Wall clock time and date at job start Sat Apr 11 2020 06:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47106 * 2 1 4 4 S 1.81395 * 109.47447 * 180.02562 * 3 2 1 5 5 C 1.81399 * 103.00282 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47188 * 179.97438 * 5 4 3 7 7 O 1.21282 * 119.99838 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00489 * 179.97438 * 6 5 4 9 9 C 1.47557 * 118.62182 * 0.87027 * 8 6 5 10 10 C 1.53949 * 112.16823 * 137.84559 * 9 8 6 11 11 C 1.50878 * 110.15580 * 319.38191 * 10 9 8 12 12 C 1.52609 * 109.35967 * 91.87376 * 11 10 9 13 13 C 1.47090 * 114.27146 * 275.22738 * 12 11 10 14 14 C 1.54252 * 112.36172 * 301.69000 * 13 12 11 15 15 C 1.54393 * 104.94888 * 237.63506 * 14 13 12 16 16 N 1.48149 * 104.62081 * 23.86648 * 15 14 13 17 17 C 1.36938 * 127.83606 * 140.43053 * 16 15 14 18 18 H 1.07998 * 119.99874 * 344.36873 * 17 16 15 19 19 C 1.38814 * 119.99756 * 164.36554 * 17 16 15 20 20 N 1.31620 * 120.00121 * 350.59882 * 19 17 16 21 21 Si 1.86805 * 119.99732 * 170.60486 * 19 17 16 22 22 H 1.48495 * 109.47342 * 59.99630 * 21 19 17 23 23 H 1.48501 * 109.46875 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46998 * 299.99507 * 21 19 17 25 25 C 1.48155 * 104.32940 * 320.44218 * 16 15 14 26 26 C 1.44584 * 118.64004 * 180.88430 * 8 6 5 27 27 H 1.09007 * 109.47428 * 299.99505 * 1 2 3 28 28 H 1.08999 * 109.47464 * 60.00098 * 1 2 3 29 29 H 1.09004 * 109.47267 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46754 * 240.00492 * 2 1 3 31 31 H 1.08993 * 109.47152 * 120.00182 * 2 1 3 32 32 H 1.08998 * 109.47171 * 59.99860 * 3 2 1 33 33 H 1.09007 * 109.47227 * 300.00298 * 3 2 1 34 34 H 1.08998 * 109.46892 * 59.99476 * 5 4 3 35 35 H 1.09001 * 109.46560 * 299.99872 * 5 4 3 36 36 H 1.09003 * 108.94592 * 17.15237 * 9 8 6 37 37 H 1.09004 * 108.87502 * 258.48851 * 9 8 6 38 38 H 1.09000 * 109.35632 * 199.17909 * 10 9 8 39 39 H 1.09001 * 109.24438 * 79.52420 * 10 9 8 40 40 H 1.08994 * 109.49207 * 331.90333 * 11 10 9 41 41 H 1.09005 * 109.48813 * 211.83665 * 11 10 9 42 42 H 1.09005 * 108.52138 * 153.99606 * 12 11 10 43 43 H 1.08992 * 108.40693 * 36.38256 * 12 11 10 44 44 H 1.09000 * 110.34133 * 356.49965 * 14 13 12 45 45 H 1.09001 * 110.34587 * 118.76397 * 14 13 12 46 46 H 1.09000 * 110.40805 * 142.65257 * 15 14 13 47 47 H 1.09008 * 110.40698 * 264.96786 * 15 14 13 48 48 H 0.97001 * 119.99949 * 180.02562 * 20 19 17 49 49 H 1.09003 * 110.40804 * 280.75974 * 25 16 15 50 50 H 1.08999 * 110.40868 * 158.32942 * 25 16 15 51 51 H 1.09003 * 109.46501 * 150.56182 * 26 8 6 52 52 H 1.09000 * 109.46291 * 30.58480 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 16 3.8539 1.4426 -0.0008 5 6 4.2619 3.2101 0.0001 6 6 5.7593 3.3800 0.0002 7 8 6.4802 2.4047 0.0002 8 7 6.2974 4.6157 0.0003 9 6 5.3922 5.7808 0.0200 10 6 5.8837 6.8821 0.9769 11 6 6.4225 6.2669 2.2447 12 6 7.9231 6.0325 2.0953 13 6 8.2744 4.7669 1.4332 14 6 7.7071 3.5392 2.1750 15 6 8.9396 2.6717 2.5100 16 7 10.0751 3.6232 2.5200 17 6 11.1381 3.6535 3.3827 18 1 11.0971 3.1009 4.3097 19 6 12.2683 4.3945 3.0657 20 7 12.3981 4.9152 1.8639 21 14 13.6050 4.6525 4.3449 22 1 14.1461 3.3359 4.7678 23 1 14.6968 5.4727 3.7613 24 1 13.0344 5.3546 5.5225 25 6 9.7996 4.5348 1.3850 26 6 7.7374 4.7445 -0.0192 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6765 1.9564 -0.8900 34 1 3.8433 3.6791 0.8905 35 1 3.8426 3.6801 -0.8895 36 1 4.4015 5.4540 0.3358 37 1 5.3244 6.1917 -0.9873 38 1 5.0537 7.5450 1.2215 39 1 6.6726 7.4554 0.4898 40 1 5.9225 5.3160 2.4286 41 1 6.2414 6.9412 3.0817 42 1 8.3754 6.0416 3.0870 43 1 8.3439 6.8546 1.5164 44 1 7.2021 3.8493 3.0898 45 1 7.0212 2.9902 1.5299 46 1 8.8233 2.2085 3.4898 47 1 9.0870 1.9093 1.7450 48 1 13.1881 5.4327 1.6423 49 1 10.0830 4.0652 0.4429 50 1 10.3319 5.4769 1.5162 51 1 8.0124 5.6714 -0.5225 52 1 8.1704 3.8989 -0.5535 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500155664.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:45 Heat of formation + Delta-G solvation = -19.362177 kcal Electronic energy + Delta-G solvation = -29234.096131 eV Core-core repulsion = 25553.047137 eV Total energy + Delta-G solvation = -3681.048995 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.06820 -39.48755 -37.61350 -35.52263 -35.07578 -34.29162 -32.83724 -31.16554 -29.96990 -28.59986 -28.12876 -26.81517 -26.10561 -24.66863 -22.65002 -22.34184 -21.95496 -20.22895 -19.37330 -18.87050 -18.31396 -17.59585 -17.47233 -16.69357 -16.57012 -16.28949 -16.08562 -15.68299 -15.22317 -15.09727 -14.77734 -14.69297 -14.45248 -14.36441 -14.16474 -14.10810 -13.94905 -13.45109 -13.32712 -13.18204 -12.89794 -12.80679 -12.64898 -12.39703 -12.31890 -12.11424 -12.05221 -12.00723 -11.89116 -11.79720 -11.68749 -11.47309 -11.22142 -11.21103 -11.14932 -10.79033 -10.73205 -10.71195 -9.48998 -8.88015 -8.64257 -7.90994 -5.27164 0.51779 1.42069 1.46077 1.52554 1.53268 1.67202 2.07660 2.47217 3.26957 3.41037 3.66561 3.71255 3.91738 3.94310 4.00550 4.04559 4.06983 4.10429 4.16474 4.23379 4.37716 4.43302 4.43919 4.48101 4.53092 4.60549 4.66562 4.71861 4.74781 4.77088 4.88019 4.90896 5.00367 5.07622 5.16071 5.19206 5.20805 5.23069 5.24097 5.35105 5.38888 5.40734 5.41348 5.43666 5.50096 5.67008 5.74167 5.78436 6.19830 6.35282 7.01626 7.15070 7.67883 8.50114 9.22164 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017473 B = 0.002846 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.118925 B = 9835.941954 C =10762.666746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 C -0.084 4.084 4 S -0.271 6.271 5 C -0.105 4.105 6 C 0.513 3.487 7 O -0.554 6.554 8 N -0.590 5.590 9 C 0.099 3.901 10 C -0.126 4.126 11 C -0.107 4.107 12 C -0.089 4.089 13 C -0.075 4.075 14 C -0.134 4.134 15 C 0.125 3.875 16 N -0.618 5.618 17 C -0.243 4.243 18 H 0.072 0.928 19 C -0.062 4.062 20 N -0.946 5.946 21 Si 0.981 3.019 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.276 1.276 25 C 0.180 3.820 26 C 0.140 3.860 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.026 0.974 43 H 0.056 0.944 44 H 0.049 0.951 45 H 0.107 0.893 46 H 0.036 0.964 47 H -0.001 1.001 48 H 0.250 0.750 49 H -0.013 1.013 50 H 0.054 0.946 51 H 0.089 0.911 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.860 3.697 -6.042 29.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C -0.232 4.232 4 S -0.045 6.045 5 C -0.255 4.255 6 C 0.302 3.698 7 O -0.434 6.434 8 N -0.321 5.321 9 C -0.022 4.022 10 C -0.164 4.164 11 C -0.144 4.144 12 C -0.127 4.127 13 C -0.078 4.078 14 C -0.172 4.172 15 C 0.000 4.000 16 N -0.343 5.343 17 C -0.372 4.372 18 H 0.090 0.910 19 C -0.255 4.255 20 N -0.593 5.593 21 Si 0.808 3.192 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.202 1.202 25 C 0.054 3.946 26 C 0.015 3.985 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.154 0.846 35 H 0.159 0.841 36 H 0.127 0.873 37 H 0.109 0.891 38 H 0.127 0.873 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.045 0.955 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.124 0.876 46 H 0.055 0.945 47 H 0.017 0.983 48 H 0.059 0.941 49 H 0.005 0.995 50 H 0.073 0.927 51 H 0.107 0.893 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -27.540 2.470 -6.019 28.298 hybrid contribution 1.083 0.745 0.620 1.453 sum -26.457 3.214 -5.399 27.193 Atomic orbital electron populations 1.21728 0.93012 1.02633 1.02698 1.21247 0.97207 0.93793 1.02606 1.23565 0.91335 1.02041 1.06224 1.88088 1.08979 1.09135 1.98283 1.23509 0.94998 0.97579 1.09409 1.20332 0.90338 0.83204 0.75933 1.90707 1.63085 1.39957 1.49667 1.47742 1.06300 1.06338 1.71770 1.22416 0.92891 0.85365 1.01489 1.21778 1.02603 0.97448 0.94568 1.21024 0.93423 1.01061 0.98928 1.20274 0.97670 0.95633 0.99106 1.21030 0.95675 0.95641 0.95468 1.23180 0.97576 0.96409 1.00074 1.21706 0.89073 0.92433 0.96832 1.45268 1.23473 1.31368 1.34157 1.19314 0.92887 1.27133 0.97817 0.90999 1.25734 0.99472 1.01747 0.98592 1.70102 1.29267 1.40015 1.19949 0.85133 0.78171 0.77749 0.78137 1.20407 1.21496 1.20173 1.21368 0.91274 0.94086 0.87866 1.21375 0.79886 1.01820 0.95392 0.91863 0.91691 0.91855 0.91866 0.92078 0.88722 0.88464 0.84604 0.84130 0.87314 0.89123 0.87280 0.91613 0.92258 0.91071 0.95493 0.92487 0.93203 0.87550 0.94502 0.98316 0.94094 0.99545 0.92715 0.89272 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.91 71.98 0.71 -0.47 16 2 C -0.11 -1.41 5.94 30.59 0.18 -1.23 16 3 C -0.08 -1.05 5.94 71.98 0.43 -0.62 16 4 S -0.27 -6.13 20.87 -56.49 -1.18 -7.31 16 5 C -0.10 -1.76 4.76 71.23 0.34 -1.42 16 6 C 0.51 13.79 6.23 87.66 0.55 14.34 16 7 O -0.55 -21.19 12.93 -3.04 -0.04 -21.23 16 8 N -0.59 -14.01 2.04 -818.28 -1.67 -15.68 16 9 C 0.10 1.27 5.95 86.50 0.51 1.78 16 10 C -0.13 -1.79 5.71 30.22 0.17 -1.62 16 11 C -0.11 -2.38 5.35 29.77 0.16 -2.22 16 12 C -0.09 -2.98 3.85 28.63 0.11 -2.87 16 13 C -0.08 -2.94 0.67 -52.50 -0.04 -2.97 16 14 C -0.13 -5.52 5.19 31.49 0.16 -5.36 16 15 C 0.13 6.33 7.23 86.54 0.63 6.96 16 16 N -0.62 -35.45 3.38 -688.17 -2.33 -37.78 16 17 C -0.24 -14.74 10.35 84.03 0.87 -13.87 16 18 H 0.07 4.24 7.85 -2.91 -0.02 4.22 16 19 C -0.06 -3.70 5.40 84.86 0.46 -3.24 16 20 N -0.95 -59.11 10.88 21.65 0.24 -58.88 16 21 Si 0.98 47.67 29.56 68.60 2.03 49.70 16 22 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 23 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 24 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 25 C 0.18 9.46 5.00 86.52 0.43 9.89 16 26 C 0.14 4.55 4.36 87.37 0.38 4.93 16 27 H 0.06 0.45 8.14 -2.38 -0.02 0.44 16 28 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.14 1.55 7.37 -2.39 -0.02 1.53 16 35 H 0.14 1.42 8.05 -2.39 -0.02 1.40 16 36 H 0.11 0.73 5.82 -2.39 -0.01 0.72 16 37 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.07 1.05 7.31 -2.39 -0.02 1.03 16 40 H 0.06 1.40 6.06 -2.39 -0.01 1.38 16 41 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 42 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 43 H 0.06 1.84 7.37 -2.39 -0.02 1.82 16 44 H 0.05 1.95 6.97 -2.39 -0.02 1.93 16 45 H 0.11 4.25 2.71 -24.51 -0.07 4.19 16 46 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.00 -0.06 8.14 -2.38 -0.02 -0.08 16 48 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 49 H -0.01 -0.77 7.48 -2.39 -0.02 -0.79 16 50 H 0.05 3.15 6.27 -2.39 -0.01 3.13 16 51 H 0.09 2.55 8.08 -2.39 -0.02 2.54 16 52 H 0.05 2.04 6.90 -2.39 -0.02 2.02 16 Total: -1.00 -80.75 395.24 3.93 -76.82 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 0.82 Total: 12.36 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 6.06 Total: 2.00 kcal Atomic # 7 Polarization: -108.58 SS G_CDS: -3.76 Total: -112.33 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.04 Total: -21.23 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.70 kcal Atomic # 16 Polarization: -6.13 SS G_CDS: -1.18 Total: -7.31 kcal Total: -80.75 3.93 -76.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500155664.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.455 kcal (2) G-P(sol) polarization free energy of solvation -80.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds