Wall clock time and date at job start Sat Apr 11 2020 06:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47236 * 2 1 4 4 N 1.46900 * 109.47305 * 120.00420 * 2 1 3 5 5 C 1.46871 * 110.99854 * 179.97438 * 4 2 1 6 6 C 1.53218 * 109.40540 * 173.40552 * 5 4 2 7 7 C 1.52140 * 109.36036 * 57.73492 * 6 5 4 8 8 C 1.54340 * 110.58998 * 67.79351 * 7 6 5 9 9 C 1.54464 * 102.85967 * 83.55206 * 8 7 6 10 10 H 1.09002 * 110.00608 * 261.97265 * 9 8 7 11 11 C 1.53005 * 109.87808 * 140.89103 * 9 8 7 12 12 N 1.47088 * 107.30154 * 21.46748 * 9 8 7 13 13 C 1.34778 * 125.62809 * 180.94665 * 12 9 8 14 14 O 1.21278 * 119.99748 * 0.02562 * 13 12 9 15 15 C 1.50697 * 120.00209 * 180.02562 * 13 12 9 16 16 S 1.80999 * 109.47181 * 180.02562 * 15 13 12 17 17 C 1.76199 * 99.99825 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00405 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99855 * 179.72221 * 17 16 15 20 20 N 1.31630 * 119.99849 * 180.27695 * 19 17 16 21 21 Si 1.86800 * 120.00065 * 0.28024 * 19 17 16 22 22 H 1.48498 * 109.47118 * 89.99557 * 21 19 17 23 23 H 1.48499 * 109.47134 * 210.00077 * 21 19 17 24 24 H 1.48507 * 109.46904 * 329.99899 * 21 19 17 25 25 C 1.47587 * 108.74659 * 1.21417 * 12 9 8 26 26 C 1.52141 * 111.25255 * 304.48358 * 7 6 5 27 27 C 1.46858 * 110.99757 * 55.58624 * 4 2 1 28 28 H 1.09004 * 109.46596 * 299.99608 * 1 2 3 29 29 H 1.09003 * 109.47213 * 59.99501 * 1 2 3 30 30 H 1.09001 * 109.46935 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46596 * 240.00391 * 2 1 3 32 32 H 1.09004 * 109.47008 * 60.00644 * 3 2 1 33 33 H 1.09006 * 109.47349 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47427 * 300.00368 * 3 2 1 35 35 H 1.09003 * 109.48107 * 53.43091 * 5 4 2 36 36 H 1.08997 * 109.48934 * 293.38849 * 5 4 2 37 37 H 1.08999 * 109.48872 * 297.77096 * 6 5 4 38 38 H 1.08997 * 109.50433 * 177.71165 * 6 5 4 39 39 H 1.09002 * 110.73738 * 325.21508 * 8 7 6 40 40 H 1.08994 * 110.73786 * 201.89495 * 8 7 6 41 41 H 1.08997 * 109.46829 * 300.71050 * 11 9 8 42 42 H 1.09000 * 109.46487 * 60.71260 * 11 9 8 43 43 H 1.08995 * 109.46952 * 180.70710 * 11 9 8 44 44 H 1.08999 * 109.47278 * 59.99800 * 15 13 12 45 45 H 1.09002 * 109.46837 * 300.00183 * 15 13 12 46 46 H 0.97005 * 119.99878 * 180.02562 * 20 19 17 47 47 H 1.09006 * 110.37795 * 95.32315 * 25 12 9 48 48 H 1.08995 * 110.37856 * 217.67409 * 25 12 9 49 49 H 1.09002 * 109.48571 * 175.48322 * 26 7 6 50 50 H 1.08999 * 109.48523 * 295.54685 * 26 7 6 51 51 H 1.08994 * 109.47740 * 306.57562 * 27 4 2 52 52 H 1.09000 * 109.48098 * 66.61410 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 3.4879 -0.7127 1.2329 6 6 3.9587 -1.2933 2.5704 7 6 3.3802 -2.6895 2.7456 8 6 3.9970 -3.6651 1.7209 9 6 5.3187 -4.0867 2.4001 10 1 6.1461 -3.4985 2.0031 11 6 5.5759 -5.5755 2.1584 12 7 5.1706 -3.8323 3.8412 13 6 6.1141 -4.0519 4.7783 14 8 7.1958 -4.4964 4.4571 15 6 5.8249 -3.7451 6.2251 16 16 7.2779 -4.1432 7.2283 17 6 6.6782 -3.7002 8.8247 18 1 5.6757 -3.3144 8.9371 19 6 7.4919 -3.8529 9.9388 20 7 7.0419 -3.5270 11.1321 21 14 9.2256 -4.5207 9.7446 22 1 10.1674 -3.3949 9.5192 23 1 9.6149 -5.2528 10.9765 24 1 9.2726 -5.4454 8.5835 25 6 3.8160 -3.3029 4.0926 26 6 1.8635 -2.6770 2.6266 27 6 1.4646 -2.0494 1.2871 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.6768 1.9562 0.8901 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 3.8680 0.3031 1.1238 36 1 3.8619 -1.3306 0.4166 37 1 3.6179 -0.6537 3.3846 38 1 5.0473 -1.3467 2.5810 39 1 4.1932 -3.1589 0.7758 40 1 3.3481 -4.5278 1.5705 41 1 4.7490 -6.1577 2.5649 42 1 5.6590 -5.7606 1.0875 43 1 6.5032 -5.8685 2.6508 44 1 4.9767 -4.3418 6.5606 45 1 5.5892 -2.6862 6.3318 46 1 7.6108 -3.6333 11.9106 47 1 3.1412 -4.1086 4.3817 48 1 3.8459 -2.5358 4.8664 49 1 1.4865 -3.6985 2.6762 50 1 1.4396 -2.0924 3.4431 51 1 0.3779 -2.0026 1.2171 52 1 1.8560 -2.6558 0.4703 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488973616.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:16 Heat of formation + Delta-G solvation = -39.842091 kcal Electronic energy + Delta-G solvation = -28582.784406 eV Core-core repulsion = 24900.847335 eV Total energy + Delta-G solvation = -3681.937070 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.01975 -39.14947 -37.44220 -34.64108 -32.42379 -32.19314 -31.54166 -31.30409 -28.83666 -27.63115 -27.20127 -26.12250 -25.58937 -23.27753 -22.76860 -21.92334 -20.53422 -19.15859 -18.60867 -17.62800 -17.01622 -16.51584 -16.01504 -15.37137 -15.12729 -15.02875 -14.85080 -14.63905 -14.39402 -14.12283 -13.95939 -13.60730 -13.36516 -13.21703 -13.12212 -12.79679 -12.71722 -12.57546 -12.47263 -12.26603 -12.16608 -11.91333 -11.82746 -11.56338 -11.51160 -11.42923 -11.26422 -11.20152 -11.09199 -10.99204 -10.71161 -10.56117 -10.42768 -10.35403 -9.83829 -9.39348 -8.98779 -8.59399 -8.50686 -8.46980 -6.89793 -6.27262 -3.98643 2.72797 3.00545 3.23087 3.34483 3.49224 3.51942 3.62527 4.14254 4.23267 4.34819 4.37162 4.57042 4.58622 4.68481 4.78044 4.84866 4.94543 4.96133 5.03167 5.09245 5.11778 5.13433 5.22225 5.24628 5.27238 5.36725 5.38381 5.40439 5.42585 5.42842 5.51606 5.55264 5.59814 5.63050 5.64278 5.70357 5.77644 5.81297 5.84405 5.86869 5.95501 6.01046 6.04523 6.05632 6.15111 6.26077 6.52345 6.81194 6.81736 7.66449 7.95894 8.43498 8.50849 9.19013 10.81975 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018838 B = 0.002467 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.999714 B =11349.277206 C =12070.107431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.077 3.923 3 C -0.147 4.147 4 N -0.533 5.533 5 C 0.054 3.946 6 C -0.100 4.100 7 C -0.069 4.069 8 C -0.119 4.119 9 C 0.139 3.861 10 H 0.072 0.928 11 C -0.163 4.163 12 N -0.619 5.619 13 C 0.548 3.452 14 O -0.518 6.518 15 C -0.117 4.117 16 S -0.143 6.143 17 C -0.520 4.520 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.881 5.881 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.110 3.890 26 C -0.100 4.100 27 C 0.054 3.946 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.037 0.963 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.033 0.967 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.270 0.730 47 H 0.069 0.931 48 H 0.080 0.920 49 H 0.070 0.930 50 H 0.076 0.924 51 H 0.080 0.920 52 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.779 5.334 -25.591 30.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 C -0.205 4.205 4 N -0.258 5.258 5 C -0.074 4.074 6 C -0.138 4.138 7 C -0.069 4.069 8 C -0.157 4.157 9 C 0.035 3.965 10 H 0.090 0.910 11 C -0.221 4.221 12 N -0.356 5.356 13 C 0.336 3.664 14 O -0.393 6.393 15 C -0.268 4.268 16 S 0.083 5.917 17 C -0.667 4.667 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 C -0.013 4.013 26 C -0.138 4.138 27 C -0.074 4.074 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.051 0.949 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.099 0.901 49 H 0.089 0.911 50 H 0.095 0.905 51 H 0.098 0.902 52 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -13.226 4.931 -25.394 29.053 hybrid contribution -0.309 -0.155 -0.065 0.351 sum -13.535 4.777 -25.459 29.226 Atomic orbital electron populations 1.21931 0.94364 1.01985 1.02282 1.21578 0.95616 0.95097 0.90858 1.21902 1.01120 0.95241 1.02209 1.61948 1.07960 1.17161 1.38774 1.22204 0.87272 1.00909 0.96974 1.21397 1.00315 0.94443 0.97645 1.21142 0.95673 0.95373 0.94753 1.22798 0.95777 0.98989 0.98145 1.21487 0.97513 0.96535 0.80930 0.91031 1.22143 1.03260 0.95332 1.01352 1.48582 1.14141 1.66018 1.06821 1.19940 0.82969 0.77067 0.86422 1.90684 1.23095 1.43801 1.81678 1.23259 1.04918 1.05108 0.93497 1.84772 1.17910 1.85794 1.03183 1.22311 1.04453 1.49872 0.90089 0.89408 1.24712 0.98589 0.93903 0.94120 1.69941 1.37247 1.46251 0.98294 0.86737 0.84399 0.81013 0.79716 1.19221 1.19967 1.15923 1.22324 0.83638 0.98125 0.97195 1.21408 0.93620 1.00816 0.97938 1.22173 1.00045 0.88331 0.96832 0.91610 0.92347 0.92468 0.94554 0.91616 0.92490 0.92377 0.90266 0.94884 0.90565 0.91066 0.90418 0.90451 0.92633 0.92194 0.90911 0.88694 0.88695 0.91965 0.91240 0.90140 0.91092 0.90498 0.90206 0.94934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 8.83 37.16 0.33 -0.51 16 2 C 0.08 0.50 2.68 -67.72 -0.18 0.32 16 3 C -0.15 -0.91 8.97 37.15 0.33 -0.57 16 4 N -0.53 -4.01 4.51 -226.44 -1.02 -5.03 16 5 C 0.05 0.42 5.08 -3.73 -0.02 0.40 16 6 C -0.10 -0.89 4.87 -27.06 -0.13 -1.02 16 7 C -0.07 -0.58 0.55 -154.00 -0.08 -0.67 16 8 C -0.12 -1.01 4.55 -25.26 -0.11 -1.12 16 9 C 0.14 1.63 3.07 -66.84 -0.21 1.42 16 10 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 11 C -0.16 -1.94 9.10 37.16 0.34 -1.60 16 12 N -0.62 -8.62 3.06 -163.13 -0.50 -9.12 16 13 C 0.55 10.19 7.66 -10.99 -0.08 10.11 16 14 O -0.52 -11.43 14.89 5.56 0.08 -11.35 16 15 C -0.12 -2.35 5.17 36.00 0.19 -2.17 16 16 S -0.14 -3.69 18.54 -107.50 -1.99 -5.68 16 17 C -0.52 -15.11 10.04 30.94 0.31 -14.80 16 18 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 19 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 20 N -0.88 -26.75 13.97 55.49 0.78 -25.98 16 21 Si 0.86 22.00 27.74 -169.99 -4.72 17.29 16 22 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.24 -6.04 6.73 56.52 0.38 -5.66 16 25 C 0.11 1.19 5.61 -2.77 -0.02 1.18 16 26 C -0.10 -0.72 4.85 -27.06 -0.13 -0.85 16 27 C 0.05 0.37 5.00 -3.74 -0.02 0.35 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.31 6.20 -51.93 -0.32 -0.01 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.36 6.27 -51.93 -0.33 0.03 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 0.61 5.98 -51.93 -0.31 0.30 16 36 H 0.03 0.26 6.54 -51.93 -0.34 -0.08 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.73 7.78 -51.93 -0.40 0.32 16 39 H 0.08 0.60 6.32 -51.93 -0.33 0.27 16 40 H 0.08 0.60 7.63 -51.93 -0.40 0.20 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.07 1.10 6.87 -51.93 -0.36 0.74 16 44 H 0.09 1.80 8.14 -51.92 -0.42 1.38 16 45 H 0.09 1.79 7.86 -51.91 -0.41 1.39 16 46 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 47 H 0.07 0.70 8.01 -51.93 -0.42 0.29 16 48 H 0.08 0.89 7.40 -51.93 -0.38 0.51 16 49 H 0.07 0.46 8.04 -51.93 -0.42 0.04 16 50 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 51 H 0.08 0.50 5.86 -51.93 -0.30 0.19 16 52 H 0.03 0.23 7.59 -51.93 -0.39 -0.17 16 LS Contribution 399.44 15.07 6.02 6.02 Total: -1.00 -32.95 399.44 -10.27 -43.22 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -9.34 Total: -2.56 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: 0.41 Total: -6.82 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: -0.74 Total: -40.12 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.08 Total: -11.35 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.72 Total: 17.29 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -1.99 Total: -5.68 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.95 -10.27 -43.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488973616.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.380 kcal (2) G-P(sol) polarization free energy of solvation -32.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds