Wall clock time and date at job start Sat Apr 11 2020 06:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47089 * 2 1 4 4 S 1.81405 * 109.47105 * 180.02562 * 3 2 1 5 5 C 1.81393 * 102.99963 * 179.97438 * 4 3 2 6 6 C 1.50709 * 109.46855 * 179.97438 * 5 4 3 7 7 O 1.21272 * 120.00114 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99822 * 179.97438 * 6 5 4 9 9 C 1.46494 * 120.00125 * 179.97438 * 8 6 5 10 10 H 1.08998 * 112.92590 * 23.68041 * 9 8 6 11 11 C 1.54158 * 113.64131 * 252.35051 * 9 8 6 12 12 H 1.08995 * 114.73337 * 26.76085 * 11 9 8 13 13 C 1.53051 * 111.68268 * 157.46212 * 11 9 8 14 14 C 1.53023 * 109.39593 * 146.42069 * 13 11 9 15 15 C 1.52947 * 108.93060 * 295.33473 * 14 13 11 16 16 N 1.45894 * 109.88723 * 57.34756 * 15 14 13 17 17 C 1.36936 * 118.48064 * 140.65778 * 16 15 14 18 18 H 1.08004 * 119.99825 * 207.87564 * 17 16 15 19 19 C 1.38811 * 120.00103 * 27.88052 * 17 16 15 20 20 N 1.31618 * 120.00522 * 14.44000 * 19 17 16 21 21 Si 1.86806 * 119.99611 * 194.44659 * 19 17 16 22 22 H 1.48505 * 109.47101 * 89.99972 * 21 19 17 23 23 H 1.48497 * 109.46709 * 209.99512 * 21 19 17 24 24 H 1.48494 * 109.47261 * 329.99475 * 21 19 17 25 25 C 1.45089 * 123.03082 * 320.67702 * 16 15 14 26 26 H 1.09003 * 112.25339 * 155.77919 * 25 16 15 27 27 C 1.53390 * 114.62995 * 286.22153 * 25 16 15 28 28 C 1.52995 * 113.68890 * 257.75865 * 27 25 16 29 29 C 1.53001 * 113.68395 * 28.79593 * 27 25 16 30 30 H 1.09000 * 109.46534 * 59.99987 * 1 2 3 31 31 H 1.09001 * 109.47118 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46924 * 300.00400 * 1 2 3 33 33 H 1.09001 * 109.46924 * 239.99600 * 2 1 3 34 34 H 1.08999 * 109.46709 * 119.99491 * 2 1 3 35 35 H 1.08996 * 109.47783 * 59.99556 * 3 2 1 36 36 H 1.09008 * 109.46879 * 299.99295 * 3 2 1 37 37 H 1.08997 * 109.47378 * 59.99998 * 5 4 3 38 38 H 1.09003 * 109.47550 * 299.99819 * 5 4 3 39 39 H 0.97008 * 120.00353 * 0.02562 * 8 6 5 40 40 H 1.08995 * 109.50266 * 26.42987 * 13 11 9 41 41 H 1.09001 * 109.48162 * 266.39282 * 13 11 9 42 42 H 1.08999 * 109.55829 * 175.50004 * 14 13 11 43 43 H 1.08998 * 109.56175 * 55.17161 * 14 13 11 44 44 H 1.09003 * 109.40107 * 297.21778 * 15 14 13 45 45 H 1.08995 * 109.32963 * 177.43061 * 15 14 13 46 46 H 0.96996 * 120.00573 * 180.02562 * 20 19 17 47 47 H 1.09005 * 109.47393 * 59.99502 * 28 27 25 48 48 H 1.09000 * 109.47110 * 299.99879 * 28 27 25 49 49 H 1.09001 * 109.47389 * 179.97438 * 28 27 25 50 50 H 1.09008 * 109.46860 * 266.23107 * 29 27 25 51 51 H 1.08991 * 109.47237 * 26.22845 * 29 27 25 52 52 H 1.08997 * 109.47102 * 146.23640 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 3.8541 1.4425 -0.0008 5 6 4.2621 3.2099 -0.0015 6 6 5.7596 3.3797 -0.0015 7 8 6.4805 2.4045 -0.0016 8 7 6.2977 4.6154 -0.0025 9 6 7.7533 4.7805 -0.0020 10 1 8.2790 3.9145 -0.4041 11 6 8.3186 5.2770 1.3435 12 1 7.7168 5.0178 2.2145 13 6 9.7984 4.9196 1.5015 14 6 10.5057 6.0218 2.2930 15 6 10.4718 7.3166 1.4795 16 7 9.0909 7.6742 1.1732 17 6 8.7312 8.9943 1.2260 18 1 7.7114 9.2674 1.4540 19 6 9.6771 9.9816 0.9865 20 7 10.8312 9.6680 0.4368 21 14 9.3121 11.7555 1.4446 22 1 9.7622 12.0099 2.8367 23 1 10.0329 12.6644 0.5174 24 1 7.8513 12.0023 1.3436 25 6 8.0813 6.6955 0.8155 26 1 7.0719 7.0465 1.0301 27 6 8.2226 6.1189 -0.5989 28 6 7.2421 6.7193 -1.6083 29 6 9.6641 6.0941 -1.1112 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6768 1.9562 -0.8901 37 1 3.8436 3.6798 0.8885 38 1 3.8429 3.6793 -0.8914 39 1 5.7211 5.3955 -0.0028 40 1 10.2575 4.8270 0.5173 41 1 9.8889 3.9735 2.0353 42 1 11.5406 5.7328 2.4760 43 1 9.9942 6.1743 3.2433 44 1 11.0239 7.1750 0.5504 45 1 10.9337 8.1175 2.0567 46 1 11.4923 10.3578 0.2698 47 1 7.4057 7.7947 -1.6783 48 1 6.2204 6.5278 -1.2804 49 1 7.4019 6.2634 -2.5854 50 1 9.8610 6.9992 -1.6860 51 1 10.3496 6.0445 -0.2653 52 1 9.8085 5.2210 -1.7476 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489080974.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:23 Heat of formation + Delta-G solvation = 10.440730 kcal Electronic energy + Delta-G solvation = -28722.112647 eV Core-core repulsion = 25042.356004 eV Total energy + Delta-G solvation = -3679.756644 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.93103 -38.93566 -35.35004 -35.02611 -33.30588 -32.64946 -30.60419 -30.15102 -29.52695 -27.62236 -26.82654 -25.39315 -24.48514 -22.46432 -22.12009 -21.21477 -20.49661 -19.33632 -17.73402 -17.11654 -16.73649 -16.53263 -15.94424 -15.69318 -15.37860 -14.78657 -14.48292 -14.23207 -14.03003 -13.89986 -13.80183 -13.54589 -13.21688 -13.08902 -12.78664 -12.57501 -12.47187 -12.12619 -12.09768 -11.85076 -11.65838 -11.51224 -11.36174 -11.21528 -11.15057 -11.03148 -10.86073 -10.77423 -10.50538 -10.21568 -10.12429 -10.00663 -9.97888 -9.68203 -9.54501 -9.37919 -9.07026 -8.63102 -8.37153 -7.83031 -6.63801 -5.79068 -3.24787 1.23354 2.32519 2.60008 3.23210 3.34630 3.42058 3.42607 4.42867 4.46804 4.49246 4.64467 4.76106 4.87788 4.96885 4.98665 5.02606 5.10884 5.22339 5.30353 5.30918 5.36959 5.47395 5.60114 5.61657 5.68302 5.71952 5.83187 5.83275 5.95031 6.02610 6.12170 6.18162 6.24462 6.31375 6.43076 6.46402 6.57098 6.58145 6.62893 6.74835 6.80048 6.83074 6.97436 7.12604 7.21116 7.42853 7.57473 7.73810 7.82113 8.24005 8.45032 9.23916 9.88936 10.33497 11.26585 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019561 B = 0.002442 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.051681 B =11462.363306 C =12084.202625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.108 4.108 4 S -0.185 6.185 5 C -0.128 4.128 6 C 0.529 3.471 7 O -0.522 6.522 8 N -0.701 5.701 9 C 0.125 3.875 10 H 0.096 0.904 11 C -0.129 4.129 12 H 0.068 0.932 13 C -0.107 4.107 14 C -0.144 4.144 15 C 0.178 3.822 16 N -0.569 5.569 17 C -0.262 4.262 18 H 0.063 0.937 19 C 0.008 3.992 20 N -0.900 5.900 21 Si 0.900 3.100 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.281 1.281 25 C 0.188 3.812 26 H 0.068 0.932 27 C -0.111 4.111 28 C -0.125 4.125 29 C -0.133 4.133 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.401 0.599 40 H 0.078 0.922 41 H 0.047 0.953 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.040 0.960 45 H 0.067 0.933 46 H 0.253 0.747 47 H 0.065 0.935 48 H 0.040 0.960 49 H 0.042 0.958 50 H 0.061 0.939 51 H 0.094 0.906 52 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.909 -13.478 -1.562 20.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.256 4.256 4 S 0.042 5.958 5 C -0.280 4.280 6 C 0.313 3.687 7 O -0.398 6.398 8 N -0.352 5.352 9 C 0.019 3.981 10 H 0.114 0.886 11 C -0.150 4.150 12 H 0.087 0.913 13 C -0.145 4.145 14 C -0.183 4.183 15 C 0.054 3.946 16 N -0.287 5.287 17 C -0.392 4.392 18 H 0.081 0.919 19 C -0.191 4.191 20 N -0.544 5.544 21 Si 0.730 3.270 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.206 1.206 25 C 0.077 3.923 26 H 0.085 0.915 27 C -0.115 4.115 28 C -0.183 4.183 29 C -0.190 4.190 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.237 0.763 40 H 0.097 0.903 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.058 0.942 45 H 0.085 0.915 46 H 0.063 0.937 47 H 0.084 0.916 48 H 0.059 0.941 49 H 0.061 0.939 50 H 0.080 0.920 51 H 0.112 0.888 52 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -13.516 -14.897 -1.593 20.177 hybrid contribution -1.426 2.611 0.173 2.980 sum -14.942 -12.286 -1.419 19.397 Atomic orbital electron populations 1.21768 0.94715 1.02125 1.02032 1.21224 0.95955 0.93929 1.03496 1.23580 0.95505 1.01681 1.04853 1.87539 1.04142 1.06103 1.98053 1.23510 0.98139 0.99289 1.07023 1.19575 0.88525 0.83794 0.76791 1.90738 1.61894 1.38450 1.48713 1.45685 1.08031 1.07179 1.74305 1.22358 0.78761 0.98929 0.98031 0.88602 1.23225 0.96674 0.98926 0.96194 0.91331 1.21549 0.93883 0.97671 1.01390 1.22067 0.98601 0.98035 0.99567 1.20643 0.85309 0.92190 0.96504 1.43205 1.05821 1.02435 1.77192 1.19197 0.95970 0.82062 1.41946 0.91917 1.25021 0.97410 0.97819 0.98818 1.70039 1.07591 1.32296 1.44431 0.86337 0.77620 0.85136 0.77883 1.21537 1.21836 1.20599 1.21253 0.93117 0.87478 0.90453 0.91456 1.22970 0.96151 0.93619 0.98754 1.21579 0.97203 1.01679 0.97838 1.21997 0.94837 1.00204 1.01972 0.92533 0.92122 0.92524 0.90940 0.90925 0.90148 0.90176 0.87293 0.87334 0.76316 0.90345 0.93468 0.92853 0.92915 0.94212 0.91487 0.93688 0.91645 0.94133 0.93904 0.91964 0.88761 0.94857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 37.16 0.37 -0.40 16 2 C -0.11 -0.74 5.94 -26.73 -0.16 -0.89 16 3 C -0.11 -0.81 5.94 37.16 0.22 -0.59 16 4 S -0.18 -2.12 20.87 -107.50 -2.24 -4.36 16 5 C -0.13 -1.30 6.42 36.01 0.23 -1.07 16 6 C 0.53 7.41 7.85 -10.98 -0.09 7.33 16 7 O -0.52 -9.46 15.46 5.56 0.09 -9.38 16 8 N -0.70 -9.40 4.67 -52.79 -0.25 -9.65 16 9 C 0.12 2.00 3.34 -66.88 -0.22 1.77 16 10 H 0.10 1.68 7.35 -51.93 -0.38 1.30 16 11 C -0.13 -2.23 4.12 -89.88 -0.37 -2.60 16 12 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 13 C -0.11 -1.85 5.17 -26.69 -0.14 -1.98 16 14 C -0.14 -2.68 6.04 -26.75 -0.16 -2.85 16 15 C 0.18 4.02 3.99 -4.40 -0.02 4.00 16 16 N -0.57 -13.06 2.66 -166.86 -0.44 -13.51 16 17 C -0.26 -6.72 9.45 -15.06 -0.14 -6.87 16 18 H 0.06 1.60 7.85 -52.48 -0.41 1.19 16 19 C 0.01 0.22 4.89 -17.43 -0.09 0.14 16 20 N -0.90 -24.65 11.04 55.49 0.61 -24.03 16 21 Si 0.90 21.01 29.58 -169.99 -5.03 15.98 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 C 0.19 3.60 3.34 -68.39 -0.23 3.37 16 26 H 0.07 1.28 7.87 -51.93 -0.41 0.87 16 27 C -0.11 -1.91 1.34 -153.85 -0.21 -2.12 16 28 C -0.13 -1.99 8.97 37.15 0.33 -1.66 16 29 C -0.13 -2.48 7.36 37.16 0.27 -2.20 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 37 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.11 0.86 8.14 -51.92 -0.42 0.44 16 39 H 0.40 4.53 6.80 -40.82 -0.28 4.26 16 40 H 0.08 1.35 4.69 -51.93 -0.24 1.11 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.04 0.96 5.62 -51.93 -0.29 0.67 16 45 H 0.07 1.71 6.61 -51.93 -0.34 1.37 16 46 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 47 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 48 H 0.04 0.54 5.91 -51.93 -0.31 0.23 16 49 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.06 1.29 8.05 -51.92 -0.42 0.87 16 51 H 0.09 1.84 1.95 -51.93 -0.10 1.74 16 52 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 400.98 15.07 6.04 6.04 Total: -1.00 -29.56 400.98 -10.69 -40.25 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -9.08 Total: 5.29 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -0.39 Total: -6.63 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: -0.08 Total: -47.19 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Atomic # 16 Polarization: -2.12 SS G_CDS: -2.24 Total: -4.36 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.56 -10.69 -40.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489080974.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.694 kcal (2) G-P(sol) polarization free energy of solvation -29.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds