Wall clock time and date at job start Sat Apr 11 2020 06:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47556 * 2 1 4 4 N 1.46904 * 109.46804 * 120.00028 * 2 1 3 5 5 C 1.46869 * 111.00010 * 174.99928 * 4 2 1 6 6 C 1.53212 * 109.41129 * 173.40714 * 5 4 2 7 7 C 1.52135 * 109.36271 * 57.72362 * 6 5 4 8 8 C 1.54341 * 110.58311 * 67.80298 * 7 6 5 9 9 C 1.54462 * 102.86546 * 83.55400 * 8 7 6 10 10 H 1.09000 * 109.88064 * 140.89113 * 9 8 7 11 11 C 1.53001 * 109.87580 * 262.03905 * 9 8 7 12 12 N 1.47085 * 107.29800 * 21.46183 * 9 8 7 13 13 C 1.34782 * 125.62338 * 180.95026 * 12 9 8 14 14 O 1.21274 * 120.00113 * 0.02562 * 13 12 9 15 15 C 1.50700 * 119.99685 * 180.02562 * 13 12 9 16 16 S 1.80999 * 109.46793 * 180.02562 * 15 13 12 17 17 C 1.76200 * 100.00069 * 180.02562 * 16 15 13 18 18 H 1.08005 * 120.00255 * 359.97438 * 17 16 15 19 19 C 1.38801 * 120.00191 * 180.02562 * 17 16 15 20 20 N 1.31627 * 120.00147 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99766 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46999 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.47006 * 299.98935 * 21 19 17 24 24 H 1.48499 * 109.47457 * 59.99426 * 21 19 17 25 25 C 1.47588 * 108.75095 * 1.22178 * 12 9 8 26 26 C 1.52135 * 111.25878 * 304.49179 * 7 6 5 27 27 C 1.46846 * 111.00294 * 50.58489 * 4 2 1 28 28 H 1.09002 * 109.46911 * 300.00490 * 1 2 3 29 29 H 1.08998 * 109.46719 * 59.99633 * 1 2 3 30 30 H 1.09000 * 109.47390 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46911 * 239.99510 * 2 1 3 32 32 H 1.09006 * 109.46607 * 299.99927 * 3 2 1 33 33 H 1.09002 * 109.47411 * 59.99816 * 3 2 1 34 34 H 1.08995 * 109.47320 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.48653 * 53.42422 * 5 4 2 36 36 H 1.09000 * 109.49491 * 293.39106 * 5 4 2 37 37 H 1.09010 * 109.48390 * 297.76609 * 6 5 4 38 38 H 1.08996 * 109.51365 * 177.71067 * 6 5 4 39 39 H 1.08998 * 110.73557 * 325.20876 * 8 7 6 40 40 H 1.09000 * 110.88885 * 201.96700 * 8 7 6 41 41 H 1.09000 * 109.47203 * 172.30253 * 11 9 8 42 42 H 1.08998 * 109.47165 * 292.30573 * 11 9 8 43 43 H 1.09006 * 109.47145 * 52.31025 * 11 9 8 44 44 H 1.09001 * 109.47425 * 60.00772 * 15 13 12 45 45 H 1.09004 * 109.47460 * 300.00082 * 15 13 12 46 46 H 0.97002 * 119.99538 * 0.02562 * 20 19 17 47 47 H 1.08997 * 110.37759 * 95.31974 * 25 12 9 48 48 H 1.08994 * 110.37638 * 217.67498 * 25 12 9 49 49 H 1.08996 * 109.49004 * 175.48123 * 26 7 6 50 50 H 1.09008 * 109.48606 * 295.54764 * 26 7 6 51 51 H 1.09006 * 109.48069 * 306.57461 * 27 4 2 52 52 H 1.08997 * 109.48172 * 66.61328 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.4829 -0.8165 1.1752 6 6 3.9673 -1.3923 2.5099 7 6 3.2999 -2.7381 2.7505 8 6 3.8031 -3.7832 1.7323 9 6 5.1192 -4.2794 2.3708 10 1 5.2201 -5.3547 2.2239 11 6 6.3091 -3.5517 1.7420 12 7 5.0498 -3.9753 3.8082 13 6 6.0140 -4.2360 4.7132 14 8 7.0473 -4.7654 4.3629 15 6 5.8080 -3.8694 6.1604 16 16 7.2701 -4.3426 7.1165 17 6 6.7699 -3.8153 8.7216 18 1 5.8027 -3.3557 8.8621 19 6 7.6192 -3.9897 9.8055 20 7 8.7982 -4.5494 9.6344 21 14 7.0885 -3.4313 11.5073 22 1 8.1665 -3.7286 12.4844 23 1 6.8257 -1.9698 11.4891 24 1 5.8513 -4.1519 11.9013 25 6 3.7476 -3.3438 4.0972 26 6 1.7842 -2.6206 2.6917 27 6 1.3744 -2.0029 1.3509 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6767 1.9562 -0.8901 33 1 1.6768 1.9563 0.8900 34 1 3.1300 1.4424 0.0005 35 1 3.9285 0.1660 1.0201 36 1 3.7781 -1.4818 0.3639 37 1 3.7067 -0.7077 3.3172 38 1 5.0489 -1.5231 2.4788 39 1 3.9946 -3.3185 0.7651 40 1 3.0906 -4.6018 1.6313 41 1 7.2186 -3.8036 2.2875 42 1 6.4133 -3.8576 0.7010 43 1 6.1433 -2.4754 1.7897 44 1 4.9348 -4.3946 6.5475 45 1 5.6519 -2.7939 6.2442 46 1 9.0736 -4.8397 8.7508 47 1 3.0305 -4.0909 4.4373 48 1 3.8637 -2.5598 4.8454 49 1 1.3387 -3.6107 2.7875 50 1 1.4369 -1.9848 3.5063 51 1 0.2916 -1.8803 1.3231 52 1 1.6872 -2.6583 0.5381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488973617.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:20 Heat of formation + Delta-G solvation = -41.314378 kcal Electronic energy + Delta-G solvation = -28719.988311 eV Core-core repulsion = 25037.987397 eV Total energy + Delta-G solvation = -3682.000913 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.10721 -39.13639 -37.46136 -34.56249 -32.51280 -32.27795 -31.59697 -31.14462 -28.86479 -27.68313 -27.36231 -26.02537 -24.82286 -23.22612 -22.80278 -21.91737 -20.54755 -19.26270 -18.58256 -18.15753 -17.06368 -16.45340 -15.93378 -15.41688 -15.35914 -15.06121 -14.69752 -14.55473 -14.39767 -13.86421 -13.76375 -13.59333 -13.43747 -13.26170 -13.09972 -12.91250 -12.63828 -12.53585 -12.37377 -12.32169 -12.03902 -11.93359 -11.86948 -11.67751 -11.64023 -11.55461 -11.36812 -11.20362 -11.10710 -10.90783 -10.69604 -10.45761 -10.19405 -10.16387 -9.55512 -9.37281 -8.99985 -8.60007 -8.50032 -8.20294 -6.65436 -6.60728 -3.98265 2.83779 3.01748 3.34384 3.38914 3.47428 3.49909 3.59239 4.13459 4.22262 4.28927 4.35723 4.56923 4.57803 4.67103 4.84873 4.93059 4.94290 4.98667 5.03699 5.08917 5.12480 5.18673 5.23862 5.25620 5.31973 5.36704 5.38458 5.41576 5.42664 5.45262 5.50772 5.56284 5.58123 5.59810 5.67598 5.71585 5.76783 5.78616 5.81821 5.86725 5.95245 5.97634 6.04188 6.04831 6.15881 6.33902 6.55979 6.80222 6.80918 7.66940 7.93381 8.51420 8.52706 9.28691 10.83191 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017267 B = 0.002473 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.157278 B =11317.914879 C =12147.191981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.076 3.924 3 C -0.145 4.145 4 N -0.533 5.533 5 C 0.055 3.945 6 C -0.107 4.107 7 C -0.067 4.067 8 C -0.120 4.120 9 C 0.139 3.861 10 H 0.071 0.929 11 C -0.170 4.170 12 N -0.619 5.619 13 C 0.548 3.452 14 O -0.516 6.516 15 C -0.124 4.124 16 S -0.117 6.117 17 C -0.606 4.606 18 H 0.065 0.935 19 C 0.035 3.965 20 N -0.884 5.884 21 Si 1.084 2.916 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.285 1.285 25 C 0.111 3.889 26 C -0.100 4.100 27 C 0.053 3.947 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.037 0.963 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.077 0.923 36 H 0.034 0.966 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.278 0.722 47 H 0.069 0.931 48 H 0.078 0.922 49 H 0.070 0.930 50 H 0.076 0.924 51 H 0.081 0.919 52 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.926 8.618 -22.183 30.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.032 4.032 3 C -0.203 4.203 4 N -0.259 5.259 5 C -0.072 4.072 6 C -0.145 4.145 7 C -0.068 4.068 8 C -0.158 4.158 9 C 0.035 3.965 10 H 0.089 0.911 11 C -0.227 4.227 12 N -0.356 5.356 13 C 0.336 3.664 14 O -0.390 6.390 15 C -0.275 4.275 16 S 0.110 5.890 17 C -0.754 4.754 18 H 0.083 0.917 19 C -0.175 4.175 20 N -0.518 5.518 21 Si 0.910 3.090 22 H -0.203 1.203 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.013 4.013 26 C -0.138 4.138 27 C -0.075 4.075 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.052 0.948 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.090 0.910 47 H 0.087 0.913 48 H 0.097 0.903 49 H 0.089 0.911 50 H 0.094 0.906 51 H 0.099 0.901 52 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -16.932 8.160 -20.666 27.935 hybrid contribution -1.687 0.098 -1.803 2.471 sum -18.619 8.258 -22.469 30.326 Atomic orbital electron populations 1.21967 0.94430 1.02013 1.02334 1.21583 0.95497 0.95195 0.90890 1.21866 1.01107 0.95190 1.02111 1.61942 1.05651 1.19859 1.38407 1.22175 0.87521 1.00520 0.96988 1.21563 1.00413 0.94918 0.97561 1.21114 0.95684 0.95276 0.94691 1.22774 0.96109 0.98344 0.98594 1.21470 0.95135 0.99338 0.80537 0.91115 1.22313 0.99516 1.00520 1.00379 1.48588 1.17002 1.62433 1.07608 1.19947 0.82114 0.77777 0.86541 1.90684 1.26318 1.41757 1.80288 1.23295 1.05753 1.04535 0.93916 1.84801 1.19212 1.80921 1.04116 1.23692 1.07983 1.50329 0.93419 0.91664 1.26052 0.93321 0.94406 1.03768 1.70798 1.19084 1.35217 1.26733 0.83336 0.75743 0.76167 0.73784 1.20284 1.21126 1.21141 1.22318 0.84985 0.96969 0.97003 1.21414 0.93581 1.00883 0.97942 1.22191 0.99496 0.88997 0.96771 0.91620 0.92297 0.92385 0.94495 0.92411 0.91678 0.92574 0.90430 0.94823 0.90710 0.90314 0.90165 0.90694 0.90634 0.92252 0.92071 0.89195 0.89158 0.90999 0.91271 0.90315 0.91105 0.90567 0.90094 0.94932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 8.65 37.16 0.32 -0.52 16 2 C 0.08 0.51 2.69 -67.71 -0.18 0.32 16 3 C -0.15 -0.91 9.11 37.16 0.34 -0.57 16 4 N -0.53 -4.05 4.50 -226.44 -1.02 -5.06 16 5 C 0.06 0.44 5.14 -3.73 -0.02 0.42 16 6 C -0.11 -0.98 4.82 -27.06 -0.13 -1.11 16 7 C -0.07 -0.58 0.55 -154.01 -0.08 -0.67 16 8 C -0.12 -1.06 4.59 -25.26 -0.12 -1.17 16 9 C 0.14 1.70 3.37 -66.84 -0.23 1.47 16 10 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 11 C -0.17 -2.09 9.06 37.16 0.34 -1.75 16 12 N -0.62 -8.99 3.07 -163.14 -0.50 -9.49 16 13 C 0.55 10.66 7.64 -10.98 -0.08 10.58 16 14 O -0.52 -11.90 14.68 5.56 0.08 -11.82 16 15 C -0.12 -2.60 5.17 36.01 0.19 -2.42 16 16 S -0.12 -3.20 19.60 -107.50 -2.11 -5.31 16 17 C -0.61 -17.67 9.50 30.94 0.29 -17.38 16 18 H 0.07 1.82 7.80 -52.48 -0.41 1.41 16 19 C 0.03 1.03 5.49 -17.43 -0.10 0.93 16 20 N -0.88 -27.77 13.67 55.49 0.76 -27.02 16 21 Si 1.08 25.15 29.92 -169.99 -5.09 20.07 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 25 C 0.11 1.24 5.61 -2.77 -0.02 1.22 16 26 C -0.10 -0.73 4.85 -27.06 -0.13 -0.86 16 27 C 0.05 0.37 4.87 -3.74 -0.02 0.35 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.31 6.17 -51.93 -0.32 -0.01 16 31 H 0.04 0.26 8.13 -51.93 -0.42 -0.16 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.36 6.39 -51.93 -0.33 0.03 16 35 H 0.08 0.61 6.15 -51.93 -0.32 0.29 16 36 H 0.03 0.27 6.54 -51.93 -0.34 -0.07 16 37 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 38 H 0.08 0.82 5.06 -51.93 -0.26 0.56 16 39 H 0.08 0.65 6.00 -51.93 -0.31 0.33 16 40 H 0.07 0.60 7.94 -51.93 -0.41 0.18 16 41 H 0.07 1.20 6.55 -51.93 -0.34 0.86 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.70 5.28 -51.93 -0.27 0.43 16 44 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 45 H 0.09 1.78 7.86 -51.91 -0.41 1.37 16 46 H 0.28 8.92 7.12 -40.82 -0.29 8.62 16 47 H 0.07 0.72 8.01 -51.93 -0.42 0.30 16 48 H 0.08 0.90 7.40 -51.93 -0.38 0.52 16 49 H 0.07 0.46 8.04 -51.93 -0.42 0.05 16 50 H 0.08 0.60 8.14 -51.92 -0.42 0.17 16 51 H 0.08 0.51 5.79 -51.93 -0.30 0.21 16 52 H 0.03 0.23 7.59 -51.93 -0.39 -0.16 16 LS Contribution 394.97 15.07 5.95 5.95 Total: -1.00 -34.01 394.97 -10.50 -44.51 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -8.96 Total: -0.68 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: 0.37 Total: -11.15 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: -0.76 Total: -41.57 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.08 Total: -11.82 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.09 Total: 20.07 kcal Atomic # 16 Polarization: -3.20 SS G_CDS: -2.11 Total: -5.31 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.01 -10.50 -44.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488973617.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.200 kcal (2) G-P(sol) polarization free energy of solvation -34.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds