Wall clock time and date at job start Sat Apr 11 2020 06:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47106 * 2 1 4 4 S 1.81395 * 109.47447 * 180.02562 * 3 2 1 5 5 C 1.81399 * 103.00282 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47188 * 179.97438 * 5 4 3 7 7 O 1.21282 * 119.99838 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00489 * 179.97438 * 6 5 4 9 9 C 1.47557 * 118.62182 * 0.87027 * 8 6 5 10 10 C 1.53949 * 112.16823 * 137.84559 * 9 8 6 11 11 C 1.50878 * 110.15580 * 319.38191 * 10 9 8 12 12 C 1.52609 * 109.35967 * 91.87376 * 11 10 9 13 13 C 1.47090 * 114.27146 * 275.22738 * 12 11 10 14 14 C 1.54252 * 112.36172 * 301.69000 * 13 12 11 15 15 C 1.54393 * 104.94888 * 237.63506 * 14 13 12 16 16 N 1.48149 * 104.62081 * 23.86648 * 15 14 13 17 17 C 1.36938 * 127.83606 * 140.43053 * 16 15 14 18 18 H 1.07998 * 119.99874 * 344.36873 * 17 16 15 19 19 C 1.38814 * 119.99756 * 164.36554 * 17 16 15 20 20 N 1.31620 * 120.00121 * 350.59882 * 19 17 16 21 21 Si 1.86805 * 119.99732 * 170.60486 * 19 17 16 22 22 H 1.48495 * 109.47342 * 59.99630 * 21 19 17 23 23 H 1.48501 * 109.46875 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46998 * 299.99507 * 21 19 17 25 25 C 1.48155 * 104.32940 * 320.44218 * 16 15 14 26 26 C 1.44584 * 118.64004 * 180.88430 * 8 6 5 27 27 H 1.09007 * 109.47428 * 299.99505 * 1 2 3 28 28 H 1.08999 * 109.47464 * 60.00098 * 1 2 3 29 29 H 1.09004 * 109.47267 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46754 * 240.00492 * 2 1 3 31 31 H 1.08993 * 109.47152 * 120.00182 * 2 1 3 32 32 H 1.08998 * 109.47171 * 59.99860 * 3 2 1 33 33 H 1.09007 * 109.47227 * 300.00298 * 3 2 1 34 34 H 1.08998 * 109.46892 * 59.99476 * 5 4 3 35 35 H 1.09001 * 109.46560 * 299.99872 * 5 4 3 36 36 H 1.09003 * 108.94592 * 17.15237 * 9 8 6 37 37 H 1.09004 * 108.87502 * 258.48851 * 9 8 6 38 38 H 1.09000 * 109.35632 * 199.17909 * 10 9 8 39 39 H 1.09001 * 109.24438 * 79.52420 * 10 9 8 40 40 H 1.08994 * 109.49207 * 331.90333 * 11 10 9 41 41 H 1.09005 * 109.48813 * 211.83665 * 11 10 9 42 42 H 1.09005 * 108.52138 * 153.99606 * 12 11 10 43 43 H 1.08992 * 108.40693 * 36.38256 * 12 11 10 44 44 H 1.09000 * 110.34133 * 356.49965 * 14 13 12 45 45 H 1.09001 * 110.34587 * 118.76397 * 14 13 12 46 46 H 1.09000 * 110.40805 * 142.65257 * 15 14 13 47 47 H 1.09008 * 110.40698 * 264.96786 * 15 14 13 48 48 H 0.97001 * 119.99949 * 180.02562 * 20 19 17 49 49 H 1.09003 * 110.40804 * 280.75974 * 25 16 15 50 50 H 1.08999 * 110.40868 * 158.32942 * 25 16 15 51 51 H 1.09003 * 109.46501 * 150.56182 * 26 8 6 52 52 H 1.09000 * 109.46291 * 30.58480 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 16 3.8539 1.4426 -0.0008 5 6 4.2619 3.2101 0.0001 6 6 5.7593 3.3800 0.0002 7 8 6.4802 2.4047 0.0002 8 7 6.2974 4.6157 0.0003 9 6 5.3922 5.7808 0.0200 10 6 5.8837 6.8821 0.9769 11 6 6.4225 6.2669 2.2447 12 6 7.9231 6.0325 2.0953 13 6 8.2744 4.7669 1.4332 14 6 7.7071 3.5392 2.1750 15 6 8.9396 2.6717 2.5100 16 7 10.0751 3.6232 2.5200 17 6 11.1381 3.6535 3.3827 18 1 11.0971 3.1009 4.3097 19 6 12.2683 4.3945 3.0657 20 7 12.3981 4.9152 1.8639 21 14 13.6050 4.6525 4.3449 22 1 14.1461 3.3359 4.7678 23 1 14.6968 5.4727 3.7613 24 1 13.0344 5.3546 5.5225 25 6 9.7996 4.5348 1.3850 26 6 7.7374 4.7445 -0.0192 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6765 1.9564 -0.8900 34 1 3.8433 3.6791 0.8905 35 1 3.8426 3.6801 -0.8895 36 1 4.4015 5.4540 0.3358 37 1 5.3244 6.1917 -0.9873 38 1 5.0537 7.5450 1.2215 39 1 6.6726 7.4554 0.4898 40 1 5.9225 5.3160 2.4286 41 1 6.2414 6.9412 3.0817 42 1 8.3754 6.0416 3.0870 43 1 8.3439 6.8546 1.5164 44 1 7.2021 3.8493 3.0898 45 1 7.0212 2.9902 1.5299 46 1 8.8233 2.2085 3.4898 47 1 9.0870 1.9093 1.7450 48 1 13.1881 5.4327 1.6423 49 1 10.0830 4.0652 0.4429 50 1 10.3319 5.4769 1.5162 51 1 8.0124 5.6714 -0.5225 52 1 8.1704 3.8989 -0.5535 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500155664.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:46 Heat of formation + Delta-G solvation = -0.425053 kcal Electronic energy + Delta-G solvation = -29233.274956 eV Core-core repulsion = 25553.047137 eV Total energy + Delta-G solvation = -3680.227819 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.83087 -38.03493 -36.23874 -34.99500 -33.59245 -32.76729 -31.13098 -30.13981 -28.02648 -27.62547 -27.17660 -25.40667 -24.55138 -23.12735 -22.02124 -21.01128 -20.25484 -19.13755 -17.94346 -17.33300 -16.81413 -16.51305 -16.29558 -15.69843 -15.50065 -14.78239 -14.70989 -14.34437 -14.04276 -13.87935 -13.80072 -13.66976 -13.63418 -13.07346 -12.79751 -12.71064 -12.65076 -12.52111 -12.02550 -11.78795 -11.72171 -11.48125 -11.27333 -11.17749 -11.04360 -10.93737 -10.85797 -10.73383 -10.50933 -10.17135 -10.04872 -10.01227 -9.85520 -9.71929 -9.65465 -9.46836 -9.39946 -8.55932 -8.25366 -7.77215 -6.67800 -5.67180 -2.98863 1.28160 2.37144 2.58468 3.09119 3.44975 3.48986 3.50387 4.30587 4.47727 4.52540 4.57271 4.60158 4.74803 4.88185 4.90954 4.94503 5.05146 5.09597 5.22388 5.24559 5.31855 5.33831 5.43656 5.53161 5.60394 5.63469 5.68587 5.72085 5.81552 5.86314 5.86921 5.95767 6.10821 6.17061 6.25483 6.27967 6.30954 6.47208 6.63784 6.80484 6.85304 6.90251 7.04364 7.05183 7.29847 7.37654 7.51805 7.68226 7.83332 8.20975 8.36298 9.25089 9.88256 10.69373 11.47198 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017473 B = 0.002846 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.118925 B = 9835.941954 C =10762.666746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C -0.108 4.108 4 S -0.182 6.182 5 C -0.127 4.127 6 C 0.521 3.479 7 O -0.498 6.498 8 N -0.594 5.594 9 C 0.107 3.893 10 C -0.130 4.130 11 C -0.116 4.116 12 C -0.093 4.093 13 C -0.090 4.090 14 C -0.149 4.149 15 C 0.130 3.870 16 N -0.596 5.596 17 C -0.218 4.218 18 H 0.073 0.927 19 C -0.009 4.009 20 N -0.918 5.918 21 Si 0.909 3.091 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.174 3.826 26 C 0.127 3.873 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.053 0.947 44 H 0.042 0.958 45 H 0.095 0.905 46 H 0.036 0.964 47 H 0.022 0.978 48 H 0.252 0.748 49 H 0.020 0.980 50 H 0.083 0.917 51 H 0.070 0.930 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.112 1.467 -6.160 25.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.256 4.256 4 S 0.045 5.955 5 C -0.278 4.278 6 C 0.308 3.692 7 O -0.375 6.375 8 N -0.327 5.327 9 C -0.016 4.016 10 C -0.168 4.168 11 C -0.154 4.154 12 C -0.131 4.131 13 C -0.093 4.093 14 C -0.188 4.188 15 C 0.004 3.996 16 N -0.320 5.320 17 C -0.346 4.346 18 H 0.090 0.910 19 C -0.206 4.206 20 N -0.565 5.565 21 Si 0.739 3.261 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.213 1.213 25 C 0.047 3.953 26 C 0.004 3.996 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.113 0.887 46 H 0.055 0.945 47 H 0.039 0.961 48 H 0.062 0.938 49 H 0.038 0.962 50 H 0.101 0.899 51 H 0.089 0.911 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -23.736 0.215 -6.137 24.517 hybrid contribution -0.105 1.510 0.680 1.659 sum -23.841 1.725 -5.457 24.518 Atomic orbital electron populations 1.21764 0.94781 1.02120 1.01937 1.21221 0.95883 0.93953 1.03589 1.23567 0.95748 1.01663 1.04659 1.87678 1.03848 1.06018 1.98001 1.23591 0.98524 0.99198 1.06480 1.19550 0.88550 0.83804 0.77328 1.90723 1.61388 1.38082 1.47277 1.47688 1.07503 1.04912 1.72572 1.22005 0.92724 0.87034 0.99813 1.21782 1.01452 0.97084 0.96526 1.21102 0.97392 1.00576 0.96284 1.20294 0.94058 0.97024 1.01678 1.21241 1.00114 0.94863 0.93090 1.23277 0.99362 0.96680 0.99439 1.21610 0.88045 0.92431 0.97539 1.44942 1.23070 1.30054 1.33931 1.18958 0.91729 1.26677 0.97263 0.90962 1.24848 0.97219 1.02059 0.96454 1.69895 1.28819 1.39634 1.18155 0.86249 0.81415 0.77749 0.80665 1.21137 1.21675 1.21302 1.21507 0.87325 0.96402 0.90041 1.21823 0.77380 1.02353 0.98039 0.92559 0.92604 0.92128 0.90927 0.90845 0.90247 0.90323 0.87483 0.87626 0.90699 0.91777 0.91061 0.91137 0.91816 0.92400 0.91773 0.92835 0.93921 0.88730 0.94524 0.96061 0.93790 0.96228 0.89864 0.91124 0.89670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 37.15 0.37 -0.43 16 2 C -0.11 -0.77 5.94 -26.73 -0.16 -0.93 16 3 C -0.11 -0.83 5.94 37.16 0.22 -0.61 16 4 S -0.18 -2.16 20.87 -107.50 -2.24 -4.40 16 5 C -0.13 -1.29 4.76 36.00 0.17 -1.12 16 6 C 0.52 7.41 6.23 -10.99 -0.07 7.34 16 7 O -0.50 -9.30 12.93 5.56 0.07 -9.23 16 8 N -0.59 -7.73 2.04 -172.57 -0.35 -8.08 16 9 C 0.11 0.97 5.95 -2.97 -0.02 0.95 16 10 C -0.13 -1.24 5.71 -27.30 -0.16 -1.40 16 11 C -0.12 -1.47 5.35 -28.00 -0.15 -1.62 16 12 C -0.09 -1.56 3.85 -29.77 -0.11 -1.68 16 13 C -0.09 -1.71 0.67 -155.00 -0.10 -1.81 16 14 C -0.15 -2.98 5.19 -25.35 -0.13 -3.11 16 15 C 0.13 3.09 7.23 -2.40 -0.02 3.08 16 16 N -0.60 -16.11 3.38 -168.87 -0.57 -16.68 16 17 C -0.22 -6.33 10.35 -15.06 -0.16 -6.48 16 18 H 0.07 2.05 7.85 -52.49 -0.41 1.64 16 19 C -0.01 -0.27 5.40 -17.43 -0.09 -0.37 16 20 N -0.92 -27.50 10.88 55.49 0.60 -26.90 16 21 Si 0.91 22.64 29.56 -169.99 -5.03 17.61 16 22 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 C 0.17 4.26 5.00 -2.42 -0.01 4.25 16 26 C 0.13 2.05 4.36 -4.08 -0.02 2.03 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.52 8.14 -51.92 -0.42 0.09 16 34 H 0.11 0.90 7.37 -51.93 -0.38 0.51 16 35 H 0.11 0.82 8.05 -51.92 -0.42 0.40 16 36 H 0.07 0.52 5.82 -51.93 -0.30 0.21 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.71 7.31 -51.93 -0.38 0.33 16 40 H 0.06 0.86 6.06 -51.93 -0.31 0.54 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.05 0.87 7.37 -51.93 -0.38 0.49 16 44 H 0.04 0.83 6.97 -51.93 -0.36 0.47 16 45 H 0.10 1.85 2.71 -53.33 -0.14 1.71 16 46 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.02 0.54 8.14 -51.92 -0.42 0.12 16 48 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 49 H 0.02 0.52 7.48 -51.93 -0.39 0.13 16 50 H 0.08 2.24 6.27 -51.93 -0.33 1.92 16 51 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 52 H 0.09 1.59 6.90 -51.93 -0.36 1.24 16 LS Contribution 395.24 15.07 5.96 5.96 Total: -1.00 -33.44 395.24 -11.22 -44.66 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -9.22 Total: -1.03 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -0.44 Total: -1.91 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: -0.32 Total: -51.66 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.07 Total: -9.23 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.03 Total: 17.61 kcal Atomic # 16 Polarization: -2.16 SS G_CDS: -2.24 Total: -4.40 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.44 -11.22 -44.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500155664.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.231 kcal (2) G-P(sol) polarization free energy of solvation -33.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds