Wall clock time and date at job start Sat Apr 11 2020 06:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46909 * 2 1 4 4 H 1.09004 * 109.46655 * 303.89923 * 3 2 1 5 5 S 1.81407 * 109.47167 * 183.90292 * 3 2 1 6 6 C 1.81400 * 102.99972 * 69.44177 * 5 3 2 7 7 C 1.50694 * 109.47074 * 63.90263 * 3 2 1 8 8 O 1.21285 * 120.00273 * 33.75105 * 7 3 2 9 9 N 1.34780 * 119.99941 * 213.75419 * 7 3 2 10 10 C 1.46921 * 120.63204 * 174.97996 * 9 7 3 11 11 C 1.53192 * 108.77768 * 126.41245 * 10 9 7 12 12 C 1.53035 * 109.31081 * 54.63462 * 11 10 9 13 13 N 1.46505 * 109.46125 * 178.62974 * 12 11 10 14 14 C 1.36932 * 119.99802 * 60.03073 * 13 12 11 15 15 H 1.08002 * 120.00501 * 20.48639 * 14 13 12 16 16 C 1.38819 * 119.99955 * 200.48737 * 14 13 12 17 17 N 1.31620 * 119.99559 * 4.12753 * 16 14 13 18 18 Si 1.86796 * 119.99973 * 184.12109 * 16 14 13 19 19 H 1.48505 * 109.47490 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47008 * 120.00304 * 18 16 14 21 21 H 1.48501 * 109.47165 * 240.00223 * 18 16 14 22 22 C 1.46501 * 120.00090 * 240.02725 * 13 12 11 23 23 C 1.52998 * 109.46968 * 85.55524 * 22 13 12 24 24 C 1.53007 * 117.49846 * 243.62564 * 23 22 13 25 25 C 1.52998 * 117.49997 * 175.00142 * 23 22 13 26 26 C 1.53044 * 109.52933 * 298.64311 * 12 11 10 27 27 C 1.46925 * 120.63141 * 355.00259 * 9 7 3 28 28 H 1.08994 * 109.47418 * 64.95269 * 1 2 3 29 29 H 1.09004 * 109.46572 * 184.95200 * 1 2 3 30 30 H 1.09001 * 109.46918 * 304.94676 * 1 2 3 31 31 H 1.09007 * 109.47244 * 240.00413 * 2 1 3 32 32 H 1.08996 * 109.47818 * 120.00012 * 2 1 3 33 33 H 1.08998 * 109.47201 * 64.96341 * 6 5 3 34 34 H 1.08999 * 109.47127 * 184.96174 * 6 5 3 35 35 H 1.08996 * 109.47344 * 304.96316 * 6 5 3 36 36 H 1.09006 * 109.58850 * 6.62623 * 10 9 7 37 37 H 1.09000 * 109.59167 * 246.20468 * 10 9 7 38 38 H 1.09000 * 109.49779 * 294.68609 * 11 10 9 39 39 H 1.08993 * 109.50035 * 174.58832 * 11 10 9 40 40 H 1.09004 * 109.46040 * 58.65696 * 12 11 10 41 41 H 0.97005 * 119.99838 * 179.97438 * 17 16 14 42 42 H 1.08998 * 109.46982 * 205.54963 * 22 13 12 43 43 H 1.08999 * 109.47079 * 325.55643 * 22 13 12 44 44 H 1.09004 * 115.55052 * 29.32738 * 23 22 13 45 45 H 1.08994 * 117.49697 * 359.97438 * 24 23 22 46 46 H 1.08995 * 117.49763 * 145.01891 * 24 23 22 47 47 H 1.09005 * 117.49614 * 214.97625 * 25 23 22 48 48 H 1.09000 * 117.49934 * 359.97438 * 25 23 22 49 49 H 1.09001 * 109.50109 * 181.30871 * 26 12 11 50 50 H 1.08997 * 109.49851 * 301.40477 * 26 12 11 51 51 H 1.09001 * 109.58404 * 353.37735 * 27 9 7 52 52 H 1.09002 * 109.58890 * 113.79651 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6206 1.9761 -0.8530 5 16 3.8503 1.4440 -0.1164 6 6 4.1509 0.8613 -1.8078 7 6 1.6181 2.1245 1.2759 8 8 1.5473 1.4906 2.3075 9 7 1.3195 3.4387 1.2707 10 6 0.8019 4.0936 2.4798 11 6 1.6770 5.3111 2.7941 12 6 1.7397 6.2203 1.5647 13 7 2.5491 7.4020 1.8723 14 6 3.8593 7.2569 2.2431 15 1 4.3920 6.3494 2.0000 16 6 4.5028 8.2762 2.9315 17 7 3.8323 9.3475 3.2990 18 14 6.3203 8.1273 3.3362 19 1 6.8392 6.8366 2.8165 20 1 7.0615 9.2486 2.7048 21 1 6.5053 8.1787 4.8088 22 6 1.9569 8.7390 1.7832 23 6 1.2536 9.0741 3.1000 24 6 -0.2619 9.2809 3.0588 25 6 0.6690 10.4799 3.2509 26 6 2.3719 5.4591 0.3972 27 6 1.5048 4.2437 0.0556 28 1 -0.3634 0.4350 -0.9310 29 1 -0.3632 -1.0239 0.0887 30 1 -0.3633 0.5887 0.8424 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 3.7619 1.5910 -2.5180 34 1 5.2224 0.7374 -1.9644 35 1 3.6489 -0.0946 -1.9574 36 1 0.8339 3.3950 3.3159 37 1 -0.2253 4.4161 2.3096 38 1 2.6826 4.9793 3.0528 39 1 1.2481 5.8609 3.6317 40 1 0.7314 6.5318 1.2916 41 1 4.2818 10.0597 3.7803 42 1 2.7411 9.4719 1.5935 43 1 1.2330 8.7622 0.9686 44 1 1.6739 8.6055 3.9899 45 1 -0.7577 9.1787 2.0936 46 1 -0.8388 8.9483 3.9217 47 1 0.7044 10.9361 4.2403 48 1 0.7858 11.1663 2.4123 49 1 2.4376 6.1144 -0.4714 50 1 3.3709 5.1260 0.6784 51 1 2.0004 3.6441 -0.7078 52 1 0.5349 4.5784 -0.3124 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569451720.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:15 Heat of formation + Delta-G solvation = 2.242664 kcal Electronic energy + Delta-G solvation = -29283.617631 eV Core-core repulsion = 25603.505492 eV Total energy + Delta-G solvation = -3680.112138 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.37003 -39.28000 -37.93141 -36.10130 -35.57265 -33.79815 -32.14756 -31.42300 -29.77766 -28.91261 -27.91429 -26.31167 -24.35363 -23.88931 -22.96214 -22.86031 -21.37386 -20.97868 -20.01905 -18.83209 -18.06428 -17.67126 -17.12912 -16.82738 -16.26465 -16.11332 -15.50196 -15.33788 -15.20230 -15.08346 -15.04671 -14.66151 -14.58837 -14.30075 -14.21780 -13.74113 -13.64380 -13.44315 -13.24293 -13.17170 -12.95049 -12.77365 -12.69863 -12.49112 -12.37211 -12.32017 -12.19257 -12.07673 -11.97601 -11.86200 -11.76863 -11.46548 -11.25179 -10.97668 -10.92876 -10.75526 -10.46345 -10.04683 -9.65011 -8.78972 -8.57738 -7.65777 -5.12322 0.25100 1.43724 1.48773 1.52863 1.54664 1.87498 1.95852 2.55540 3.30299 3.37114 3.45312 3.57571 3.66883 3.82864 4.05420 4.13954 4.23826 4.28226 4.32003 4.36620 4.39098 4.41076 4.45200 4.46364 4.50403 4.59676 4.69040 4.72751 4.80961 4.83146 4.88539 4.90035 4.91358 4.97156 5.03101 5.09754 5.17442 5.18446 5.20776 5.30522 5.44420 5.46867 5.58775 5.60441 5.67338 5.76504 5.93789 6.03487 6.36220 6.51155 7.06517 7.33435 8.05361 8.44182 9.31243 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012790 B = 0.003575 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.709495 B = 7831.013224 C = 9164.478638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.102 4.102 3 C -0.071 4.071 4 H 0.134 0.866 5 S -0.290 6.290 6 C -0.109 4.109 7 C 0.533 3.467 8 O -0.574 6.574 9 N -0.599 5.599 10 C 0.122 3.878 11 C -0.123 4.123 12 C 0.179 3.821 13 N -0.602 5.602 14 C -0.234 4.234 15 H 0.058 0.942 16 C -0.045 4.045 17 N -0.912 5.912 18 Si 0.944 3.056 19 H -0.281 1.281 20 H -0.293 1.293 21 H -0.302 1.302 22 C 0.214 3.786 23 C -0.092 4.092 24 C -0.196 4.196 25 C -0.180 4.180 26 C -0.130 4.130 27 C 0.113 3.887 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.034 0.966 31 H 0.097 0.903 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.029 0.971 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.240 0.760 42 H 0.057 0.943 43 H 0.023 0.977 44 H 0.061 0.939 45 H 0.096 0.904 46 H 0.083 0.917 47 H 0.072 0.928 48 H 0.083 0.917 49 H 0.077 0.923 50 H 0.039 0.961 51 H 0.098 0.902 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.190 -13.890 -13.834 21.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.141 4.141 3 C -0.202 4.202 4 H 0.152 0.848 5 S -0.064 6.064 6 C -0.277 4.277 7 C 0.320 3.680 8 O -0.454 6.454 9 N -0.331 5.331 10 C -0.001 4.001 11 C -0.164 4.164 12 C 0.072 3.928 13 N -0.322 5.322 14 C -0.364 4.364 15 H 0.076 0.924 16 C -0.240 4.240 17 N -0.559 5.559 18 Si 0.776 3.224 19 H -0.206 1.206 20 H -0.220 1.220 21 H -0.230 1.230 22 C 0.089 3.911 23 C -0.112 4.112 24 C -0.233 4.233 25 C -0.218 4.218 26 C -0.170 4.170 27 C -0.009 4.009 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.054 0.946 31 H 0.115 0.885 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.130 0.870 35 H 0.116 0.884 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.048 0.952 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.050 0.950 42 H 0.075 0.925 43 H 0.041 0.959 44 H 0.079 0.921 45 H 0.114 0.886 46 H 0.101 0.899 47 H 0.090 0.910 48 H 0.102 0.898 49 H 0.096 0.904 50 H 0.058 0.942 51 H 0.116 0.884 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.361 -13.761 -12.486 20.376 hybrid contribution 0.805 0.178 0.376 0.906 sum -7.556 -13.583 -12.110 19.705 Atomic orbital electron populations 1.21793 0.94067 1.02833 1.01962 1.21688 0.97180 0.91587 1.03671 1.23455 0.95388 1.01824 0.99549 0.84828 1.87806 1.05905 1.88962 1.23683 1.23566 1.07152 1.05043 0.91930 1.20115 0.76271 0.81928 0.89720 1.90660 1.54733 1.65403 1.34566 1.48176 1.63440 1.07783 1.13677 1.21588 0.97610 0.93706 0.87226 1.22161 0.98436 0.95791 0.99986 1.20415 0.93874 0.86306 0.92177 1.44257 1.07976 1.01053 1.78910 1.19202 0.88031 1.01406 1.27789 0.92420 1.25414 1.00263 0.98373 0.99973 1.70293 1.33791 1.08485 1.43378 0.85538 0.83281 0.76898 0.76697 1.20601 1.22012 1.22964 1.20188 0.93838 0.86336 0.90740 1.22540 0.90775 0.97187 1.00746 1.23146 0.94301 1.03662 1.02184 1.22602 1.06029 0.92165 1.01016 1.22203 0.98888 0.96397 0.99538 1.21988 1.01272 0.91985 0.85632 0.90606 0.90973 0.94645 0.88472 0.92164 0.88594 0.87014 0.88382 0.91232 0.89037 0.95181 0.92666 0.91039 0.94967 0.92474 0.95877 0.92068 0.88555 0.89885 0.90953 0.89825 0.90434 0.94201 0.88394 0.88381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.78 71.98 0.70 -1.67 16 2 C -0.10 -1.86 5.11 30.60 0.16 -1.70 16 3 C -0.07 -1.52 1.80 29.85 0.05 -1.47 16 4 H 0.13 2.06 6.23 -2.39 -0.01 2.04 16 5 S -0.29 -6.97 21.67 -56.49 -1.22 -8.20 16 6 C -0.11 -1.35 10.61 113.37 1.20 -0.15 16 7 C 0.53 15.76 5.67 87.65 0.50 16.26 16 8 O -0.57 -21.51 15.28 -3.04 -0.05 -21.56 16 9 N -0.60 -16.75 2.97 -818.97 -2.43 -19.18 16 10 C 0.12 3.70 6.44 86.36 0.56 4.25 16 11 C -0.12 -4.61 5.31 30.67 0.16 -4.45 16 12 C 0.18 6.49 2.60 45.02 0.12 6.61 16 13 N -0.60 -27.42 2.47 -677.87 -1.67 -29.09 16 14 C -0.23 -12.19 8.49 84.04 0.71 -11.47 16 15 H 0.06 3.11 6.80 -2.91 -0.02 3.09 16 16 C -0.05 -2.44 5.25 84.86 0.45 -1.99 16 17 N -0.91 -50.25 8.36 21.65 0.18 -50.07 16 18 Si 0.94 45.70 29.56 68.60 2.03 47.73 16 19 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 20 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 21 H -0.30 -14.97 7.11 99.48 0.71 -14.27 16 22 C 0.21 9.59 5.10 86.38 0.44 10.03 16 23 C -0.09 -3.95 4.33 -10.79 -0.05 -4.00 16 24 C -0.20 -6.67 10.18 30.60 0.31 -6.35 16 25 C -0.18 -6.81 10.25 30.60 0.31 -6.49 16 26 C -0.13 -4.07 5.30 30.66 0.16 -3.91 16 27 C 0.11 2.58 6.15 86.35 0.53 3.11 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.03 0.75 6.97 -2.39 -0.02 0.73 16 31 H 0.10 1.20 6.94 -2.38 -0.02 1.19 16 32 H 0.06 1.44 7.72 -2.39 -0.02 1.42 16 33 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.10 0.86 7.06 -2.39 -0.02 0.84 16 36 H 0.07 2.35 7.00 -2.38 -0.02 2.33 16 37 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.03 1.33 7.71 -2.39 -0.02 1.31 16 39 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.07 2.33 7.85 -2.39 -0.02 2.31 16 41 H 0.24 13.28 8.31 -92.70 -0.77 12.51 16 42 H 0.06 2.97 6.18 -2.39 -0.01 2.96 16 43 H 0.02 0.92 7.75 -2.39 -0.02 0.90 16 44 H 0.06 3.18 7.56 -2.38 -0.02 3.16 16 45 H 0.10 2.90 8.03 -2.39 -0.02 2.88 16 46 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 47 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 48 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 49 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 50 H 0.04 1.51 7.04 -2.39 -0.02 1.50 16 51 H 0.10 1.84 5.56 -2.39 -0.01 1.82 16 52 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -66.48 408.27 4.03 -62.45 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.88 Total: 21.31 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: 6.32 Total: -3.39 kcal Atomic # 7 Polarization: -94.42 SS G_CDS: -3.93 Total: -98.34 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.05 Total: -21.56 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Atomic # 16 Polarization: -6.97 SS G_CDS: -1.22 Total: -8.20 kcal Total: -66.48 4.03 -62.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569451720.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.693 kcal (2) G-P(sol) polarization free energy of solvation -66.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds