Wall clock time and date at job start Sat Apr 11 2020 06:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47556 * 2 1 4 4 N 1.46904 * 109.46804 * 120.00028 * 2 1 3 5 5 C 1.46869 * 111.00010 * 174.99928 * 4 2 1 6 6 C 1.53212 * 109.41129 * 173.40714 * 5 4 2 7 7 C 1.52135 * 109.36271 * 57.72362 * 6 5 4 8 8 C 1.54341 * 110.58311 * 67.80298 * 7 6 5 9 9 C 1.54462 * 102.86546 * 83.55400 * 8 7 6 10 10 H 1.09000 * 109.88064 * 140.89113 * 9 8 7 11 11 C 1.53001 * 109.87580 * 262.03905 * 9 8 7 12 12 N 1.47085 * 107.29800 * 21.46183 * 9 8 7 13 13 C 1.34782 * 125.62338 * 180.95026 * 12 9 8 14 14 O 1.21274 * 120.00113 * 0.02562 * 13 12 9 15 15 C 1.50700 * 119.99685 * 180.02562 * 13 12 9 16 16 S 1.80999 * 109.46793 * 180.02562 * 15 13 12 17 17 C 1.76200 * 100.00069 * 180.02562 * 16 15 13 18 18 H 1.08005 * 120.00255 * 359.97438 * 17 16 15 19 19 C 1.38801 * 120.00191 * 180.02562 * 17 16 15 20 20 N 1.31627 * 120.00147 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99766 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46999 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.47006 * 299.98935 * 21 19 17 24 24 H 1.48499 * 109.47457 * 59.99426 * 21 19 17 25 25 C 1.47588 * 108.75095 * 1.22178 * 12 9 8 26 26 C 1.52135 * 111.25878 * 304.49179 * 7 6 5 27 27 C 1.46846 * 111.00294 * 50.58489 * 4 2 1 28 28 H 1.09002 * 109.46911 * 300.00490 * 1 2 3 29 29 H 1.08998 * 109.46719 * 59.99633 * 1 2 3 30 30 H 1.09000 * 109.47390 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46911 * 239.99510 * 2 1 3 32 32 H 1.09006 * 109.46607 * 299.99927 * 3 2 1 33 33 H 1.09002 * 109.47411 * 59.99816 * 3 2 1 34 34 H 1.08995 * 109.47320 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.48653 * 53.42422 * 5 4 2 36 36 H 1.09000 * 109.49491 * 293.39106 * 5 4 2 37 37 H 1.09010 * 109.48390 * 297.76609 * 6 5 4 38 38 H 1.08996 * 109.51365 * 177.71067 * 6 5 4 39 39 H 1.08998 * 110.73557 * 325.20876 * 8 7 6 40 40 H 1.09000 * 110.88885 * 201.96700 * 8 7 6 41 41 H 1.09000 * 109.47203 * 172.30253 * 11 9 8 42 42 H 1.08998 * 109.47165 * 292.30573 * 11 9 8 43 43 H 1.09006 * 109.47145 * 52.31025 * 11 9 8 44 44 H 1.09001 * 109.47425 * 60.00772 * 15 13 12 45 45 H 1.09004 * 109.47460 * 300.00082 * 15 13 12 46 46 H 0.97002 * 119.99538 * 0.02562 * 20 19 17 47 47 H 1.08997 * 110.37759 * 95.31974 * 25 12 9 48 48 H 1.08994 * 110.37638 * 217.67498 * 25 12 9 49 49 H 1.08996 * 109.49004 * 175.48123 * 26 7 6 50 50 H 1.09008 * 109.48606 * 295.54764 * 26 7 6 51 51 H 1.09006 * 109.48069 * 306.57461 * 27 4 2 52 52 H 1.08997 * 109.48172 * 66.61328 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.4829 -0.8165 1.1752 6 6 3.9673 -1.3923 2.5099 7 6 3.2999 -2.7381 2.7505 8 6 3.8031 -3.7832 1.7323 9 6 5.1192 -4.2794 2.3708 10 1 5.2201 -5.3547 2.2239 11 6 6.3091 -3.5517 1.7420 12 7 5.0498 -3.9753 3.8082 13 6 6.0140 -4.2360 4.7132 14 8 7.0473 -4.7654 4.3629 15 6 5.8080 -3.8694 6.1604 16 16 7.2701 -4.3426 7.1165 17 6 6.7699 -3.8153 8.7216 18 1 5.8027 -3.3557 8.8621 19 6 7.6192 -3.9897 9.8055 20 7 8.7982 -4.5494 9.6344 21 14 7.0885 -3.4313 11.5073 22 1 8.1665 -3.7286 12.4844 23 1 6.8257 -1.9698 11.4891 24 1 5.8513 -4.1519 11.9013 25 6 3.7476 -3.3438 4.0972 26 6 1.7842 -2.6206 2.6917 27 6 1.3744 -2.0029 1.3509 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6767 1.9562 -0.8901 33 1 1.6768 1.9563 0.8900 34 1 3.1300 1.4424 0.0005 35 1 3.9285 0.1660 1.0201 36 1 3.7781 -1.4818 0.3639 37 1 3.7067 -0.7077 3.3172 38 1 5.0489 -1.5231 2.4788 39 1 3.9946 -3.3185 0.7651 40 1 3.0906 -4.6018 1.6313 41 1 7.2186 -3.8036 2.2875 42 1 6.4133 -3.8576 0.7010 43 1 6.1433 -2.4754 1.7897 44 1 4.9348 -4.3946 6.5475 45 1 5.6519 -2.7939 6.2442 46 1 9.0736 -4.8397 8.7508 47 1 3.0305 -4.0909 4.4373 48 1 3.8637 -2.5598 4.8454 49 1 1.3387 -3.6107 2.7875 50 1 1.4369 -1.9848 3.5063 51 1 0.2916 -1.8803 1.3231 52 1 1.6872 -2.6583 0.5381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488973617.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:19 Heat of formation + Delta-G solvation = -62.585290 kcal Electronic energy + Delta-G solvation = -28720.910687 eV Core-core repulsion = 25037.987397 eV Total energy + Delta-G solvation = -3682.923289 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.02582 -40.21957 -38.48541 -35.40657 -34.76174 -33.43932 -32.29750 -31.81329 -30.39720 -28.28951 -28.03454 -27.12521 -26.91660 -23.83935 -23.63982 -22.93523 -21.08578 -20.72280 -20.02555 -19.40410 -18.15644 -17.44234 -17.10708 -16.88013 -16.17736 -16.03903 -15.75436 -15.70201 -15.54734 -15.17001 -14.87979 -14.70895 -14.49004 -14.32609 -14.11177 -14.01371 -13.87201 -13.72877 -13.52921 -13.28814 -13.03215 -12.96661 -12.74282 -12.69640 -12.52286 -12.38850 -12.19642 -11.99068 -11.95954 -11.83477 -11.80183 -11.59071 -11.43036 -11.15034 -11.10709 -10.95564 -10.85954 -10.34911 -9.74978 -9.13901 -8.94156 -8.89828 -6.29586 1.13458 1.47751 1.50681 1.59990 1.80229 1.99501 2.32889 2.93668 3.00922 3.06733 3.34407 3.38012 3.66590 3.79483 3.94603 4.01985 4.07780 4.09062 4.09870 4.18671 4.27197 4.29511 4.32644 4.44761 4.47644 4.49217 4.55015 4.63516 4.69013 4.70178 4.75704 4.81545 4.84267 4.89526 4.93153 4.98546 5.01226 5.06056 5.07070 5.10341 5.21662 5.29710 5.36485 5.39846 5.41876 5.45921 5.49507 5.62180 6.12997 6.24459 6.28180 6.34214 7.03928 7.05552 8.49189 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017267 B = 0.002473 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.157278 B =11317.914879 C =12147.191981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.075 3.925 3 C -0.143 4.143 4 N -0.542 5.542 5 C 0.061 3.939 6 C -0.105 4.105 7 C -0.056 4.056 8 C -0.106 4.106 9 C 0.131 3.869 10 H 0.062 0.938 11 C -0.165 4.165 12 N -0.608 5.608 13 C 0.546 3.454 14 O -0.563 6.563 15 C -0.100 4.100 16 S -0.193 6.193 17 C -0.613 4.613 18 H 0.074 0.926 19 C -0.019 4.019 20 N -0.912 5.912 21 Si 1.137 2.863 22 H -0.279 1.279 23 H -0.263 1.263 24 H -0.262 1.262 25 C 0.101 3.899 26 C -0.095 4.095 27 C 0.054 3.946 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.037 0.963 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.038 0.962 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.033 0.967 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.260 0.740 47 H 0.086 0.914 48 H 0.076 0.924 49 H 0.085 0.915 50 H 0.072 0.928 51 H 0.091 0.909 52 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.362 9.628 -23.207 33.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.033 4.033 3 C -0.201 4.201 4 N -0.268 5.268 5 C -0.067 4.067 6 C -0.142 4.142 7 C -0.057 4.057 8 C -0.143 4.143 9 C 0.029 3.971 10 H 0.080 0.920 11 C -0.222 4.222 12 N -0.342 5.342 13 C 0.333 3.667 14 O -0.441 6.441 15 C -0.251 4.251 16 S 0.034 5.966 17 C -0.760 4.760 18 H 0.092 0.908 19 C -0.222 4.222 20 N -0.547 5.547 21 Si 0.954 3.046 22 H -0.204 1.204 23 H -0.187 1.187 24 H -0.187 1.187 25 C -0.021 4.021 26 C -0.133 4.133 27 C -0.074 4.074 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.056 0.944 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.052 0.948 42 H 0.102 0.898 43 H 0.088 0.912 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.071 0.929 47 H 0.104 0.896 48 H 0.094 0.906 49 H 0.104 0.896 50 H 0.091 0.909 51 H 0.109 0.891 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -20.431 9.188 -21.746 31.221 hybrid contribution -0.693 -0.178 -1.625 1.776 sum -21.124 9.010 -23.371 32.766 Atomic orbital electron populations 1.21937 0.93575 1.02397 1.02457 1.21630 0.96156 0.95055 0.90431 1.21851 1.00815 0.95219 1.02210 1.61944 1.05266 1.20460 1.39098 1.22082 0.88021 1.00461 0.96106 1.21502 0.99437 0.95125 0.98157 1.21058 0.96918 0.94735 0.92991 1.22747 0.94102 0.98785 0.98678 1.21726 0.97233 0.99064 0.79117 0.91998 1.22264 0.97670 1.01127 1.01175 1.48534 1.16922 1.60699 1.08065 1.19645 0.82549 0.77944 0.86531 1.90669 1.28418 1.44233 1.80804 1.23155 1.02433 1.05306 0.94201 1.85033 1.24260 1.81726 1.05626 1.24013 1.08282 1.49853 0.93889 0.90782 1.27868 0.92606 0.93469 1.08275 1.70919 1.20696 1.37406 1.25716 0.82725 0.76095 0.77186 0.68603 1.20447 1.18750 1.18715 1.22658 0.83439 0.97335 0.98701 1.21394 0.91877 1.01771 0.98234 1.22222 1.00052 0.88635 0.96454 0.92275 0.91424 0.91845 0.94464 0.91378 0.92513 0.93010 0.90567 0.94425 0.91576 0.91935 0.88678 0.88823 0.94757 0.89843 0.91236 0.87689 0.87805 0.92921 0.89619 0.90563 0.89617 0.90916 0.89092 0.94429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.65 71.98 0.62 -0.64 16 2 C 0.08 0.81 2.69 44.91 0.12 0.93 16 3 C -0.14 -1.54 9.11 71.98 0.66 -0.88 16 4 N -0.54 -6.83 4.50 -870.34 -3.92 -10.75 16 5 C 0.06 0.84 5.14 86.38 0.44 1.28 16 6 C -0.10 -1.73 4.82 30.38 0.15 -1.58 16 7 C -0.06 -0.83 0.55 -51.86 -0.03 -0.86 16 8 C -0.11 -1.52 4.59 31.55 0.14 -1.38 16 9 C 0.13 3.05 3.37 45.38 0.15 3.21 16 10 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 11 C -0.16 -4.00 9.06 71.98 0.65 -3.35 16 12 N -0.61 -17.20 3.07 -788.44 -2.42 -19.63 16 13 C 0.55 21.58 7.64 87.66 0.67 22.25 16 14 O -0.56 -27.12 14.68 -3.01 -0.04 -27.17 16 15 C -0.10 -4.20 5.17 71.24 0.37 -3.83 16 16 S -0.19 -10.96 19.60 -56.49 -1.11 -12.07 16 17 C -0.61 -36.03 9.50 67.95 0.65 -35.39 16 18 H 0.07 4.09 7.80 -2.91 -0.02 4.06 16 19 C -0.02 -1.13 5.49 84.86 0.47 -0.66 16 20 N -0.91 -58.79 13.67 21.65 0.30 -58.50 16 21 Si 1.14 49.84 29.92 68.60 2.05 51.90 16 22 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 24 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 25 C 0.10 2.04 5.61 86.61 0.49 2.53 16 26 C -0.09 -1.06 4.85 30.38 0.15 -0.91 16 27 C 0.05 0.56 4.87 86.38 0.42 0.98 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.48 6.17 -2.39 -0.01 0.46 16 31 H 0.04 0.41 8.13 -2.39 -0.02 0.39 16 32 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.05 0.59 6.39 -2.39 -0.02 0.58 16 35 H 0.08 1.08 6.15 -2.39 -0.01 1.06 16 36 H 0.04 0.49 6.54 -2.39 -0.02 0.48 16 37 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.06 1.25 5.06 -2.39 -0.01 1.23 16 39 H 0.09 1.17 6.00 -2.39 -0.01 1.16 16 40 H 0.09 1.09 7.94 -2.39 -0.02 1.07 16 41 H 0.03 1.13 6.55 -2.39 -0.02 1.11 16 42 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.07 1.55 5.28 -2.38 -0.01 1.54 16 44 H 0.10 4.08 8.14 -2.39 -0.02 4.06 16 45 H 0.10 4.06 7.86 -2.39 -0.02 4.05 16 46 H 0.26 17.45 7.12 -92.71 -0.66 16.79 16 47 H 0.09 1.53 8.01 -2.39 -0.02 1.51 16 48 H 0.08 1.62 7.40 -2.39 -0.02 1.60 16 49 H 0.09 0.75 8.04 -2.39 -0.02 0.73 16 50 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 51 H 0.09 0.80 5.79 -2.38 -0.01 0.79 16 52 H 0.04 0.37 7.59 -2.39 -0.02 0.35 16 Total: -1.00 -77.08 394.97 1.97 -75.11 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 1.00 Total: 19.42 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: 6.11 Total: -18.31 kcal Atomic # 7 Polarization: -82.83 SS G_CDS: -6.05 Total: -88.87 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.04 Total: -27.17 kcal Atomic # 14 Polarization: 49.84 SS G_CDS: 2.05 Total: 51.90 kcal Atomic # 16 Polarization: -10.96 SS G_CDS: -1.11 Total: -12.07 kcal Total: -77.08 1.97 -75.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488973617.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.521 kcal (2) G-P(sol) polarization free energy of solvation -77.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds