Wall clock time and date at job start Sat Apr 11 2020 06:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47236 * 2 1 4 4 N 1.46900 * 109.47305 * 120.00420 * 2 1 3 5 5 C 1.46871 * 110.99854 * 179.97438 * 4 2 1 6 6 C 1.53218 * 109.40540 * 173.40552 * 5 4 2 7 7 C 1.52140 * 109.36036 * 57.73492 * 6 5 4 8 8 C 1.54340 * 110.58998 * 67.79351 * 7 6 5 9 9 C 1.54464 * 102.85967 * 83.55206 * 8 7 6 10 10 H 1.09002 * 110.00608 * 261.97265 * 9 8 7 11 11 C 1.53005 * 109.87808 * 140.89103 * 9 8 7 12 12 N 1.47088 * 107.30154 * 21.46748 * 9 8 7 13 13 C 1.34778 * 125.62809 * 180.94665 * 12 9 8 14 14 O 1.21278 * 119.99748 * 0.02562 * 13 12 9 15 15 C 1.50697 * 120.00209 * 180.02562 * 13 12 9 16 16 S 1.80999 * 109.47181 * 180.02562 * 15 13 12 17 17 C 1.76199 * 99.99825 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00405 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99855 * 179.72221 * 17 16 15 20 20 N 1.31630 * 119.99849 * 180.27695 * 19 17 16 21 21 Si 1.86800 * 120.00065 * 0.28024 * 19 17 16 22 22 H 1.48498 * 109.47118 * 89.99557 * 21 19 17 23 23 H 1.48499 * 109.47134 * 210.00077 * 21 19 17 24 24 H 1.48507 * 109.46904 * 329.99899 * 21 19 17 25 25 C 1.47587 * 108.74659 * 1.21417 * 12 9 8 26 26 C 1.52141 * 111.25255 * 304.48358 * 7 6 5 27 27 C 1.46858 * 110.99757 * 55.58624 * 4 2 1 28 28 H 1.09004 * 109.46596 * 299.99608 * 1 2 3 29 29 H 1.09003 * 109.47213 * 59.99501 * 1 2 3 30 30 H 1.09001 * 109.46935 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46596 * 240.00391 * 2 1 3 32 32 H 1.09004 * 109.47008 * 60.00644 * 3 2 1 33 33 H 1.09006 * 109.47349 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47427 * 300.00368 * 3 2 1 35 35 H 1.09003 * 109.48107 * 53.43091 * 5 4 2 36 36 H 1.08997 * 109.48934 * 293.38849 * 5 4 2 37 37 H 1.08999 * 109.48872 * 297.77096 * 6 5 4 38 38 H 1.08997 * 109.50433 * 177.71165 * 6 5 4 39 39 H 1.09002 * 110.73738 * 325.21508 * 8 7 6 40 40 H 1.08994 * 110.73786 * 201.89495 * 8 7 6 41 41 H 1.08997 * 109.46829 * 300.71050 * 11 9 8 42 42 H 1.09000 * 109.46487 * 60.71260 * 11 9 8 43 43 H 1.08995 * 109.46952 * 180.70710 * 11 9 8 44 44 H 1.08999 * 109.47278 * 59.99800 * 15 13 12 45 45 H 1.09002 * 109.46837 * 300.00183 * 15 13 12 46 46 H 0.97005 * 119.99878 * 180.02562 * 20 19 17 47 47 H 1.09006 * 110.37795 * 95.32315 * 25 12 9 48 48 H 1.08995 * 110.37856 * 217.67409 * 25 12 9 49 49 H 1.09002 * 109.48571 * 175.48322 * 26 7 6 50 50 H 1.08999 * 109.48523 * 295.54685 * 26 7 6 51 51 H 1.08994 * 109.47740 * 306.57562 * 27 4 2 52 52 H 1.09000 * 109.48098 * 66.61410 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 3.4879 -0.7127 1.2329 6 6 3.9587 -1.2933 2.5704 7 6 3.3802 -2.6895 2.7456 8 6 3.9970 -3.6651 1.7209 9 6 5.3187 -4.0867 2.4001 10 1 6.1461 -3.4985 2.0031 11 6 5.5759 -5.5755 2.1584 12 7 5.1706 -3.8323 3.8412 13 6 6.1141 -4.0519 4.7783 14 8 7.1958 -4.4964 4.4571 15 6 5.8249 -3.7451 6.2251 16 16 7.2779 -4.1432 7.2283 17 6 6.6782 -3.7002 8.8247 18 1 5.6757 -3.3144 8.9371 19 6 7.4919 -3.8529 9.9388 20 7 7.0419 -3.5270 11.1321 21 14 9.2256 -4.5207 9.7446 22 1 10.1674 -3.3949 9.5192 23 1 9.6149 -5.2528 10.9765 24 1 9.2726 -5.4454 8.5835 25 6 3.8160 -3.3029 4.0926 26 6 1.8635 -2.6770 2.6266 27 6 1.4646 -2.0494 1.2871 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.6768 1.9562 0.8901 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 3.8680 0.3031 1.1238 36 1 3.8619 -1.3306 0.4166 37 1 3.6179 -0.6537 3.3846 38 1 5.0473 -1.3467 2.5810 39 1 4.1932 -3.1589 0.7758 40 1 3.3481 -4.5278 1.5705 41 1 4.7490 -6.1577 2.5649 42 1 5.6590 -5.7606 1.0875 43 1 6.5032 -5.8685 2.6508 44 1 4.9767 -4.3418 6.5606 45 1 5.5892 -2.6862 6.3318 46 1 7.6108 -3.6333 11.9106 47 1 3.1412 -4.1086 4.3817 48 1 3.8459 -2.5358 4.8664 49 1 1.4865 -3.6985 2.6762 50 1 1.4396 -2.0924 3.4431 51 1 0.3779 -2.0026 1.2171 52 1 1.8560 -2.6558 0.4703 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488973616.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:15 Heat of formation + Delta-G solvation = -60.055385 kcal Electronic energy + Delta-G solvation = -28583.660920 eV Core-core repulsion = 24900.847335 eV Total energy + Delta-G solvation = -3682.813585 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.91049 -40.19249 -38.43845 -35.45925 -34.68777 -33.34903 -32.17533 -31.97469 -30.31007 -28.10867 -27.98436 -27.84793 -27.02068 -23.94278 -23.52921 -22.90657 -21.06506 -20.47530 -19.55117 -19.39954 -18.14489 -17.34649 -17.20033 -17.08312 -16.39769 -16.07320 -15.79670 -15.62022 -15.41041 -15.21990 -14.92379 -14.81905 -14.53294 -14.32437 -14.22841 -13.73214 -13.71743 -13.49822 -13.35701 -13.27605 -13.06884 -13.00181 -12.95295 -12.76364 -12.63535 -12.50668 -12.25755 -12.15174 -12.05583 -11.88589 -11.84597 -11.80749 -11.41765 -11.18738 -11.15072 -10.99969 -10.84951 -10.55922 -9.70785 -9.12809 -9.02431 -8.52949 -6.24222 0.94827 1.29887 1.44018 1.52061 1.53050 2.05489 2.23743 2.66571 2.85065 2.94983 3.36606 3.37816 3.69439 3.80185 4.00897 4.04414 4.08931 4.11247 4.15197 4.22262 4.31662 4.35974 4.39709 4.46942 4.49152 4.51388 4.58106 4.68891 4.71703 4.73618 4.77001 4.82765 4.85766 4.91736 4.94122 5.00199 5.05102 5.07645 5.09973 5.16828 5.24797 5.27192 5.37334 5.39680 5.42089 5.46714 5.49261 5.69448 6.09731 6.25573 6.29337 6.38777 6.91966 7.08618 8.59520 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018838 B = 0.002467 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.999714 B =11349.277206 C =12070.107431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.075 3.925 3 C -0.145 4.145 4 N -0.542 5.542 5 C 0.059 3.941 6 C -0.098 4.098 7 C -0.058 4.058 8 C -0.104 4.104 9 C 0.133 3.867 10 H 0.061 0.939 11 C -0.157 4.157 12 N -0.608 5.608 13 C 0.548 3.452 14 O -0.560 6.560 15 C -0.102 4.102 16 S -0.173 6.173 17 C -0.528 4.528 18 H 0.061 0.939 19 C 0.046 3.954 20 N -0.916 5.916 21 Si 0.914 3.086 22 H -0.262 1.262 23 H -0.257 1.257 24 H -0.238 1.238 25 C 0.101 3.899 26 C -0.095 4.095 27 C 0.055 3.945 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.038 0.962 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.037 0.963 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.060 0.940 42 H 0.086 0.914 43 H 0.035 0.965 44 H 0.107 0.893 45 H 0.106 0.894 46 H 0.277 0.723 47 H 0.085 0.915 48 H 0.076 0.924 49 H 0.086 0.914 50 H 0.071 0.929 51 H 0.089 0.911 52 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.168 5.043 -27.955 32.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 C -0.203 4.203 4 N -0.268 5.268 5 C -0.068 4.068 6 C -0.136 4.136 7 C -0.059 4.059 8 C -0.142 4.142 9 C 0.030 3.970 10 H 0.079 0.921 11 C -0.215 4.215 12 N -0.342 5.342 13 C 0.335 3.665 14 O -0.439 6.439 15 C -0.253 4.253 16 S 0.053 5.947 17 C -0.676 4.676 18 H 0.080 0.920 19 C -0.159 4.159 20 N -0.554 5.554 21 Si 0.736 3.264 22 H -0.187 1.187 23 H -0.181 1.181 24 H -0.162 1.162 25 C -0.021 4.021 26 C -0.133 4.133 27 C -0.073 4.073 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.055 0.945 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.079 0.921 42 H 0.105 0.895 43 H 0.054 0.946 44 H 0.125 0.875 45 H 0.124 0.876 46 H 0.087 0.913 47 H 0.103 0.897 48 H 0.094 0.906 49 H 0.104 0.896 50 H 0.090 0.910 51 H 0.107 0.893 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -14.670 4.658 -27.779 31.758 hybrid contribution -0.024 0.015 0.583 0.584 sum -14.693 4.672 -27.196 31.263 Atomic orbital electron populations 1.21901 0.93610 1.02335 1.02347 1.21625 0.96191 0.94994 0.90434 1.21887 1.00897 0.95242 1.02271 1.61949 1.07574 1.17824 1.39491 1.22111 0.87737 1.00839 0.96139 1.21339 0.99281 0.94781 0.98176 1.21080 0.96829 0.94807 0.93210 1.22763 0.93787 0.99563 0.98074 1.21724 0.99291 0.96554 0.79430 0.92127 1.22088 1.01511 0.95190 1.02752 1.48533 1.14321 1.64131 1.07255 1.19585 0.83266 0.77278 0.86338 1.90667 1.24926 1.46151 1.82128 1.23207 1.02253 1.05949 0.93892 1.84681 1.21588 1.86064 1.02332 1.22432 1.03500 1.49567 0.92075 0.92043 1.25557 1.02348 0.94161 0.93868 1.70015 1.38918 1.47304 0.99133 0.85872 0.79820 0.80593 0.80110 1.18666 1.18150 1.16185 1.22632 0.82068 0.98645 0.98757 1.21387 0.91999 1.01742 0.98139 1.22199 1.00606 0.87910 0.96552 0.92414 0.91432 0.91954 0.94425 0.92527 0.92821 0.91339 0.90415 0.94455 0.91549 0.92701 0.88978 0.88628 0.92060 0.89519 0.94583 0.87482 0.87612 0.91314 0.89694 0.90575 0.89584 0.91041 0.89303 0.94341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.83 71.98 0.64 -0.67 16 2 C 0.08 0.83 2.68 44.91 0.12 0.95 16 3 C -0.15 -1.57 8.97 71.98 0.65 -0.93 16 4 N -0.54 -6.95 4.51 -870.31 -3.92 -10.87 16 5 C 0.06 0.82 5.08 86.38 0.44 1.26 16 6 C -0.10 -1.62 4.87 30.38 0.15 -1.47 16 7 C -0.06 -0.85 0.55 -51.86 -0.03 -0.88 16 8 C -0.10 -1.43 4.55 31.55 0.14 -1.29 16 9 C 0.13 2.91 3.07 45.38 0.14 3.05 16 10 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 11 C -0.16 -3.51 9.10 71.98 0.66 -2.86 16 12 N -0.61 -16.37 3.06 -788.42 -2.41 -18.78 16 13 C 0.55 20.38 7.66 87.66 0.67 21.05 16 14 O -0.56 -25.15 14.89 -3.02 -0.05 -25.19 16 15 C -0.10 -4.11 5.17 71.23 0.37 -3.74 16 16 S -0.17 -9.03 18.54 -56.49 -1.05 -10.08 16 17 C -0.53 -31.33 10.04 67.96 0.68 -30.65 16 18 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 19 C 0.05 2.75 5.50 84.86 0.47 3.21 16 20 N -0.92 -56.31 13.97 21.65 0.30 -56.01 16 21 Si 0.91 45.67 27.74 68.60 1.90 47.58 16 22 H -0.26 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 24 H -0.24 -11.91 6.73 99.48 0.67 -11.24 16 25 C 0.10 2.01 5.61 86.61 0.49 2.49 16 26 C -0.09 -1.07 4.85 30.38 0.15 -0.92 16 27 C 0.05 0.57 5.00 86.38 0.43 1.01 16 28 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.50 6.20 -2.39 -0.01 0.48 16 31 H 0.04 0.42 8.14 -2.38 -0.02 0.40 16 32 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.05 0.61 6.27 -2.38 -0.01 0.59 16 34 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.08 1.10 5.98 -2.39 -0.01 1.09 16 36 H 0.04 0.49 6.54 -2.39 -0.02 0.47 16 37 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.05 1.09 7.78 -2.39 -0.02 1.07 16 39 H 0.09 1.09 6.32 -2.39 -0.02 1.07 16 40 H 0.10 1.05 7.63 -2.39 -0.02 1.03 16 41 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.03 1.08 6.87 -2.39 -0.02 1.06 16 44 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 45 H 0.11 4.01 7.86 -2.39 -0.02 3.99 16 46 H 0.28 15.74 8.31 -92.70 -0.77 14.97 16 47 H 0.08 1.49 8.01 -2.38 -0.02 1.47 16 48 H 0.08 1.61 7.40 -2.39 -0.02 1.59 16 49 H 0.09 0.76 8.04 -2.39 -0.02 0.74 16 50 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.09 0.81 5.86 -2.39 -0.01 0.80 16 52 H 0.04 0.38 7.59 -2.39 -0.02 0.36 16 Total: -1.00 -72.48 399.44 1.77 -70.71 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 0.84 Total: 13.04 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: 6.15 Total: -10.39 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -6.03 Total: -85.66 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.05 Total: -25.19 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.90 Total: 47.58 kcal Atomic # 16 Polarization: -9.03 SS G_CDS: -1.05 Total: -10.08 kcal Total: -72.48 1.77 -70.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488973616.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.652 kcal (2) G-P(sol) polarization free energy of solvation -72.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds