Wall clock time and date at job start Sat Apr 11 2020 06:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47040 * 2 1 4 4 H 1.08999 * 109.46953 * 305.00002 * 3 2 1 5 5 S 1.81400 * 109.46878 * 65.00212 * 3 2 1 6 6 C 1.81401 * 102.99777 * 185.00040 * 5 3 2 7 7 C 1.50700 * 109.47169 * 184.99890 * 3 2 1 8 8 O 1.21281 * 119.99788 * 328.81170 * 7 3 2 9 9 N 1.34774 * 120.00186 * 148.80739 * 7 3 2 10 10 C 1.46919 * 120.63315 * 175.38036 * 9 7 3 11 11 C 1.53192 * 108.77654 * 126.37306 * 10 9 7 12 12 C 1.53032 * 109.31470 * 54.63115 * 11 10 9 13 13 N 1.46509 * 109.46197 * 178.62771 * 12 11 10 14 14 C 1.36940 * 119.99444 * 60.02682 * 13 12 11 15 15 H 1.07998 * 119.99865 * 15.25980 * 14 13 12 16 16 C 1.38813 * 119.99582 * 195.25329 * 14 13 12 17 17 N 1.31618 * 120.00193 * 25.48035 * 16 14 13 18 18 Si 1.86804 * 119.99598 * 205.48277 * 16 14 13 19 19 H 1.48499 * 109.46787 * 94.99526 * 18 16 14 20 20 H 1.48504 * 109.46700 * 214.99041 * 18 16 14 21 21 H 1.48493 * 109.47158 * 334.99312 * 18 16 14 22 22 C 1.46497 * 120.00063 * 240.03142 * 13 12 11 23 23 C 1.53001 * 109.47107 * 84.28956 * 22 13 12 24 24 C 1.52997 * 117.49535 * 243.61725 * 23 22 13 25 25 C 1.52994 * 60.00113 * 252.51077 * 24 23 22 26 26 C 1.53042 * 109.54259 * 298.63735 * 12 11 10 27 27 C 1.46930 * 120.62827 * 355.35821 * 9 7 3 28 28 H 1.09001 * 109.46982 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.46985 * 299.99805 * 1 2 3 30 30 H 1.08996 * 109.47029 * 59.99717 * 1 2 3 31 31 H 1.08999 * 109.47330 * 240.00419 * 2 1 3 32 32 H 1.09003 * 109.47726 * 119.99809 * 2 1 3 33 33 H 1.09003 * 109.46740 * 179.97438 * 6 5 3 34 34 H 1.09006 * 109.46829 * 299.99694 * 6 5 3 35 35 H 1.08995 * 109.47227 * 59.99936 * 6 5 3 36 36 H 1.08996 * 109.58719 * 6.58172 * 10 9 7 37 37 H 1.09000 * 109.70481 * 246.22893 * 10 9 7 38 38 H 1.09003 * 109.49534 * 294.68076 * 11 10 9 39 39 H 1.09008 * 109.49707 * 174.58808 * 11 10 9 40 40 H 1.09006 * 109.46108 * 58.66127 * 12 11 10 41 41 H 0.97000 * 120.00132 * 179.97438 * 17 16 14 42 42 H 1.09003 * 109.46865 * 204.28746 * 22 13 12 43 43 H 1.08996 * 109.47432 * 324.28500 * 22 13 12 44 44 H 1.09002 * 115.55238 * 29.32812 * 23 22 13 45 45 H 1.08997 * 117.50376 * 0.02562 * 24 23 22 46 46 H 1.09001 * 117.49797 * 145.02111 * 24 23 22 47 47 H 1.09005 * 117.50232 * 252.51064 * 25 24 23 48 48 H 1.09007 * 117.49482 * 107.49244 * 25 24 23 49 49 H 1.08996 * 109.50008 * 181.31577 * 26 12 11 50 50 H 1.08997 * 109.49204 * 301.41429 * 26 12 11 51 51 H 1.09001 * 109.58875 * 353.41505 * 27 9 7 52 52 H 1.08999 * 109.58725 * 113.84326 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 16 1.5601 2.2535 1.5501 6 6 2.1077 3.9649 1.3017 7 6 3.5419 1.4444 -0.1238 8 8 4.1899 0.5312 0.3421 9 7 4.1651 2.4608 -0.7524 10 6 5.6321 2.5286 -0.7934 11 6 6.0787 2.6672 -2.2522 12 6 5.3759 3.8706 -2.8846 13 7 5.8255 4.0258 -4.2703 14 6 5.6257 3.0148 -5.1721 15 1 4.9329 2.2180 -4.9453 16 6 6.3136 3.0144 -6.3778 17 7 7.4704 3.6346 -6.4758 18 14 5.5974 2.1336 -7.8614 19 1 4.8453 3.1035 -8.6973 20 1 6.6974 1.5385 -8.6622 21 1 4.6806 1.0588 -7.4039 22 6 6.4888 5.2623 -4.6910 23 6 7.9792 5.1815 -4.3547 24 6 8.5295 6.1845 -3.3388 25 6 8.8724 6.3322 -4.8225 26 6 3.8617 3.6492 -2.8619 27 6 3.3901 3.5218 -1.4100 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8935 -0.5138 0.8900 33 1 1.8663 4.5555 2.1855 34 1 3.1850 3.9813 1.1364 35 1 1.6005 4.3864 0.4339 36 1 6.0521 1.6174 -0.3677 37 1 5.9763 3.3910 -0.2225 38 1 5.8156 1.7627 -2.8007 39 1 7.1580 2.8151 -2.2898 40 1 5.6197 4.7711 -2.3208 41 1 7.9512 3.6340 -7.3182 42 1 6.3656 5.3931 -5.7661 43 1 6.0439 6.1092 -4.1687 44 1 8.4078 4.1792 -4.3558 45 1 7.8298 6.9016 -2.9097 46 1 9.3202 5.8421 -2.6712 47 1 9.8887 6.0871 -5.1311 48 1 8.3983 7.1470 -5.3699 49 1 3.3631 4.4960 -3.3335 50 1 3.6196 2.7355 -3.4046 51 1 2.3307 3.2658 -1.3911 52 1 3.5492 4.4664 -0.8899 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569451721.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:06 Heat of formation + Delta-G solvation = 14.204568 kcal Electronic energy + Delta-G solvation = -29390.283833 eV Core-core repulsion = 25710.690402 eV Total energy + Delta-G solvation = -3679.593431 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.21516 -37.83250 -36.51549 -34.70132 -34.60302 -32.23792 -31.10342 -29.97313 -29.07932 -27.98867 -26.16102 -24.87678 -23.01084 -22.46717 -21.72904 -21.52990 -20.13770 -19.44058 -18.85676 -17.46823 -16.86683 -16.32510 -15.93310 -15.40704 -15.30504 -14.64715 -14.42413 -14.13548 -14.00333 -13.75063 -13.66461 -13.59309 -13.44390 -13.23898 -13.06548 -12.83125 -12.42937 -12.27071 -11.98535 -11.93157 -11.60368 -11.39544 -11.33991 -11.17413 -10.94347 -10.86017 -10.80354 -10.69923 -10.67201 -10.36496 -10.26577 -10.03113 -9.96552 -9.76181 -9.69345 -9.20024 -8.80307 -8.49893 -8.38139 -7.87067 -6.89857 -5.80944 -3.14293 1.22268 2.11260 2.87812 3.08627 3.36023 3.44854 3.45761 4.28455 4.43727 4.46588 4.65630 4.87672 4.90774 4.94945 5.04166 5.09026 5.18778 5.24794 5.29642 5.35238 5.43755 5.47781 5.56341 5.61583 5.71489 5.75905 5.83075 5.87420 5.93464 5.94057 5.96251 6.05379 6.13785 6.17082 6.28366 6.31138 6.39242 6.52199 6.54486 6.63481 6.68318 6.86369 6.95865 7.02968 7.22349 7.41975 7.44408 7.70543 7.82334 8.18062 8.31197 9.17717 9.82612 10.29037 11.23903 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013270 B = 0.003434 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.459538 B = 8151.369452 C = 9397.068000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.092 4.092 3 C -0.084 4.084 4 H 0.110 0.890 5 S -0.212 6.212 6 C -0.137 4.137 7 C 0.519 3.481 8 O -0.531 6.531 9 N -0.602 5.602 10 C 0.113 3.887 11 C -0.136 4.136 12 C 0.183 3.817 13 N -0.587 5.587 14 C -0.254 4.254 15 H 0.070 0.930 16 C 0.006 3.994 17 N -0.886 5.886 18 Si 0.888 3.112 19 H -0.290 1.290 20 H -0.294 1.294 21 H -0.282 1.282 22 C 0.206 3.794 23 C -0.083 4.083 24 C -0.223 4.223 25 C -0.184 4.184 26 C -0.142 4.142 27 C 0.101 3.899 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.052 0.948 41 H 0.252 0.748 42 H 0.077 0.923 43 H 0.010 0.990 44 H 0.113 0.887 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.076 0.924 49 H 0.071 0.929 50 H 0.070 0.930 51 H 0.074 0.926 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.175 2.371 12.441 16.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.131 4.131 3 C -0.215 4.215 4 H 0.128 0.872 5 S 0.014 5.986 6 C -0.306 4.306 7 C 0.303 3.697 8 O -0.408 6.408 9 N -0.336 5.336 10 C -0.010 4.010 11 C -0.176 4.176 12 C 0.074 3.926 13 N -0.306 5.306 14 C -0.383 4.383 15 H 0.088 0.912 16 C -0.193 4.193 17 N -0.530 5.530 18 Si 0.718 3.282 19 H -0.217 1.217 20 H -0.221 1.221 21 H -0.207 1.207 22 C 0.081 3.919 23 C -0.104 4.104 24 C -0.261 4.261 25 C -0.222 4.222 26 C -0.183 4.183 27 C -0.022 4.022 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.121 0.879 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.095 0.905 43 H 0.028 0.972 44 H 0.131 0.869 45 H 0.093 0.907 46 H 0.091 0.909 47 H 0.094 0.906 48 H 0.094 0.906 49 H 0.090 0.910 50 H 0.089 0.911 51 H 0.092 0.908 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.228 1.485 13.411 16.931 hybrid contribution 0.546 0.277 -2.103 2.191 sum -9.682 1.761 11.307 14.990 Atomic orbital electron populations 1.21847 0.94506 1.02113 1.02623 1.21200 0.96314 0.91350 1.04211 1.23565 0.95914 1.02620 0.99427 0.87217 1.86864 1.78912 1.08067 1.24776 1.23702 1.05013 0.95550 1.06298 1.20260 0.89197 0.81984 0.78220 1.90677 1.66732 1.34964 1.48384 1.48157 1.07681 1.24337 1.53452 1.21743 0.78208 1.02303 0.98717 1.22368 1.01075 1.01455 0.92719 1.20165 0.90813 0.95015 0.86578 1.44173 1.67458 1.14807 1.04201 1.19052 1.19158 1.04142 0.95972 0.91176 1.24728 0.95482 0.99895 0.99183 1.70213 1.11238 1.46863 1.24655 0.86490 0.78550 0.79064 0.84063 1.21731 1.22096 1.20724 1.20227 0.87579 0.84892 0.99241 1.23051 0.97166 0.94203 0.95943 1.23090 1.04250 1.06372 0.92349 1.22608 1.00740 1.03249 0.95616 1.22408 0.99737 1.03048 0.93060 1.22080 0.95015 0.90173 0.94971 0.92171 0.91506 0.92500 0.90223 0.90001 0.87911 0.89870 0.89978 0.89618 0.92027 0.91273 0.90963 0.92956 0.93811 0.90531 0.97180 0.86942 0.90656 0.90853 0.90612 0.90556 0.91035 0.91148 0.90788 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.74 37.16 0.36 -1.00 16 2 C -0.09 -1.03 4.93 -26.73 -0.13 -1.16 16 3 C -0.08 -0.98 2.10 -27.88 -0.06 -1.04 16 4 H 0.11 1.13 5.72 -51.92 -0.30 0.84 16 5 S -0.21 -2.31 20.59 -107.50 -2.21 -4.52 16 6 C -0.14 -1.17 8.89 101.05 0.90 -0.27 16 7 C 0.52 7.65 6.39 -10.99 -0.07 7.58 16 8 O -0.53 -9.67 15.71 5.56 0.09 -9.58 16 9 N -0.60 -8.34 2.59 -172.77 -0.45 -8.79 16 10 C 0.11 1.68 6.44 -3.71 -0.02 1.66 16 11 C -0.14 -2.39 5.31 -26.62 -0.14 -2.53 16 12 C 0.18 3.22 2.59 -67.89 -0.18 3.05 16 13 N -0.59 -12.75 2.47 -165.61 -0.41 -13.16 16 14 C -0.25 -6.25 8.39 -15.06 -0.13 -6.37 16 15 H 0.07 1.75 6.93 -52.49 -0.36 1.39 16 16 C 0.01 0.15 4.77 -17.43 -0.08 0.07 16 17 N -0.89 -23.28 9.25 55.49 0.51 -22.76 16 18 Si 0.89 20.78 29.62 -169.99 -5.04 15.74 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C 0.21 4.46 5.09 -4.04 -0.02 4.44 16 23 C -0.08 -1.73 4.48 -90.62 -0.41 -2.14 16 24 C -0.22 -3.92 10.18 -26.74 -0.27 -4.20 16 25 C -0.18 -3.45 10.25 -26.73 -0.27 -3.73 16 26 C -0.14 -2.17 5.31 -26.61 -0.14 -2.31 16 27 C 0.10 1.19 4.25 -3.71 -0.02 1.18 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.60 7.13 -51.93 -0.37 0.23 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 1.02 8.02 -51.93 -0.42 0.60 16 33 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 34 H 0.08 0.79 6.46 -51.92 -0.34 0.46 16 35 H 0.08 0.59 7.44 -51.93 -0.39 0.21 16 36 H 0.09 1.38 7.00 -51.93 -0.36 1.02 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 1.40 7.66 -51.93 -0.40 1.00 16 39 H 0.07 1.36 8.14 -51.92 -0.42 0.93 16 40 H 0.05 0.89 7.87 -51.93 -0.41 0.48 16 41 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 42 H 0.08 1.88 6.41 -51.93 -0.33 1.55 16 43 H 0.01 0.20 7.78 -51.93 -0.40 -0.20 16 44 H 0.11 2.76 7.43 -51.93 -0.39 2.37 16 45 H 0.07 1.23 8.03 -51.93 -0.42 0.82 16 46 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 48 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 49 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 50 H 0.07 1.22 7.09 -51.93 -0.37 0.86 16 51 H 0.07 0.75 4.81 -51.93 -0.25 0.50 16 52 H 0.07 0.70 7.17 -51.93 -0.37 0.32 16 LS Contribution 403.33 15.07 6.08 6.08 Total: -1.00 -27.43 403.33 -11.34 -38.77 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -9.23 Total: 5.01 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -0.68 Total: -6.78 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: -0.34 Total: -44.71 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.04 Total: 15.74 kcal Atomic # 16 Polarization: -2.31 SS G_CDS: -2.21 Total: -4.52 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -27.43 -11.34 -38.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569451721.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.973 kcal (2) G-P(sol) polarization free energy of solvation -27.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds