * 10 9 8 42 42 H 1.09000 * 109.46006 * 178.60912 * 11 10 9 43 43 H 1.09006 * 109.46060 * 58.65927 * 11 10 9 44 44 H 1.09001 * 111.00681 * 324.20745 * 16 14 12 45 45 H 1.09001 * 111.00613 * 88.02315 * 16 14 12 46 46 H 1.09003 * 110.36524 * 155.84832 * 17 16 14 47 47 H 1.08998 * 110.36942 * 278.16958 * 17 16 14 48 48 H 0.96995 * 119.99943 * 180.02562 * 22 21 19 49 49 H 1.08999 * 110.06387 * 241.87603 * 27 18 17 50 50 H 1.08994 * 109.85207 * 120.60931 * 27 18 17 51 51 H 1.08999 * 109.58543 * 113.84583 * 28 8 6 52 52 H 1.09003 * 109.70593 * 353.48777 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 16 3.8540 1.4424 -0.0008 5 6 4.2621 3.2099 -0.0015 6 6 5.7595 3.3797 -0.0015 7 8 6.4804 2.4044 -0.0006 8 7 6.2976 4.6154 -0.0025 9 6 5.4373 5.8065 -0.0030 10 6 5.8461 6.7106 1.1642 11 6 7.3426 7.0160 1.0677 12 6 8.1384 5.7124 1.1647 13 1 7.9090 5.2154 2.1073 14 6 9.6354 6.0220 1.1011 15 1 9.8831 6.5324 0.1703 16 6 10.4714 4.7240 1.2546 17 6 11.7971 5.2749 1.8367 18 7 11.3876 6.3607 2.7459 19 6 12.1129 6.8271 3.8097 20 1 11.7240 7.6305 4.4177 21 6 13.3479 6.2671 4.1066 22 7 13.8220 5.2882 3.3653 23 14 14.3376 6.9038 5.5573 24 1 13.5896 7.9997 6.2241 25 1 14.5643 5.7999 6.5245 26 1 15.6456 7.4174 5.0770 27 6 10.0709 6.8646 2.3184 28 6 7.7555 4.7970 -0.0020 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 1.6767 1.9563 0.8899 35 1 1.6766 1.9563 -0.8901 36 1 3.8436 3.6798 0.8885 37 1 3.8428 3.6792 -0.8915 38 1 5.5597 6.3452 -0.9426 39 1 4.3964 5.5055 0.1152 40 1 5.2810 7.6415 1.1185 41 1 5.6377 6.2044 2.1067 42 1 7.6313 7.6792 1.8831 43 1 7.5537 7.5002 0.1141 44 1 9.9961 4.0331 1.9510 45 1 10.6363 4.2488 0.2875 46 1 12.3219 4.4953 2.3889 47 1 12.4282 5.6661 1.0388 48 1 14.6848 4.8967 3.5730 49 1 10.1464 7.9143 2.0347 50 1 9.3496 6.7480 3.1271 51 1 8.0672 5.2532 -0.9416 52 1 8.2462 3.8308 0.1156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485080843.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:12 Heat of formation + Delta-G solvation = -27.634993 kcal Electronic energy + Delta-G solvation = -27648.539088 eV Core-core repulsion = 23967.131357 eV Total energy + Delta-G solvation = -3681.407731 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.40312 -38.31734 -36.68233 -35.09323 -33.76532 -32.35577 -31.43644 -30.18371 -28.86097 -27.72335 -27.04174 -25.45740 -24.32837 -22.84273 -22.15686 -21.09295 -19.94342 -19.40101 -19.09512 -17.47731 -16.80510 -16.77790 -16.12468 -15.74209 -15.64398 -15.10500 -14.57250 -14.48498 -14.21630 -14.02718 -13.92073 -13.85563 -13.64738 -13.44881 -13.15230 -13.04323 -12.57232 -12.41122 -12.19032 -11.92915 -11.80028 -11.56417 -11.53692 -11.32309 -11.27184 -11.07334 -11.03088 -10.89331 -10.82244 -10.57938 -10.18569 -10.09323 -10.04862 -9.94592 -9.78407 -9.66813 -9.37259 -8.75652 -8.59849 -7.92191 -6.76839 -5.59900 -3.01393 1.12721 2.22801 2.40347 2.82502 3.42304 3.47263 3.50142 4.14451 4.37333 4.42415 4.50034 4.53386 4.59490 4.74571 4.78184 4.80691 4.82426 4.95901 4.96106 5.12319 5.14647 5.19363 5.25065 5.41088 5.50085 5.53869 5.55289 5.60733 5.62157 5.62758 5.72597 5.77869 5.80546 5.92463 6.00291 6.02784 6.08433 6.28060 6.30709 6.46226 6.47916 6.66467 6.71557 6.83363 7.03770 7.17703 7.59747 7.68635 7.93022 7.96060 8.43041 9.27761 9.88880 10.54713 11.43856 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019951 B = 0.002011 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.106982 B =13920.638583 C =14496.053576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C -0.107 4.107 4 S -0.185 6.185 5 C -0.126 4.126 6 C 0.529 3.471 7 O -0.516 6.516 8 N -0.607 5.607 9 C 0.106 3.894 10 C -0.135 4.135 11 C -0.117 4.117 12 C -0.087 4.087 13 H 0.075 0.925 14 C -0.092 4.092 15 H 0.070 0.930 16 C -0.140 4.140 17 C 0.152 3.848 18 N -0.606 5.606 19 C -0.221 4.221 20 H 0.077 0.923 21 C -0.013 4.013 22 N -0.921 5.921 23 Si 0.913 3.087 24 H -0.281 1.281 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.145 3.855 28 C 0.119 3.881 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.105 0.895 47 H 0.010 0.990 48 H 0.251 0.749 49 H 0.018 0.982 50 H 0.022 0.978 51 H 0.067 0.933 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.752 -2.480 -10.217 29.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.147 4.147 3 C -0.255 4.255 4 S 0.042 5.958 5 C -0.277 4.277 6 C 0.315 3.685 7 O -0.391 6.391 8 N -0.341 5.341 9 C -0.017 4.017 10 C -0.173 4.173 11 C -0.154 4.154 12 C -0.106 4.106 13 H 0.093 0.907 14 C -0.112 4.112 15 H 0.088 0.912 16 C -0.179 4.179 17 C 0.027 3.973 18 N -0.332 5.332 19 C -0.349 4.349 20 H 0.094 0.906 21 C -0.208 4.208 22 N -0.570 5.570 23 Si 0.744 3.256 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.019 3.981 28 C -0.003 4.003 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.123 0.877 47 H 0.028 0.972 48 H 0.062 0.938 49 H 0.036 0.964 50 H 0.040 0.960 51 H 0.086 0.914 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -26.456 -3.888 -10.110 28.588 hybrid contribution -0.364 1.749 0.707 1.921 sum -26.820 -2.139 -9.403 28.501 Atomic orbital electron populations 1.21765 0.94669 1.02192 1.01988 1.21227 0.95983 0.93864 1.03590 1.23576 0.95383 1.01778 1.04782 1.87651 1.04260 1.05866 1.98023 1.23528 0.98067 0.99370 1.06704 1.19610 0.88746 0.83233 0.76902 1.90773 1.61825 1.37939 1.48580 1.48055 1.07774 1.05018 1.73289 1.21801 0.93935 0.86464 0.99520 1.21934 0.97629 0.99409 0.98374 1.21613 0.93411 0.97708 1.02693 1.21502 0.95288 0.95285 0.98547 0.90687 1.22130 0.92025 0.97999 0.99026 0.91168 1.23068 0.99187 0.95773 0.99875 1.21908 0.90976 0.92404 0.91998 1.44602 1.16950 1.39582 1.32029 1.19123 0.98555 1.14036 1.03215 0.90561 1.24793 0.97671 0.98925 0.99456 1.69825 1.19550 1.27644 1.40010 0.86017 0.79959 0.77839 0.81805 1.20590 1.21777 1.21799 1.21321 0.88677 0.94935 0.93184 1.21753 0.78180 1.01900 0.98471 0.92561 0.92068 0.92525 0.90904 0.90850 0.90153 0.90212 0.87339 0.87432 0.91001 0.90278 0.90688 0.91418 0.90893 0.91786 0.92174 0.92494 0.87744 0.97213 0.93835 0.96416 0.96042 0.91437 0.88453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.91 37.16 0.37 -0.31 16 2 C -0.11 -0.67 5.94 -26.73 -0.16 -0.83 16 3 C -0.11 -0.71 5.94 37.15 0.22 -0.49 16 4 S -0.18 -1.97 20.87 -107.50 -2.24 -4.22 16 5 C -0.13 -1.11 4.77 36.00 0.17 -0.94 16 6 C 0.53 6.75 7.72 -10.99 -0.08 6.66 16 7 O -0.52 -8.91 15.28 5.55 0.08 -8.82 16 8 N -0.61 -6.80 2.97 -172.79 -0.51 -7.31 16 9 C 0.11 0.80 6.34 -3.71 -0.02 0.78 16 10 C -0.14 -1.12 6.08 -26.61 -0.16 -1.28 16 11 C -0.12 -1.28 5.01 -26.69 -0.13 -1.41 16 12 C -0.09 -1.19 1.72 -90.52 -0.16 -1.34 16 13 H 0.07 1.17 8.12 -51.93 -0.42 0.75 16 14 C -0.09 -1.57 2.48 -88.79 -0.22 -1.79 16 15 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 16 C -0.14 -2.75 5.60 -24.58 -0.14 -2.89 16 17 C 0.15 3.81 5.89 -2.53 -0.01 3.80 16 18 N -0.61 -15.90 3.40 -169.83 -0.58 -16.47 16 19 C -0.22 -6.30 10.28 -15.06 -0.15 -6.45 16 20 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 21 C -0.01 -0.38 5.49 -17.43 -0.10 -0.47 16 22 N -0.92 -27.56 10.09 55.49 0.56 -27.00 16 23 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 C 0.14 3.02 5.91 -2.90 -0.02 3.00 16 28 C 0.12 1.55 5.41 -3.73 -0.02 1.53 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 36 H 0.11 0.75 7.69 -51.92 -0.40 0.35 16 37 H 0.11 0.69 7.94 -51.92 -0.41 0.28 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.41 5.93 -51.93 -0.31 0.10 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.87 7.28 -51.93 -0.38 0.49 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 1.22 8.05 -51.93 -0.42 0.80 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.10 2.96 5.88 -51.93 -0.31 2.66 16 47 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 49 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.02 0.45 7.68 -51.93 -0.40 0.05 16 51 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 52 H 0.10 1.51 6.43 -51.93 -0.33 1.18 16 LS Contribution 409.41 15.07 6.17 6.17 Total: -1.00 -33.74 409.41 -11.85 -45.59 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -9.69 Total: -2.97 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -0.62 Total: -2.45 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -0.53 Total: -50.79 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.08 Total: -8.82 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Atomic # 16 Polarization: -1.97 SS G_CDS: -2.24 Total: -4.22 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.74 -11.85 -45.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485080843.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.953 kcal (2) G-P(sol) polarization free energy of solvation -33.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds