Wall clock time and date at job start Sat Apr 11 2020 06:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47040 * 2 1 4 4 H 1.08999 * 109.46953 * 305.00002 * 3 2 1 5 5 S 1.81400 * 109.46878 * 65.00212 * 3 2 1 6 6 C 1.81401 * 102.99777 * 185.00040 * 5 3 2 7 7 C 1.50700 * 109.47169 * 184.99890 * 3 2 1 8 8 O 1.21281 * 119.99788 * 328.81170 * 7 3 2 9 9 N 1.34774 * 120.00186 * 148.80739 * 7 3 2 10 10 C 1.46919 * 120.63315 * 175.38036 * 9 7 3 11 11 C 1.53192 * 108.77654 * 126.37306 * 10 9 7 12 12 C 1.53032 * 109.31470 * 54.63115 * 11 10 9 13 13 N 1.46509 * 109.46197 * 178.62771 * 12 11 10 14 14 C 1.36940 * 119.99444 * 60.02682 * 13 12 11 15 15 H 1.07998 * 119.99865 * 15.25980 * 14 13 12 16 16 C 1.38813 * 119.99582 * 195.25329 * 14 13 12 17 17 N 1.31618 * 120.00193 * 25.48035 * 16 14 13 18 18 Si 1.86804 * 119.99598 * 205.48277 * 16 14 13 19 19 H 1.48499 * 109.46787 * 94.99526 * 18 16 14 20 20 H 1.48504 * 109.46700 * 214.99041 * 18 16 14 21 21 H 1.48493 * 109.47158 * 334.99312 * 18 16 14 22 22 C 1.46497 * 120.00063 * 240.03142 * 13 12 11 23 23 C 1.53001 * 109.47107 * 84.28956 * 22 13 12 24 24 C 1.52997 * 117.49535 * 243.61725 * 23 22 13 25 25 C 1.52994 * 60.00113 * 252.51077 * 24 23 22 26 26 C 1.53042 * 109.54259 * 298.63735 * 12 11 10 27 27 C 1.46930 * 120.62827 * 355.35821 * 9 7 3 28 28 H 1.09001 * 109.46982 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.46985 * 299.99805 * 1 2 3 30 30 H 1.08996 * 109.47029 * 59.99717 * 1 2 3 31 31 H 1.08999 * 109.47330 * 240.00419 * 2 1 3 32 32 H 1.09003 * 109.47726 * 119.99809 * 2 1 3 33 33 H 1.09003 * 109.46740 * 179.97438 * 6 5 3 34 34 H 1.09006 * 109.46829 * 299.99694 * 6 5 3 35 35 H 1.08995 * 109.47227 * 59.99936 * 6 5 3 36 36 H 1.08996 * 109.58719 * 6.58172 * 10 9 7 37 37 H 1.09000 * 109.70481 * 246.22893 * 10 9 7 38 38 H 1.09003 * 109.49534 * 294.68076 * 11 10 9 39 39 H 1.09008 * 109.49707 * 174.58808 * 11 10 9 40 40 H 1.09006 * 109.46108 * 58.66127 * 12 11 10 41 41 H 0.97000 * 120.00132 * 179.97438 * 17 16 14 42 42 H 1.09003 * 109.46865 * 204.28746 * 22 13 12 43 43 H 1.08996 * 109.47432 * 324.28500 * 22 13 12 44 44 H 1.09002 * 115.55238 * 29.32812 * 23 22 13 45 45 H 1.08997 * 117.50376 * 0.02562 * 24 23 22 46 46 H 1.09001 * 117.49797 * 145.02111 * 24 23 22 47 47 H 1.09005 * 117.50232 * 252.51064 * 25 24 23 48 48 H 1.09007 * 117.49482 * 107.49244 * 25 24 23 49 49 H 1.08996 * 109.50008 * 181.31577 * 26 12 11 50 50 H 1.08997 * 109.49204 * 301.41429 * 26 12 11 51 51 H 1.09001 * 109.58875 * 353.41505 * 27 9 7 52 52 H 1.08999 * 109.58725 * 113.84326 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 16 1.5601 2.2535 1.5501 6 6 2.1077 3.9649 1.3017 7 6 3.5419 1.4444 -0.1238 8 8 4.1899 0.5312 0.3421 9 7 4.1651 2.4608 -0.7524 10 6 5.6321 2.5286 -0.7934 11 6 6.0787 2.6672 -2.2522 12 6 5.3759 3.8706 -2.8846 13 7 5.8255 4.0258 -4.2703 14 6 5.6257 3.0148 -5.1721 15 1 4.9329 2.2180 -4.9453 16 6 6.3136 3.0144 -6.3778 17 7 7.4704 3.6346 -6.4758 18 14 5.5974 2.1336 -7.8614 19 1 4.8453 3.1035 -8.6973 20 1 6.6974 1.5385 -8.6622 21 1 4.6806 1.0588 -7.4039 22 6 6.4888 5.2623 -4.6910 23 6 7.9792 5.1815 -4.3547 24 6 8.5295 6.1845 -3.3388 25 6 8.8724 6.3322 -4.8225 26 6 3.8617 3.6492 -2.8619 27 6 3.3901 3.5218 -1.4100 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8935 -0.5138 0.8900 33 1 1.8663 4.5555 2.1855 34 1 3.1850 3.9813 1.1364 35 1 1.6005 4.3864 0.4339 36 1 6.0521 1.6174 -0.3677 37 1 5.9763 3.3910 -0.2225 38 1 5.8156 1.7627 -2.8007 39 1 7.1580 2.8151 -2.2898 40 1 5.6197 4.7711 -2.3208 41 1 7.9512 3.6340 -7.3182 42 1 6.3656 5.3931 -5.7661 43 1 6.0439 6.1092 -4.1687 44 1 8.4078 4.1792 -4.3558 45 1 7.8298 6.9016 -2.9097 46 1 9.3202 5.8421 -2.6712 47 1 9.8887 6.0871 -5.1311 48 1 8.3983 7.1470 -5.3699 49 1 3.3631 4.4960 -3.3335 50 1 3.6196 2.7355 -3.4046 51 1 2.3307 3.2658 -1.3911 52 1 3.5492 4.4664 -0.8899 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569451721.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:05 Heat of formation + Delta-G solvation = 2.302559 kcal Electronic energy + Delta-G solvation = -29390.799943 eV Core-core repulsion = 25710.690402 eV Total energy + Delta-G solvation = -3680.109541 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.39823 -39.28268 -37.95868 -36.15360 -35.62096 -33.85903 -32.33749 -31.52582 -29.83188 -28.91411 -27.90294 -26.31102 -24.20534 -23.86324 -22.98972 -22.80414 -21.51977 -21.06907 -20.10584 -18.68384 -18.01190 -17.80051 -17.10993 -16.93985 -16.31107 -16.14924 -15.65201 -15.49744 -15.31866 -15.19537 -15.03954 -14.69032 -14.45481 -14.34005 -14.19423 -13.75398 -13.63814 -13.40080 -13.27247 -13.20535 -12.94490 -12.79009 -12.67992 -12.47180 -12.31671 -12.26090 -12.19611 -12.07251 -12.01996 -11.97672 -11.81294 -11.53545 -11.31807 -11.13447 -10.81212 -10.78451 -10.49367 -10.13913 -9.69416 -8.71558 -8.67916 -7.75379 -5.07230 0.35193 1.32124 1.45043 1.50369 1.54540 1.76764 2.02651 2.56323 3.25268 3.32626 3.35498 3.53844 3.60624 3.73367 4.04589 4.11654 4.18505 4.26493 4.30988 4.33594 4.37334 4.38987 4.41494 4.45059 4.47836 4.55032 4.63697 4.75047 4.78639 4.81016 4.84400 4.84674 4.92884 4.94540 5.05495 5.07667 5.13750 5.15176 5.17565 5.38574 5.40581 5.43255 5.49184 5.55454 5.62752 5.71571 5.81717 6.01832 6.31612 6.41463 7.03700 7.27265 8.01892 8.41704 9.26257 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013270 B = 0.003434 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.459538 B = 8151.369452 C = 9397.068000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.078 4.078 4 H 0.128 0.872 5 S -0.230 6.230 6 C -0.133 4.133 7 C 0.514 3.486 8 O -0.574 6.574 9 N -0.601 5.601 10 C 0.122 3.878 11 C -0.123 4.123 12 C 0.179 3.821 13 N -0.598 5.598 14 C -0.243 4.243 15 H 0.061 0.939 16 C -0.040 4.040 17 N -0.903 5.903 18 Si 0.934 3.066 19 H -0.291 1.291 20 H -0.305 1.305 21 H -0.280 1.280 22 C 0.213 3.787 23 C -0.104 4.104 24 C -0.190 4.190 25 C -0.184 4.184 26 C -0.134 4.134 27 C 0.107 3.893 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.119 0.881 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.032 0.968 39 H 0.053 0.947 40 H 0.072 0.928 41 H 0.242 0.758 42 H 0.040 0.960 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.098 0.902 46 H 0.084 0.916 47 H 0.073 0.927 48 H 0.084 0.916 49 H 0.081 0.919 50 H 0.042 0.958 51 H 0.099 0.901 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.102 4.639 14.205 19.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.131 4.131 3 C -0.209 4.209 4 H 0.146 0.854 5 S -0.004 6.004 6 C -0.301 4.301 7 C 0.300 3.700 8 O -0.453 6.453 9 N -0.334 5.334 10 C -0.001 4.001 11 C -0.163 4.163 12 C 0.072 3.928 13 N -0.318 5.318 14 C -0.373 4.373 15 H 0.079 0.921 16 C -0.237 4.237 17 N -0.548 5.548 18 Si 0.766 3.234 19 H -0.219 1.219 20 H -0.233 1.233 21 H -0.206 1.206 22 C 0.088 3.912 23 C -0.124 4.124 24 C -0.227 4.227 25 C -0.222 4.222 26 C -0.174 4.174 27 C -0.015 4.015 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.138 0.862 34 H 0.095 0.905 35 H 0.120 0.880 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.051 0.949 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.051 0.949 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.087 0.913 45 H 0.116 0.884 46 H 0.102 0.898 47 H 0.092 0.908 48 H 0.103 0.897 49 H 0.100 0.900 50 H 0.061 0.939 51 H 0.117 0.883 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.191 3.768 15.190 19.839 hybrid contribution 1.174 -0.428 -2.594 2.879 sum -11.017 3.340 12.596 17.064 Atomic orbital electron populations 1.21792 0.92422 1.02893 1.03165 1.21193 0.98033 0.91065 1.02846 1.23521 0.93304 1.03282 1.00749 0.85415 1.87004 1.78650 1.10277 1.24435 1.23812 1.04643 0.93544 1.08099 1.20861 0.90517 0.81195 0.77417 1.90659 1.67934 1.36508 1.50241 1.48228 1.07265 1.24713 1.53185 1.21554 0.79235 1.02660 0.96611 1.22169 0.99992 0.99826 0.94341 1.20398 0.92297 0.95555 0.84534 1.44341 1.67573 1.14224 1.05643 1.19116 1.17747 1.04051 0.96412 0.92120 1.25201 0.96092 1.01483 1.00915 1.70357 1.11921 1.48506 1.24063 0.85752 0.77478 0.78173 0.82047 1.21872 1.23293 1.20585 1.20082 0.88268 0.85484 0.97384 1.22622 0.96859 0.93040 0.99907 1.23114 1.03857 1.04154 0.91580 1.22647 1.00175 1.02237 0.97107 1.22257 0.97663 1.02050 0.95388 1.22219 0.95887 0.90892 0.92539 0.91379 0.91333 0.91444 0.91310 0.91785 0.86241 0.90528 0.87964 0.91295 0.89325 0.94947 0.92825 0.90990 0.94865 0.94139 0.94767 0.91294 0.88374 0.89765 0.90821 0.89745 0.90035 0.93902 0.88271 0.88244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.74 71.98 0.70 -1.62 16 2 C -0.09 -2.01 4.93 30.60 0.15 -1.86 16 3 C -0.08 -1.67 2.10 29.85 0.06 -1.61 16 4 H 0.13 2.23 5.72 -2.39 -0.01 2.21 16 5 S -0.23 -4.41 20.59 -56.49 -1.16 -5.58 16 6 C -0.13 -1.71 8.89 113.37 1.01 -0.70 16 7 C 0.51 14.63 6.39 87.66 0.56 15.19 16 8 O -0.57 -21.15 15.71 -3.03 -0.05 -21.20 16 9 N -0.60 -15.51 2.59 -818.92 -2.12 -17.63 16 10 C 0.12 3.53 6.44 86.36 0.56 4.08 16 11 C -0.12 -4.35 5.31 30.67 0.16 -4.19 16 12 C 0.18 6.07 2.59 45.01 0.12 6.19 16 13 N -0.60 -25.99 2.47 -677.87 -1.67 -27.66 16 14 C -0.24 -12.21 8.39 84.03 0.71 -11.50 16 15 H 0.06 3.12 6.93 -2.91 -0.02 3.10 16 16 C -0.04 -2.13 4.77 84.86 0.41 -1.72 16 17 N -0.90 -49.18 9.25 21.65 0.20 -48.98 16 18 Si 0.93 43.93 29.62 68.60 2.03 45.96 16 19 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 20 H -0.31 -14.81 7.11 99.48 0.71 -14.10 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 22 C 0.21 9.13 5.09 86.38 0.44 9.57 16 23 C -0.10 -4.30 4.48 -10.79 -0.05 -4.35 16 24 C -0.19 -6.17 10.18 30.59 0.31 -5.86 16 25 C -0.18 -6.68 10.25 30.59 0.31 -6.37 16 26 C -0.13 -3.77 5.31 30.67 0.16 -3.61 16 27 C 0.11 2.13 4.25 86.36 0.37 2.50 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 1.09 7.13 -2.39 -0.02 1.07 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.06 1.61 8.02 -2.39 -0.02 1.59 16 33 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 1.13 6.46 -2.39 -0.02 1.11 16 35 H 0.10 0.93 7.44 -2.39 -0.02 0.91 16 36 H 0.07 2.25 7.00 -2.39 -0.02 2.23 16 37 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.03 1.36 7.66 -2.39 -0.02 1.34 16 39 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 40 H 0.07 2.19 7.87 -2.38 -0.02 2.17 16 41 H 0.24 13.23 8.31 -92.71 -0.77 12.46 16 42 H 0.04 2.01 6.41 -2.39 -0.02 2.00 16 43 H 0.03 1.28 7.78 -2.39 -0.02 1.26 16 44 H 0.07 3.50 7.43 -2.39 -0.02 3.48 16 45 H 0.10 2.78 8.03 -2.39 -0.02 2.76 16 46 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 47 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 48 H 0.08 2.92 8.14 -2.38 -0.02 2.90 16 49 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 50 H 0.04 1.45 7.09 -2.39 -0.02 1.43 16 51 H 0.10 1.55 4.81 -2.39 -0.01 1.54 16 52 H 0.10 1.48 7.17 -2.39 -0.02 1.47 16 Total: -1.00 -63.11 403.33 4.08 -59.03 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.88 Total: 21.91 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: 5.98 Total: -5.85 kcal Atomic # 7 Polarization: -90.68 SS G_CDS: -3.60 Total: -94.27 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.05 Total: -21.20 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: -4.41 SS G_CDS: -1.16 Total: -5.58 kcal Total: -63.11 4.08 -59.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569451721.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.331 kcal (2) G-P(sol) polarization free energy of solvation -63.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds