Wall clock time and date at job start Sat Apr 11 2020 06:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47089 * 2 1 4 4 S 1.81405 * 109.47105 * 180.02562 * 3 2 1 5 5 C 1.81393 * 102.99963 * 179.97438 * 4 3 2 6 6 C 1.50709 * 109.46855 * 179.97438 * 5 4 3 7 7 O 1.21272 * 120.00114 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99822 * 179.97438 * 6 5 4 9 9 C 1.46494 * 120.00125 * 179.97438 * 8 6 5 10 10 H 1.08998 * 112.92590 * 23.68041 * 9 8 6 11 11 C 1.54158 * 113.64131 * 252.35051 * 9 8 6 12 12 H 1.08995 * 114.73337 * 26.76085 * 11 9 8 13 13 C 1.53051 * 111.68268 * 157.46212 * 11 9 8 14 14 C 1.53023 * 109.39593 * 146.42069 * 13 11 9 15 15 C 1.52947 * 108.93060 * 295.33473 * 14 13 11 16 16 N 1.45894 * 109.88723 * 57.34756 * 15 14 13 17 17 C 1.36936 * 118.48064 * 140.65778 * 16 15 14 18 18 H 1.08004 * 119.99825 * 207.87564 * 17 16 15 19 19 C 1.38811 * 120.00103 * 27.88052 * 17 16 15 20 20 N 1.31618 * 120.00522 * 14.44000 * 19 17 16 21 21 Si 1.86806 * 119.99611 * 194.44659 * 19 17 16 22 22 H 1.48505 * 109.47101 * 89.99972 * 21 19 17 23 23 H 1.48497 * 109.46709 * 209.99512 * 21 19 17 24 24 H 1.48494 * 109.47261 * 329.99475 * 21 19 17 25 25 C 1.45089 * 123.03082 * 320.67702 * 16 15 14 26 26 H 1.09003 * 112.25339 * 155.77919 * 25 16 15 27 27 C 1.53390 * 114.62995 * 286.22153 * 25 16 15 28 28 C 1.52995 * 113.68890 * 257.75865 * 27 25 16 29 29 C 1.53001 * 113.68395 * 28.79593 * 27 25 16 30 30 H 1.09000 * 109.46534 * 59.99987 * 1 2 3 31 31 H 1.09001 * 109.47118 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46924 * 300.00400 * 1 2 3 33 33 H 1.09001 * 109.46924 * 239.99600 * 2 1 3 34 34 H 1.08999 * 109.46709 * 119.99491 * 2 1 3 35 35 H 1.08996 * 109.47783 * 59.99556 * 3 2 1 36 36 H 1.09008 * 109.46879 * 299.99295 * 3 2 1 37 37 H 1.08997 * 109.47378 * 59.99998 * 5 4 3 38 38 H 1.09003 * 109.47550 * 299.99819 * 5 4 3 39 39 H 0.97008 * 120.00353 * 0.02562 * 8 6 5 40 40 H 1.08995 * 109.50266 * 26.42987 * 13 11 9 41 41 H 1.09001 * 109.48162 * 266.39282 * 13 11 9 42 42 H 1.08999 * 109.55829 * 175.50004 * 14 13 11 43 43 H 1.08998 * 109.56175 * 55.17161 * 14 13 11 44 44 H 1.09003 * 109.40107 * 297.21778 * 15 14 13 45 45 H 1.08995 * 109.32963 * 177.43061 * 15 14 13 46 46 H 0.96996 * 120.00573 * 180.02562 * 20 19 17 47 47 H 1.09005 * 109.47393 * 59.99502 * 28 27 25 48 48 H 1.09000 * 109.47110 * 299.99879 * 28 27 25 49 49 H 1.09001 * 109.47389 * 179.97438 * 28 27 25 50 50 H 1.09008 * 109.46860 * 266.23107 * 29 27 25 51 51 H 1.08991 * 109.47237 * 26.22845 * 29 27 25 52 52 H 1.08997 * 109.47102 * 146.23640 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 3.8541 1.4425 -0.0008 5 6 4.2621 3.2099 -0.0015 6 6 5.7596 3.3797 -0.0015 7 8 6.4805 2.4045 -0.0016 8 7 6.2977 4.6154 -0.0025 9 6 7.7533 4.7805 -0.0020 10 1 8.2790 3.9145 -0.4041 11 6 8.3186 5.2770 1.3435 12 1 7.7168 5.0178 2.2145 13 6 9.7984 4.9196 1.5015 14 6 10.5057 6.0218 2.2930 15 6 10.4718 7.3166 1.4795 16 7 9.0909 7.6742 1.1732 17 6 8.7312 8.9943 1.2260 18 1 7.7114 9.2674 1.4540 19 6 9.6771 9.9816 0.9865 20 7 10.8312 9.6680 0.4368 21 14 9.3121 11.7555 1.4446 22 1 9.7622 12.0099 2.8367 23 1 10.0329 12.6644 0.5174 24 1 7.8513 12.0023 1.3436 25 6 8.0813 6.6955 0.8155 26 1 7.0719 7.0465 1.0301 27 6 8.2226 6.1189 -0.5989 28 6 7.2421 6.7193 -1.6083 29 6 9.6641 6.0941 -1.1112 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6768 1.9562 -0.8901 37 1 3.8436 3.6798 0.8885 38 1 3.8429 3.6793 -0.8914 39 1 5.7211 5.3955 -0.0028 40 1 10.2575 4.8270 0.5173 41 1 9.8889 3.9735 2.0353 42 1 11.5406 5.7328 2.4760 43 1 9.9942 6.1743 3.2433 44 1 11.0239 7.1750 0.5504 45 1 10.9337 8.1175 2.0567 46 1 11.4923 10.3578 0.2698 47 1 7.4057 7.7947 -1.6783 48 1 6.2204 6.5278 -1.2804 49 1 7.4019 6.2634 -2.5854 50 1 9.8610 6.9992 -1.6860 51 1 10.3496 6.0445 -0.2653 52 1 9.8085 5.2210 -1.7476 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489080974.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:23 Heat of formation + Delta-G solvation = -4.877773 kcal Electronic energy + Delta-G solvation = -28722.776907 eV Core-core repulsion = 25042.356004 eV Total energy + Delta-G solvation = -3680.420904 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.34287 -40.16581 -36.95299 -35.54015 -34.85395 -34.05914 -32.29599 -31.54996 -30.69175 -28.26656 -28.11834 -27.15257 -26.00871 -24.07713 -22.93391 -22.51849 -21.60841 -20.82190 -19.18265 -18.68176 -18.11373 -17.56044 -16.94735 -16.69866 -16.54523 -16.15919 -15.98127 -15.53880 -15.50538 -14.94428 -14.80958 -14.61313 -14.34423 -14.22658 -14.12877 -13.86024 -13.69651 -13.55923 -13.25428 -13.17897 -12.91364 -12.83637 -12.74682 -12.57436 -12.43719 -12.35866 -12.07914 -12.04893 -11.97581 -11.70273 -11.57886 -11.41286 -11.13077 -11.02182 -10.97414 -10.84898 -10.61882 -10.33119 -9.88892 -8.67087 -8.51575 -7.77439 -5.24636 0.47513 1.47229 1.49806 1.53653 1.56464 1.62673 2.15546 2.54651 3.34654 3.55929 3.62739 3.73960 3.77443 3.92709 3.97561 3.98334 4.06372 4.09549 4.27395 4.29380 4.41325 4.42349 4.49759 4.58280 4.60350 4.69769 4.70400 4.75724 4.81322 4.86698 4.90669 4.95745 5.02041 5.11280 5.12699 5.16409 5.17295 5.21464 5.30423 5.32262 5.39946 5.40838 5.51861 5.57449 5.64332 5.72095 5.77060 5.99506 6.46563 6.49523 7.18180 7.26850 8.03781 8.41114 9.25065 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019561 B = 0.002442 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.051681 B =11462.363306 C =12084.202625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.108 4.108 3 C -0.087 4.087 4 S -0.259 6.259 5 C -0.111 4.111 6 C 0.528 3.472 7 O -0.565 6.565 8 N -0.692 5.692 9 C 0.145 3.855 10 H 0.086 0.914 11 C -0.124 4.124 12 H 0.073 0.927 13 C -0.104 4.104 14 C -0.133 4.133 15 C 0.188 3.812 16 N -0.581 5.581 17 C -0.262 4.262 18 H 0.064 0.936 19 C -0.043 4.043 20 N -0.927 5.927 21 Si 0.956 3.044 22 H -0.291 1.291 23 H -0.300 1.300 24 H -0.270 1.270 25 C 0.174 3.826 26 H 0.073 0.927 27 C -0.107 4.107 28 C -0.121 4.121 29 C -0.129 4.129 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.414 0.586 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.049 0.951 44 H 0.020 0.980 45 H 0.029 0.971 46 H 0.246 0.754 47 H 0.038 0.962 48 H 0.070 0.930 49 H 0.052 0.948 50 H 0.031 0.969 51 H 0.084 0.916 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.805 -14.319 -1.413 22.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.147 4.147 3 C -0.235 4.235 4 S -0.033 6.033 5 C -0.262 4.262 6 C 0.314 3.686 7 O -0.444 6.444 8 N -0.344 5.344 9 C 0.038 3.962 10 H 0.104 0.896 11 C -0.145 4.145 12 H 0.091 0.909 13 C -0.142 4.142 14 C -0.172 4.172 15 C 0.064 3.936 16 N -0.299 5.299 17 C -0.393 4.393 18 H 0.082 0.918 19 C -0.239 4.239 20 N -0.573 5.573 21 Si 0.786 3.214 22 H -0.218 1.218 23 H -0.227 1.227 24 H -0.195 1.195 25 C 0.065 3.935 26 H 0.091 0.909 27 C -0.111 4.111 28 C -0.178 4.178 29 C -0.186 4.186 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.153 0.847 38 H 0.155 0.845 39 H 0.252 0.748 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.068 0.932 44 H 0.038 0.962 45 H 0.047 0.953 46 H 0.055 0.945 47 H 0.057 0.943 48 H 0.088 0.912 49 H 0.071 0.929 50 H 0.050 0.950 51 H 0.102 0.898 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.466 -15.741 -1.442 22.825 hybrid contribution -0.565 2.818 0.131 2.877 sum -17.032 -12.923 -1.311 21.420 Atomic orbital electron populations 1.21739 0.93175 1.02693 1.02595 1.21245 0.97094 0.93547 1.02806 1.23596 0.91564 1.02253 1.06124 1.87845 1.08740 1.08431 1.98293 1.23435 0.94992 0.98143 1.09633 1.20192 0.90092 0.82936 0.75360 1.90729 1.63349 1.39811 1.50515 1.45557 1.06935 1.07877 1.74032 1.21954 0.80381 0.97380 0.96449 0.89573 1.23178 0.96944 0.97323 0.97042 0.90870 1.21521 0.93643 0.97712 1.01315 1.21925 1.00003 0.96484 0.98783 1.20376 0.84949 0.92762 0.95559 1.43345 1.06435 1.02367 1.77775 1.19476 0.95865 0.83511 1.40460 0.91839 1.25653 0.97613 1.00993 0.99620 1.70188 1.08315 1.32709 1.46051 0.85433 0.77716 0.81294 0.76944 1.21833 1.22660 1.19475 1.21508 0.92331 0.87633 0.92022 0.90942 1.22816 0.95876 0.94422 0.98017 1.21533 0.98430 0.99796 0.98089 1.21911 0.95706 0.99460 1.01502 0.91911 0.91647 0.91966 0.91671 0.91731 0.88848 0.88764 0.84670 0.84480 0.74791 0.90441 0.91611 0.91172 0.93171 0.96190 0.95284 0.94488 0.94285 0.91169 0.92929 0.95009 0.89794 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.91 71.98 0.71 -0.43 16 2 C -0.11 -1.28 5.94 30.60 0.18 -1.10 16 3 C -0.09 -1.08 5.94 71.98 0.43 -0.65 16 4 S -0.26 -5.50 20.87 -56.49 -1.18 -6.68 16 5 C -0.11 -1.88 6.42 71.24 0.46 -1.42 16 6 C 0.53 13.44 7.85 87.66 0.69 14.12 16 7 O -0.57 -19.72 15.46 -3.00 -0.05 -19.76 16 8 N -0.69 -16.53 4.67 -439.32 -2.05 -18.58 16 9 C 0.15 4.35 3.34 45.67 0.15 4.50 16 10 H 0.09 2.86 7.35 -2.39 -0.02 2.85 16 11 C -0.12 -4.06 4.12 -10.31 -0.04 -4.10 16 12 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 13 C -0.10 -3.45 5.17 30.62 0.16 -3.29 16 14 C -0.13 -4.91 6.04 30.58 0.18 -4.73 16 15 C 0.19 8.71 3.99 86.48 0.35 9.06 16 16 N -0.58 -26.90 2.66 -681.82 -1.81 -28.71 16 17 C -0.26 -13.60 9.45 84.03 0.79 -12.81 16 18 H 0.06 3.22 7.85 -2.91 -0.02 3.20 16 19 C -0.04 -2.30 4.89 84.86 0.42 -1.88 16 20 N -0.93 -52.62 11.04 21.65 0.24 -52.38 16 21 Si 0.96 43.87 29.58 68.60 2.03 45.90 16 22 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 23 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 25 C 0.17 6.51 3.34 45.45 0.15 6.66 16 26 H 0.07 2.62 7.87 -2.39 -0.02 2.60 16 27 C -0.11 -3.60 1.34 -51.76 -0.07 -3.67 16 28 C -0.12 -3.65 8.97 71.98 0.65 -3.00 16 29 C -0.13 -4.81 7.36 71.98 0.53 -4.28 16 30 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.41 7.80 6.80 -92.70 -0.63 7.17 16 40 H 0.08 2.60 4.69 -2.39 -0.01 2.59 16 41 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.02 1.01 5.62 -2.39 -0.01 1.00 16 45 H 0.03 1.53 6.61 -2.39 -0.02 1.52 16 46 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 47 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 48 H 0.07 1.65 5.91 -2.39 -0.01 1.64 16 49 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 50 H 0.03 1.34 8.05 -2.38 -0.02 1.33 16 51 H 0.08 3.32 1.95 -2.39 0.00 3.32 16 52 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -66.38 400.98 3.18 -63.20 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 0.27 Total: 24.03 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 5.74 Total: -7.02 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -3.63 Total: -99.67 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.05 Total: -19.76 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -5.50 SS G_CDS: -1.18 Total: -6.68 kcal Total: -66.38 3.18 -63.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489080974.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.324 kcal (2) G-P(sol) polarization free energy of solvation -66.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds