Wall clock time and date at job start Sat Apr 11 2020 06:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46891 * 111.00071 * 2 1 4 4 C 1.50706 * 109.47049 * 66.05170 * 3 2 1 5 5 H 1.07995 * 119.99965 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99874 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00404 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99825 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47100 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47054 * 119.99878 * 8 6 4 11 11 H 1.48500 * 109.47134 * 240.00287 * 8 6 4 12 12 C 1.46905 * 110.99713 * 236.04897 * 2 1 3 13 13 C 1.53000 * 109.47123 * 293.95674 * 12 2 1 14 14 H 1.09002 * 109.47398 * 59.99875 * 13 12 2 15 15 O 1.42903 * 109.46726 * 299.99631 * 13 12 2 16 16 C 1.53002 * 109.47233 * 180.02562 * 13 12 2 17 17 N 1.46896 * 109.47181 * 184.99855 * 16 13 12 18 18 C 1.46904 * 111.00016 * 179.97438 * 17 16 13 19 19 C 1.53001 * 109.47256 * 179.97438 * 18 17 16 20 20 C 1.53000 * 109.47097 * 305.00145 * 19 18 17 21 21 O 1.42898 * 109.46579 * 65.00317 * 19 18 17 22 22 C 1.50700 * 109.47185 * 185.00010 * 19 18 17 23 23 C 1.38275 * 119.98388 * 29.72699 * 22 19 18 24 24 C 1.38225 * 120.04755 * 179.72326 * 23 22 19 25 25 C 1.38228 * 120.02319 * 0.55170 * 24 23 22 26 26 C 1.38431 * 119.97328 * 359.72271 * 25 24 23 27 27 F 1.35102 * 120.02478 * 180.02562 * 26 25 24 28 28 C 1.38163 * 119.98845 * 210.00178 * 22 19 18 29 29 H 1.09002 * 109.47298 * 183.95531 * 1 2 3 30 30 H 1.09011 * 109.46893 * 303.94641 * 1 2 3 31 31 H 1.08994 * 109.47518 * 63.94659 * 1 2 3 32 32 H 1.09008 * 109.47131 * 186.04936 * 3 2 1 33 33 H 1.08997 * 109.47884 * 306.05210 * 3 2 1 34 34 H 0.96997 * 120.00581 * 179.97438 * 7 6 4 35 35 H 1.08992 * 109.47078 * 173.95361 * 12 2 1 36 36 H 1.09004 * 109.46829 * 53.95008 * 12 2 1 37 37 H 0.96700 * 114.00234 * 300.00043 * 15 13 12 38 38 H 1.09008 * 109.46873 * 304.99791 * 16 13 12 39 39 H 1.08997 * 109.47047 * 64.99480 * 16 13 12 40 40 H 1.00896 * 111.00229 * 56.04575 * 17 16 13 41 41 H 1.08998 * 109.47006 * 300.00352 * 18 17 16 42 42 H 1.09003 * 109.46947 * 60.00060 * 18 17 16 43 43 H 1.09002 * 109.46829 * 59.99856 * 20 19 18 44 44 H 1.08999 * 109.46605 * 179.97438 * 20 19 18 45 45 H 1.09002 * 109.47251 * 299.99691 * 20 19 18 46 46 H 0.96691 * 114.00469 * 60.00133 * 21 19 18 47 47 H 1.07998 * 119.97604 * 359.97438 * 23 22 19 48 48 H 1.07993 * 119.98919 * 180.27529 * 24 23 22 49 49 H 1.07992 * 120.00822 * 179.70358 * 25 24 23 50 50 H 1.08000 * 120.01697 * 0.02622 * 28 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.6370 2.0470 1.2986 5 1 1.0741 1.5114 2.0486 6 6 2.0278 3.3490 1.5290 7 7 2.7137 4.0012 0.6159 8 14 1.5829 4.1867 3.1383 9 1 0.8138 3.2448 3.9906 10 1 2.8244 4.5931 3.8445 11 1 0.7563 5.3883 2.8589 12 6 1.9954 -0.7660 -1.1377 13 6 1.6313 -2.2426 -0.9705 14 1 0.5470 -2.3475 -0.9325 15 8 2.2008 -2.7392 0.2424 16 6 2.1801 -3.0405 -2.1551 17 7 1.7296 -4.4352 -2.0568 18 6 2.2381 -5.2331 -3.1806 19 6 1.7496 -6.6765 -3.0435 20 6 2.1551 -7.2242 -1.6736 21 8 0.3265 -6.7116 -3.1684 22 6 2.3699 -7.5217 -4.1261 23 6 3.6164 -7.1960 -4.6282 24 6 4.1890 -7.9736 -5.6171 25 6 3.5110 -9.0713 -6.1133 26 6 2.2606 -9.3949 -5.6153 27 9 1.5972 -10.4678 -6.0992 28 6 1.6903 -8.6184 -4.6205 29 1 -0.3634 -1.0252 0.0709 30 1 -0.3633 0.5739 0.8526 31 1 -0.3634 0.4513 -0.9232 32 1 3.0798 1.3443 -0.1083 33 1 1.5611 1.9274 -0.8308 34 1 2.9883 4.9172 0.7779 35 1 3.0796 -0.6611 -1.1758 36 1 1.5609 -0.3872 -2.0628 37 1 3.1652 -2.6772 0.2784 38 1 1.8158 -2.6057 -3.0860 39 1 3.2695 -3.0086 -2.1411 40 1 0.7234 -4.4873 -2.0029 41 1 1.8739 -4.8134 -4.1183 42 1 3.3280 -5.2165 -3.1741 43 1 1.7065 -6.6128 -0.8906 44 1 1.8067 -8.2524 -1.5759 45 1 3.2406 -7.1974 -1.5784 46 1 -0.0024 -6.3782 -4.0143 47 1 4.1447 -6.3358 -4.2445 48 1 5.1645 -7.7210 -6.0054 49 1 3.9565 -9.6758 -6.8893 50 1 0.7146 -8.8698 -4.2317 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647562558.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:33 Heat of formation + Delta-G solvation = -112.860878 kcal Electronic energy + Delta-G solvation = -29135.147779 eV Core-core repulsion = 24883.831201 eV Total energy + Delta-G solvation = -4251.316579 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.30528 -40.42382 -38.38139 -37.64332 -35.75716 -34.70782 -32.74990 -32.49832 -31.21606 -30.13364 -29.26667 -27.25365 -26.64244 -25.22054 -23.80696 -23.25215 -22.68253 -21.40160 -20.64015 -20.13483 -18.36822 -17.29500 -16.69614 -16.61371 -16.43917 -16.15766 -16.01528 -15.82751 -15.40174 -15.03936 -14.88326 -14.48168 -14.37974 -14.22292 -14.16619 -13.61945 -13.43234 -13.12356 -13.06501 -12.69758 -12.57439 -12.51905 -12.15784 -12.09407 -12.04454 -11.91094 -11.73373 -11.33660 -11.14190 -11.11531 -10.88244 -10.74174 -10.65236 -10.50759 -10.28486 -9.96498 -9.56713 -9.46167 -9.17107 -9.08256 -8.56918 -8.43869 -7.19431 -6.02749 -4.03535 0.62953 0.71183 3.06226 3.31716 3.39042 3.44790 3.48961 3.84504 3.89419 4.21852 4.30649 4.43381 4.52135 4.56487 4.61634 4.68306 4.80153 4.85440 4.91854 5.14793 5.22060 5.26992 5.30419 5.33354 5.40695 5.52352 5.55224 5.59559 5.61677 5.64594 5.67617 5.73238 5.82218 5.93487 6.05300 6.13705 6.19808 6.29841 6.39468 6.40243 6.74844 6.77388 7.15247 7.23084 7.26980 7.32478 7.81166 8.05130 8.15392 8.21585 8.55821 9.05044 9.60821 11.08274 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.033414 B = 0.001623 C = 0.001594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.767133 B =17243.384116 C =17562.414229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.528 5.528 3 C 0.192 3.808 4 C -0.504 4.504 5 H 0.065 0.935 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.024 3.976 13 C 0.118 3.882 14 H 0.091 0.909 15 O -0.535 6.535 16 C 0.027 3.973 17 N -0.670 5.670 18 C 0.035 3.965 19 C 0.176 3.824 20 C -0.125 4.125 21 O -0.549 6.549 22 C -0.085 4.085 23 C -0.123 4.123 24 C -0.090 4.090 25 C -0.155 4.155 26 C 0.097 3.903 27 F -0.140 7.140 28 C -0.138 4.138 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.007 0.993 32 H 0.028 0.972 33 H -0.011 1.011 34 H 0.260 0.740 35 H 0.069 0.931 36 H 0.026 0.974 37 H 0.368 0.632 38 H 0.034 0.966 39 H 0.075 0.925 40 H 0.347 0.653 41 H 0.032 0.968 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.055 0.945 45 H 0.069 0.931 46 H 0.375 0.625 47 H 0.134 0.866 48 H 0.134 0.866 49 H 0.135 0.865 50 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.399 -26.172 -15.266 30.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.252 5.252 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.083 0.917 6 C -0.148 4.148 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.212 1.212 12 C -0.106 4.106 13 C 0.058 3.942 14 H 0.109 0.891 15 O -0.338 6.338 16 C -0.103 4.103 17 N -0.302 5.302 18 C -0.095 4.095 19 C 0.135 3.865 20 C -0.182 4.182 21 O -0.354 6.354 22 C -0.086 4.086 23 C -0.141 4.141 24 C -0.108 4.108 25 C -0.174 4.174 26 C 0.078 3.922 27 F -0.119 7.119 28 C -0.156 4.156 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.025 0.975 32 H 0.046 0.954 33 H 0.006 0.994 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.044 0.956 37 H 0.214 0.786 38 H 0.052 0.948 39 H 0.093 0.907 40 H 0.166 0.834 41 H 0.050 0.950 42 H 0.102 0.898 43 H 0.106 0.894 44 H 0.074 0.926 45 H 0.088 0.912 46 H 0.222 0.778 47 H 0.152 0.848 48 H 0.152 0.848 49 H 0.152 0.848 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.534 -26.804 -13.702 30.143 hybrid contribution -0.449 1.509 -1.813 2.401 sum 1.085 -25.296 -15.515 29.695 Atomic orbital electron populations 1.22248 0.89012 0.99602 1.00319 1.62012 1.06815 1.17343 1.39034 1.19753 0.95268 0.81667 0.96630 1.21219 1.34535 0.96845 1.01681 0.91694 1.25000 0.95335 0.97376 0.97042 1.69966 1.38593 1.11402 1.34104 0.86432 0.78156 0.79260 0.83533 1.19589 1.21015 1.21174 1.22728 1.00508 0.93994 0.93356 1.21837 0.98149 0.90683 0.83557 0.89086 1.86595 1.24843 1.84900 1.37458 1.22755 1.01115 0.88230 0.98241 1.60316 1.17197 1.09985 1.42701 1.22687 1.01295 0.92941 0.92585 1.20089 0.80372 0.92030 0.94038 1.21631 1.01501 1.00983 0.94128 1.86620 1.19947 1.87379 1.41487 1.20425 0.95196 0.95933 0.97085 1.21251 0.95237 1.00417 0.97243 1.21047 0.99842 0.93801 0.96082 1.21211 0.94169 0.99667 1.02331 1.17718 0.91898 0.86227 0.96388 1.91513 1.80351 1.53081 1.86914 1.20991 1.01940 0.95526 0.97180 0.93443 0.90679 0.97468 0.95373 0.99369 0.93032 0.91204 0.95637 0.78578 0.94760 0.90654 0.83356 0.95007 0.89771 0.89424 0.92588 0.91201 0.77791 0.84843 0.84767 0.84752 0.84036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 9.14 60.06 0.55 1.28 16 2 N -0.53 -11.35 4.62 -244.37 -1.13 -12.48 16 3 C 0.19 5.01 4.72 -4.98 -0.02 4.98 16 4 C -0.50 -14.29 8.46 -34.44 -0.29 -14.58 16 5 H 0.06 1.84 7.12 -52.49 -0.37 1.47 16 6 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 7 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 8 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 9 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 C 0.02 0.41 4.62 -3.82 -0.02 0.39 16 13 C 0.12 1.63 3.02 -26.73 -0.08 1.55 16 14 H 0.09 1.31 6.55 -51.93 -0.34 0.97 16 15 O -0.53 -8.24 13.15 -35.23 -0.46 -8.70 16 16 C 0.03 0.28 5.32 -3.83 -0.02 0.26 16 17 N -0.67 -6.40 5.47 -113.78 -0.62 -7.02 16 18 C 0.03 0.26 4.32 -3.82 -0.02 0.25 16 19 C 0.18 1.32 1.00 -91.77 -0.09 1.23 16 20 C -0.13 -1.07 8.61 37.16 0.32 -0.75 16 21 O -0.55 -4.31 11.48 -35.23 -0.40 -4.71 16 22 C -0.09 -0.62 4.81 -104.64 -0.50 -1.12 16 23 C -0.12 -0.78 9.14 -39.57 -0.36 -1.14 16 24 C -0.09 -0.52 10.04 -39.59 -0.40 -0.92 16 25 C -0.15 -1.03 10.03 -39.51 -0.40 -1.43 16 26 C 0.10 0.79 7.30 -39.42 -0.29 0.50 16 27 F -0.14 -1.29 17.27 2.25 0.04 -1.25 16 28 C -0.14 -1.08 9.33 -39.52 -0.37 -1.45 16 29 H 0.05 0.82 6.47 -51.93 -0.34 0.48 16 30 H 0.07 1.61 6.76 -51.92 -0.35 1.26 16 31 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.03 0.78 7.93 -51.92 -0.41 0.37 16 33 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 35 H 0.07 1.16 7.93 -51.93 -0.41 0.75 16 36 H 0.03 0.43 8.12 -51.93 -0.42 0.00 16 37 H 0.37 4.74 9.04 45.56 0.41 5.15 16 38 H 0.03 0.35 8.14 -51.92 -0.42 -0.08 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.35 3.46 8.29 -39.29 -0.33 3.14 16 41 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.08 0.60 6.21 -51.93 -0.32 0.27 16 43 H 0.09 0.89 7.47 -51.93 -0.39 0.50 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.37 1.87 9.04 45.56 0.41 2.28 16 47 H 0.13 0.68 6.04 -52.49 -0.32 0.37 16 48 H 0.13 0.48 8.06 -52.49 -0.42 0.05 16 49 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 50 H 0.14 1.09 7.48 -52.49 -0.39 0.69 16 LS Contribution 407.33 15.07 6.14 6.14 Total: -1.00 -32.33 407.33 -9.32 -41.65 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -6.51 Total: 5.23 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -2.09 Total: -9.53 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: -1.02 Total: -45.57 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.87 Total: -13.42 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.33 -9.32 -41.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647562558.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.212 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds