Wall clock time and date at job start Sat Apr 11 2020 06:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47500 * 2 1 4 4 N 1.46901 * 109.47263 * 120.00318 * 2 1 3 5 5 C 1.47843 * 111.00219 * 178.48421 * 4 2 1 6 6 C 1.54905 * 104.89488 * 213.57865 * 5 4 2 7 7 C 1.55434 * 101.52249 * 37.06333 * 6 5 4 8 8 H 1.09005 * 110.69029 * 82.75515 * 7 6 5 9 9 C 1.52996 * 110.84635 * 205.90549 * 7 6 5 10 10 H 1.08998 * 109.49703 * 53.64770 * 9 7 6 11 11 C 1.53042 * 109.49520 * 293.54964 * 9 7 6 12 12 C 1.53043 * 109.53765 * 178.68482 * 11 9 7 13 13 C 1.53193 * 109.31563 * 61.36125 * 12 11 9 14 14 N 1.46931 * 108.77679 * 305.36846 * 13 12 11 15 15 C 1.34771 * 120.63212 * 233.58481 * 14 13 12 16 16 O 1.21277 * 120.00089 * 180.02562 * 15 14 13 17 17 C 1.50701 * 119.99721 * 0.02562 * 15 14 13 18 18 S 1.81004 * 109.47129 * 180.02562 * 17 15 14 19 19 C 1.76193 * 100.00339 * 179.97438 * 18 17 15 20 20 H 1.08008 * 119.99686 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00449 * 179.97438 * 19 18 17 22 22 N 1.31634 * 119.99646 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00350 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47281 * 90.00051 * 23 21 19 25 25 H 1.48499 * 109.47238 * 210.00101 * 23 21 19 26 26 H 1.48497 * 109.47116 * 329.99892 * 23 21 19 27 27 C 1.46931 * 118.73340 * 53.60545 * 14 13 12 28 28 C 1.47447 * 110.99934 * 57.63904 * 4 2 1 29 29 H 1.08993 * 109.47240 * 293.77517 * 1 2 3 30 30 H 1.09002 * 109.46791 * 53.77936 * 1 2 3 31 31 H 1.09004 * 109.46885 * 173.77893 * 1 2 3 32 32 H 1.09007 * 109.47015 * 240.00046 * 2 1 3 33 33 H 1.09005 * 109.46944 * 300.00216 * 3 2 1 34 34 H 1.08995 * 109.46780 * 59.99597 * 3 2 1 35 35 H 1.08995 * 109.47481 * 180.02562 * 3 2 1 36 36 H 1.09004 * 110.37372 * 332.46200 * 5 4 2 37 37 H 1.09001 * 110.37397 * 94.69036 * 5 4 2 38 38 H 1.08999 * 110.99228 * 155.21343 * 6 5 4 39 39 H 1.09001 * 110.99303 * 279.03564 * 6 5 4 40 40 H 1.09000 * 109.46012 * 298.70121 * 11 9 7 41 41 H 1.09001 * 109.46219 * 58.66292 * 11 9 7 42 42 H 1.09006 * 109.49252 * 301.41536 * 12 11 9 43 43 H 1.08998 * 109.52841 * 181.33596 * 12 11 9 44 44 H 1.08999 * 109.58732 * 185.58081 * 13 12 11 45 45 H 1.08997 * 109.58221 * 65.15354 * 13 12 11 46 46 H 1.09000 * 109.47202 * 299.99493 * 17 15 14 47 47 H 1.08998 * 109.47375 * 60.00043 * 17 15 14 48 48 H 0.96998 * 120.00183 * 180.02562 * 22 21 19 49 49 H 1.09008 * 109.58048 * 186.60331 * 27 14 13 50 50 H 1.08997 * 109.58542 * 66.18332 * 27 14 13 51 51 H 1.08997 * 109.88848 * 242.66453 * 28 4 2 52 52 H 1.08998 * 109.89206 * 3.85696 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 3.4971 -0.7440 1.2154 6 6 3.8413 -2.0914 1.8978 7 6 2.7197 -3.0147 1.3449 8 1 2.9833 -3.3915 0.3566 9 6 2.4436 -4.1719 2.3070 10 1 2.2374 -3.7768 3.3016 11 6 3.6662 -5.0907 2.3649 12 6 3.4034 -6.2306 3.3518 13 6 2.2036 -7.0520 2.8695 14 7 1.0612 -6.1493 2.6720 15 6 -0.1219 -6.3987 3.2674 16 8 -1.0574 -5.6462 3.0962 17 6 -0.2822 -7.6125 4.1460 18 16 -1.9715 -7.6699 4.7934 19 6 -1.8806 -9.1430 5.7558 20 1 -0.9576 -9.7020 5.8015 21 6 -2.9947 -9.5845 6.4560 22 7 -4.1195 -8.9028 6.4007 23 14 -2.8981 -11.1458 7.4769 24 1 -2.4718 -10.8081 8.8587 25 1 -4.2329 -11.7954 7.5155 26 1 -1.9128 -12.0751 6.8681 27 6 1.2331 -4.9700 1.8127 28 6 1.5012 -2.0714 1.2621 29 1 -0.3633 0.4143 0.9404 30 1 -0.3633 0.6073 -0.8291 31 1 -0.3633 -1.0217 -0.1114 32 1 1.8933 -0.5139 -0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9562 0.8899 35 1 3.1300 1.4424 -0.0005 36 1 3.8887 -0.7228 0.1984 37 1 3.8996 0.0878 1.7936 38 1 4.8262 -2.4438 1.5916 39 1 3.7783 -2.0071 2.9827 40 1 3.8567 -5.5045 1.3747 41 1 4.5346 -4.5194 2.6928 42 1 3.1884 -5.8164 4.3369 43 1 4.2831 -6.8715 3.4107 44 1 1.9507 -7.8033 3.6176 45 1 2.4505 -7.5405 1.9269 46 1 -0.0865 -8.5120 3.5623 47 1 0.4232 -7.5567 4.9751 48 1 -4.8980 -9.2111 6.8903 49 1 0.3396 -4.3476 1.8636 50 1 1.4007 -5.2888 0.7840 51 1 0.8773 -2.1931 2.1475 52 1 0.9225 -2.2912 0.3649 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505469878.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:00 Heat of formation + Delta-G solvation = -69.005970 kcal Electronic energy + Delta-G solvation = -28011.289297 eV Core-core repulsion = 24328.087586 eV Total energy + Delta-G solvation = -3683.201711 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.41450 -40.34273 -38.42319 -35.91606 -34.59452 -33.76852 -32.64570 -30.98026 -30.25638 -28.88924 -27.70292 -27.53462 -26.07837 -24.35140 -22.67013 -22.26003 -21.19595 -20.58550 -20.34312 -19.45223 -18.19815 -17.29360 -16.93896 -16.88568 -16.81474 -16.43801 -15.80415 -15.67668 -15.28892 -15.12426 -14.91967 -14.53919 -14.35122 -14.30905 -14.14210 -14.01423 -13.76637 -13.45831 -13.36589 -13.17296 -13.15089 -12.98218 -12.89725 -12.64933 -12.48871 -12.28930 -12.16873 -12.03040 -11.88846 -11.79632 -11.72316 -11.71254 -11.58450 -11.46102 -11.15844 -11.14992 -10.82899 -10.27212 -9.64419 -9.22068 -8.68867 -8.35224 -6.14079 1.24719 1.42162 1.45257 1.55760 1.56715 2.10574 2.26724 2.98748 2.99822 3.24502 3.47120 3.62326 3.69855 3.77218 3.95713 4.02623 4.05876 4.09261 4.18352 4.24918 4.27728 4.33948 4.39128 4.41194 4.41987 4.49973 4.57774 4.62178 4.68641 4.73646 4.78683 4.86017 4.87898 4.93102 4.94405 4.97620 5.00729 5.06375 5.08658 5.13040 5.15260 5.28370 5.30115 5.37339 5.38608 5.40689 5.51387 5.58669 6.07149 6.18963 6.22459 6.29915 7.05615 7.14023 8.74122 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018490 B = 0.002258 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.972958 B =12396.890119 C =13540.779114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.070 3.930 3 C -0.139 4.139 4 N -0.541 5.541 5 C 0.043 3.957 6 C -0.115 4.115 7 C -0.091 4.091 8 H 0.091 0.909 9 C -0.079 4.079 10 H 0.055 0.945 11 C -0.106 4.106 12 C -0.131 4.131 13 C 0.096 3.904 14 N -0.606 5.606 15 C 0.530 3.470 16 O -0.569 6.569 17 C -0.121 4.121 18 S -0.155 6.155 19 C -0.545 4.545 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.257 1.257 27 C 0.115 3.885 28 C 0.045 3.955 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.042 0.958 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.053 0.947 43 H 0.103 0.897 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.107 0.893 47 H 0.105 0.895 48 H 0.271 0.729 49 H 0.063 0.937 50 H 0.081 0.919 51 H 0.052 0.948 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.899 13.227 -14.320 30.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.038 4.038 3 C -0.196 4.196 4 N -0.267 5.267 5 C -0.084 4.084 6 C -0.153 4.153 7 C -0.111 4.111 8 H 0.109 0.891 9 C -0.099 4.099 10 H 0.074 0.926 11 C -0.143 4.143 12 C -0.169 4.169 13 C -0.025 4.025 14 N -0.340 5.340 15 C 0.318 3.682 16 O -0.447 6.447 17 C -0.272 4.272 18 S 0.073 5.927 19 C -0.692 4.692 20 H 0.101 0.899 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.822 3.178 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.180 1.180 27 C -0.007 4.007 28 C -0.083 4.083 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.114 0.886 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.072 0.928 43 H 0.121 0.879 44 H 0.103 0.897 45 H 0.109 0.891 46 H 0.125 0.875 47 H 0.124 0.876 48 H 0.080 0.920 49 H 0.081 0.919 50 H 0.099 0.901 51 H 0.070 0.930 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 22.170 14.651 -14.123 30.094 hybrid contribution 0.394 -1.947 0.314 2.011 sum 22.564 12.704 -13.809 29.347 Atomic orbital electron populations 1.21921 0.94715 1.01627 1.02289 1.21839 0.95491 0.95891 0.90574 1.21803 1.01207 0.94360 1.02262 1.63645 1.08525 1.15536 1.38961 1.23062 0.86967 0.98447 0.99970 1.22784 0.98609 0.93454 1.00433 1.22366 0.95200 0.94139 0.99392 0.89114 1.21396 0.94970 0.94904 0.98584 0.92646 1.21557 0.96692 0.95768 1.00327 1.21923 0.97806 0.98121 0.99071 1.22089 0.85200 0.92256 1.02986 1.48118 1.10669 1.26951 1.48261 1.20160 0.82583 0.85857 0.79619 1.90669 1.40901 1.50011 1.63157 1.23353 1.02747 0.99362 1.01788 1.85614 1.10300 1.35494 1.61324 1.23184 1.01296 1.10723 1.34033 0.89868 1.26162 0.93877 1.01728 0.97512 1.70192 1.02434 1.40606 1.41588 0.84931 0.78082 0.76746 0.78088 1.19271 1.20294 1.18050 1.21730 0.99034 0.86333 0.93622 1.22850 0.97245 0.87513 1.00707 0.92952 0.90834 0.93488 0.93986 0.91187 0.92723 0.92091 0.92723 0.90174 0.88568 0.91438 0.90184 0.89844 0.92819 0.87885 0.89676 0.89074 0.87494 0.87647 0.91992 0.91872 0.90103 0.92990 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 8.89 71.98 0.64 -1.95 16 2 C 0.07 1.13 2.30 44.91 0.10 1.24 16 3 C -0.14 -1.82 9.12 71.98 0.66 -1.16 16 4 N -0.54 -9.97 5.03 -860.35 -4.33 -14.29 16 5 C 0.04 0.58 5.44 86.77 0.47 1.06 16 6 C -0.11 -1.42 5.70 32.08 0.18 -1.24 16 7 C -0.09 -1.36 2.48 -9.51 -0.02 -1.38 16 8 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 9 C -0.08 -1.41 1.73 -10.72 -0.02 -1.43 16 10 H 0.06 1.28 8.12 -2.39 -0.02 1.26 16 11 C -0.11 -1.32 5.03 30.62 0.15 -1.16 16 12 C -0.13 -1.90 6.08 30.67 0.19 -1.72 16 13 C 0.10 1.86 6.34 86.36 0.55 2.41 16 14 N -0.61 -17.02 2.97 -818.89 -2.43 -19.45 16 15 C 0.53 21.00 7.72 87.66 0.68 21.67 16 16 O -0.57 -27.88 15.27 -3.02 -0.05 -27.93 16 17 C -0.12 -5.03 4.50 71.24 0.32 -4.71 16 18 S -0.15 -8.82 20.57 -56.49 -1.16 -9.98 16 19 C -0.54 -31.50 9.50 67.95 0.65 -30.85 16 20 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 21 C 0.01 0.68 5.49 84.86 0.47 1.15 16 22 N -0.91 -56.75 13.22 21.65 0.29 -56.46 16 23 Si 1.00 43.89 29.55 68.60 2.03 45.92 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 25 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 27 C 0.12 2.77 5.37 86.36 0.46 3.23 16 28 C 0.04 0.89 4.89 86.65 0.42 1.31 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.05 0.90 6.57 -2.38 -0.02 0.89 16 32 H 0.04 0.65 8.05 -2.38 -0.02 0.63 16 33 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 0.70 7.18 -2.39 -0.02 0.68 16 36 H 0.05 0.64 7.66 -2.38 -0.02 0.62 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.10 0.78 8.11 -2.39 -0.02 0.76 16 39 H 0.07 1.00 8.04 -2.39 -0.02 0.98 16 40 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.08 0.81 7.44 -2.39 -0.02 0.80 16 42 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 43 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.08 1.73 5.93 -2.39 -0.01 1.72 16 45 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.11 4.00 7.94 -2.40 -0.02 3.98 16 47 H 0.11 3.98 7.69 -2.40 -0.02 3.96 16 48 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 49 H 0.06 1.94 6.13 -2.38 -0.01 1.93 16 50 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 51 H 0.05 1.34 7.48 -2.39 -0.02 1.33 16 52 H 0.05 1.10 6.19 -2.39 -0.01 1.08 16 Total: -1.00 -77.08 406.75 1.11 -75.97 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.87 Total: 19.76 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: 5.90 Total: -13.53 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -6.47 Total: -90.21 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.05 Total: -27.93 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: -8.82 SS G_CDS: -1.16 Total: -9.98 kcal Total: -77.08 1.11 -75.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505469878.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.969 kcal (2) G-P(sol) polarization free energy of solvation -77.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds