Wall clock time and date at job start Sat Apr 11 2020 06:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46901 * 111.00109 * 2 1 4 4 C 1.50699 * 109.46685 * 66.04601 * 3 2 1 5 5 H 1.07999 * 120.00217 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99535 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00378 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99841 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.46926 * 90.00026 * 8 6 4 10 10 H 1.48493 * 109.47078 * 210.00172 * 8 6 4 11 11 H 1.48501 * 109.46977 * 330.00473 * 8 6 4 12 12 C 1.46901 * 110.99491 * 236.05102 * 2 1 3 13 13 C 1.53009 * 109.46520 * 199.85118 * 12 2 1 14 14 H 1.09001 * 109.47028 * 300.45851 * 13 12 2 15 15 O 1.42899 * 109.47468 * 60.46346 * 13 12 2 16 16 C 1.53003 * 109.46910 * 180.46243 * 13 12 2 17 17 N 1.46896 * 109.47085 * 180.02562 * 16 13 12 18 18 C 1.46907 * 110.99950 * 179.97438 * 17 16 13 19 19 C 1.53000 * 109.46891 * 179.97438 * 18 17 16 20 20 C 1.52996 * 109.47210 * 304.99856 * 19 18 17 21 21 O 1.42893 * 109.47194 * 65.00396 * 19 18 17 22 22 C 1.50706 * 109.46887 * 184.99968 * 19 18 17 23 23 C 1.38248 * 119.97328 * 29.72989 * 22 19 18 24 24 C 1.38195 * 120.02634 * 179.72578 * 23 22 19 25 25 C 1.38462 * 119.96847 * 0.52292 * 24 23 22 26 26 F 1.35103 * 120.02314 * 179.72896 * 25 24 23 27 27 C 1.38452 * 119.95208 * 359.74812 * 25 24 23 28 28 C 1.38192 * 119.97530 * 0.02562 * 27 25 24 29 29 H 1.09001 * 109.47243 * 188.77478 * 1 2 3 30 30 H 1.08997 * 109.46589 * 308.77235 * 1 2 3 31 31 H 1.08999 * 109.47212 * 68.77038 * 1 2 3 32 32 H 1.08996 * 109.47291 * 186.04633 * 3 2 1 33 33 H 1.08996 * 109.46841 * 306.05047 * 3 2 1 34 34 H 0.97000 * 119.99975 * 179.97438 * 7 6 4 35 35 H 1.08994 * 109.47356 * 79.85428 * 12 2 1 36 36 H 1.09001 * 109.47282 * 319.84270 * 12 2 1 37 37 H 0.96705 * 113.99698 * 59.99145 * 15 13 12 38 38 H 1.09000 * 109.47233 * 59.99854 * 16 13 12 39 39 H 1.09001 * 109.47216 * 300.00136 * 16 13 12 40 40 H 1.00893 * 111.00329 * 56.04873 * 17 16 13 41 41 H 1.09006 * 109.46679 * 59.99988 * 18 17 16 42 42 H 1.08994 * 109.46875 * 300.00048 * 18 17 16 43 43 H 1.08998 * 109.47415 * 300.00173 * 20 19 18 44 44 H 1.09004 * 109.46938 * 60.00114 * 20 19 18 45 45 H 1.09000 * 109.47238 * 180.02562 * 20 19 18 46 46 H 0.96700 * 114.00523 * 59.99491 * 21 19 18 47 47 H 1.08000 * 119.98625 * 359.97438 * 23 22 19 48 48 H 1.07996 * 120.01588 * 180.29081 * 24 23 22 49 49 H 1.08001 * 120.01686 * 179.97438 * 27 25 24 50 50 H 1.08003 * 119.99061 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 1 1.0747 1.5111 2.0488 6 6 2.0278 3.3490 1.5289 7 7 2.7129 4.0015 0.6154 8 14 1.5840 4.1864 3.1388 9 1 2.6609 3.9492 4.1333 10 1 1.4322 5.6460 2.9121 11 1 0.3061 3.6293 3.6506 12 6 1.9954 -0.7659 -1.1377 13 6 3.4449 -1.1666 -0.8557 14 1 4.0464 -0.2706 -0.7028 15 8 3.4946 -1.9798 0.3183 16 6 3.9969 -1.9545 -2.0455 17 7 5.3883 -2.3397 -1.7746 18 6 5.9522 -3.1002 -2.8979 19 6 7.3992 -3.4822 -2.5797 20 6 8.1955 -2.2220 -2.2352 21 8 7.4215 -4.3788 -1.4672 22 6 8.0166 -4.1544 -3.7790 23 6 7.5905 -3.8233 -5.0518 24 6 8.1599 -4.4349 -6.1525 25 6 9.1498 -5.3875 -5.9796 26 9 9.7033 -5.9900 -7.0548 27 6 9.5717 -5.7223 -4.7042 28 6 9.0042 -5.1060 -3.6052 29 1 -0.3634 -1.0156 0.1568 30 1 -0.3632 0.6436 0.8012 31 1 -0.3633 0.3721 -0.9579 32 1 3.0798 1.3444 -0.1082 33 1 1.5611 1.9273 -0.8308 34 1 2.9875 4.9176 0.7775 35 1 1.9566 -0.1525 -2.0378 36 1 1.3923 -1.6623 -1.2824 37 1 2.9802 -2.7961 0.2533 38 1 3.9590 -1.3342 -2.9410 39 1 3.3953 -2.8505 -2.1985 40 1 5.4580 -2.8616 -0.9139 41 1 5.9283 -2.4880 -3.7995 42 1 5.3639 -4.0039 -3.0565 43 1 8.1784 -1.5382 -3.0838 44 1 7.7489 -1.7359 -1.3678 45 1 9.2264 -2.4941 -2.0090 46 1 6.9351 -5.2013 -1.6151 47 1 6.8153 -3.0835 -5.1861 48 1 7.8302 -4.1727 -7.1470 49 1 10.3434 -6.4655 -4.5681 50 1 9.3334 -5.3667 -2.6101 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647556407.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:23 Heat of formation + Delta-G solvation = -139.949561 kcal Electronic energy + Delta-G solvation = -29329.253412 eV Core-core repulsion = 25076.762180 eV Total energy + Delta-G solvation = -4252.491232 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.93254 -40.98294 -39.53029 -38.34400 -37.21661 -35.56313 -34.58868 -33.26274 -32.07757 -31.16771 -29.89629 -29.28371 -27.72563 -26.13902 -24.94434 -24.14957 -23.39227 -22.69100 -21.72351 -21.19492 -18.86189 -18.59932 -18.23859 -17.70267 -17.23989 -17.21586 -16.64379 -16.59027 -16.40050 -16.06208 -15.94417 -15.74530 -15.37459 -15.16521 -14.79413 -14.68519 -14.45309 -14.21724 -14.13186 -13.94922 -13.65952 -13.30042 -13.22396 -13.17924 -13.09157 -12.89658 -12.79838 -12.56098 -12.54703 -12.50690 -12.28628 -12.13533 -12.09442 -11.72676 -11.49496 -11.32165 -11.10817 -10.65202 -10.59311 -10.10270 -9.62389 -9.28000 -8.92557 -8.18970 -6.28229 0.06479 0.24060 1.40685 1.43317 1.53550 2.41347 2.53771 2.87550 3.13360 3.23956 3.30589 3.41741 3.72164 3.74935 3.76000 3.91859 3.97106 4.00999 4.14968 4.20194 4.29152 4.37952 4.42513 4.46375 4.58639 4.62393 4.67841 4.76038 4.79639 4.83152 4.87872 4.95695 4.98386 5.08634 5.10151 5.14247 5.16367 5.23915 5.28589 5.32638 5.40775 5.49123 5.66281 5.87243 6.05671 6.10186 6.36918 6.49085 6.67452 6.82260 6.87772 7.09115 7.40872 8.92060 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020688 B = 0.001831 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.084781 B =15287.178072 C =15591.624865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.542 5.542 3 C 0.210 3.790 4 C -0.522 4.522 5 H 0.061 0.939 6 C -0.001 4.001 7 N -0.934 5.934 8 Si 0.969 3.031 9 H -0.275 1.275 10 H -0.281 1.281 11 H -0.263 1.263 12 C 0.026 3.974 13 C 0.126 3.874 14 H 0.061 0.939 15 O -0.558 6.558 16 C 0.045 3.955 17 N -0.689 5.689 18 C 0.038 3.962 19 C 0.186 3.814 20 C -0.127 4.127 21 O -0.560 6.560 22 C -0.125 4.125 23 C -0.085 4.085 24 C -0.156 4.156 25 C 0.078 3.922 26 F -0.150 7.150 27 C -0.156 4.156 28 C -0.075 4.075 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.012 0.988 32 H 0.003 0.997 33 H -0.042 1.042 34 H 0.264 0.736 35 H 0.028 0.972 36 H 0.096 0.904 37 H 0.378 0.622 38 H 0.078 0.922 39 H 0.054 0.946 40 H 0.351 0.649 41 H 0.088 0.912 42 H 0.047 0.953 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.055 0.945 46 H 0.388 0.612 47 H 0.149 0.851 48 H 0.149 0.851 49 H 0.149 0.851 50 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.610 -22.756 -13.608 28.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.266 5.266 3 C 0.084 3.916 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.199 4.199 7 N -0.575 5.575 8 Si 0.793 3.207 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.188 1.188 12 C -0.103 4.103 13 C 0.065 3.935 14 H 0.079 0.921 15 O -0.363 6.363 16 C -0.085 4.085 17 N -0.323 5.323 18 C -0.091 4.091 19 C 0.145 3.855 20 C -0.185 4.185 21 O -0.367 6.367 22 C -0.126 4.126 23 C -0.103 4.103 24 C -0.175 4.175 25 C 0.059 3.941 26 F -0.129 7.129 27 C -0.175 4.175 28 C -0.093 4.093 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.030 0.970 32 H 0.021 0.979 33 H -0.024 1.024 34 H 0.072 0.928 35 H 0.046 0.954 36 H 0.114 0.886 37 H 0.225 0.775 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.171 0.829 41 H 0.106 0.894 42 H 0.065 0.935 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.074 0.926 46 H 0.237 0.763 47 H 0.167 0.833 48 H 0.167 0.833 49 H 0.167 0.833 50 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 10.848 -21.288 -12.994 27.198 hybrid contribution -1.257 -0.422 -0.832 1.566 sum 9.591 -21.710 -13.826 27.468 Atomic orbital electron populations 1.22246 0.87557 1.01703 0.99423 1.61941 1.07814 1.15063 1.41768 1.19360 0.93688 0.83958 0.94606 1.21485 1.34678 0.97416 1.02491 0.92099 1.25931 0.95127 0.98157 1.00703 1.70085 1.39426 1.11858 1.36109 0.85389 0.78935 0.77265 0.79064 1.20085 1.20659 1.18755 1.22797 0.97117 0.98583 0.91791 1.21688 0.93852 0.93023 0.84887 0.92065 1.86667 1.73874 1.36883 1.38894 1.22453 0.89029 0.99177 0.97881 1.60212 1.18205 1.47920 1.05923 1.22713 0.94287 0.97165 0.94966 1.19854 0.93293 0.89301 0.83089 1.21614 0.99050 0.94993 1.02816 1.86604 1.77657 1.33003 1.39451 1.20606 0.98444 0.98276 0.95239 1.21196 0.99282 0.99044 0.90798 1.21359 0.97249 0.97414 1.01437 1.18043 0.96420 0.96047 0.83592 1.91482 1.84497 1.82276 1.54635 1.21354 1.02636 1.02825 0.90651 1.20998 0.94436 0.94489 0.99349 0.90021 0.92803 0.96972 0.97896 1.02399 0.92761 0.95424 0.88586 0.77455 0.90317 0.92760 0.82863 0.89422 0.93468 0.90958 0.91861 0.92575 0.76300 0.83308 0.83301 0.83332 0.83520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.46 9.37 127.69 1.20 2.66 16 2 N -0.54 -23.25 4.56 -927.03 -4.22 -27.47 16 3 C 0.21 11.45 4.55 85.56 0.39 11.83 16 4 C -0.52 -30.49 8.39 25.60 0.21 -30.28 16 5 H 0.06 3.50 7.17 -2.91 -0.02 3.48 16 6 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 7 N -0.93 -57.47 13.29 21.45 0.28 -57.18 16 8 Si 0.97 45.45 29.54 68.60 2.03 47.47 16 9 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 12 C 0.03 0.86 4.66 86.31 0.40 1.26 16 13 C 0.13 3.94 3.30 30.60 0.10 4.04 16 14 H 0.06 2.54 6.78 -2.39 -0.02 2.52 16 15 O -0.56 -17.49 12.55 -148.98 -1.87 -19.35 16 16 C 0.04 0.97 5.39 86.31 0.47 1.44 16 17 N -0.69 -14.72 5.52 -513.87 -2.84 -17.56 16 18 C 0.04 0.58 4.32 86.30 0.37 0.95 16 19 C 0.19 2.88 1.00 -11.54 -0.01 2.87 16 20 C -0.13 -2.49 8.61 71.98 0.62 -1.87 16 21 O -0.56 -8.72 11.48 -148.98 -1.71 -10.43 16 22 C -0.12 -1.72 4.81 -19.86 -0.10 -1.81 16 23 C -0.09 -1.09 9.13 22.26 0.20 -0.89 16 24 C -0.16 -2.11 10.03 22.31 0.22 -1.89 16 25 C 0.08 1.22 7.30 22.37 0.16 1.39 16 26 F -0.15 -2.69 17.27 44.97 0.78 -1.92 16 27 C -0.16 -2.11 10.03 22.31 0.22 -1.89 16 28 C -0.07 -0.99 9.34 22.26 0.21 -0.78 16 29 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.05 2.26 6.66 -2.39 -0.02 2.24 16 31 H 0.01 0.43 8.13 -2.39 -0.02 0.41 16 32 H 0.00 0.18 6.63 -2.39 -0.02 0.16 16 33 H -0.04 -2.45 8.12 -2.39 -0.02 -2.47 16 34 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 35 H 0.03 0.94 8.00 -2.39 -0.02 0.92 16 36 H 0.10 2.42 7.94 -2.39 -0.02 2.40 16 37 H 0.38 8.20 9.05 -74.05 -0.67 7.53 16 38 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.35 7.98 7.68 -89.70 -0.69 7.29 16 41 H 0.09 1.25 6.21 -2.38 -0.01 1.24 16 42 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 44 H 0.06 1.54 7.47 -2.39 -0.02 1.52 16 45 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.39 3.39 9.04 -74.06 -0.67 2.72 16 47 H 0.15 1.48 6.04 -2.91 -0.02 1.46 16 48 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 49 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 50 H 0.15 1.70 7.48 -2.91 -0.02 1.67 16 Total: -1.00 -72.15 406.90 -3.48 -75.63 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: -1.06 Total: 23.40 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: 5.14 Total: -12.58 kcal Atomic # 7 Polarization: -95.44 SS G_CDS: -6.78 Total: -102.22 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -3.58 Total: -29.78 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.78 Total: -1.92 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -72.15 -3.48 -75.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647556407.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.319 kcal (2) G-P(sol) polarization free energy of solvation -72.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds